BetterScholar BetterScholar
13
Role
Title
Level Year L/R
🐜 Landscape of transcription in human cells
85 auth. S. Djebali, Carrie A. Davis, A. Merkel, A. Dobin, T. Lassmann, A. Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, F. Schlesinger, Chenghai Xue, G. Marinov, Jainab Khatun, B. Williams, C. Zaleski, ... J. Rozowsky, M. RΓΆder, F. Kokocinski, Rehab F Abdelhamid, T. Alioto, I. Antoshechkin, Michael T. Baer, Nadav S. Bar, P. Batut, K. Bell, I. Bell, S. Chakrabortty, Xian Chen, Jacqueline Chrast, JoΓ£o Curado, T. Derrien, J. Drenkow, E. Dumais, Jacqueline Dumais, R. Duttagupta, E. Falconnet, Meagan Fastuca, Katalin Fejes-Toth, Pedro G. Ferreira, S. Foissac, M. Fullwood, Hui Gao, David Gonzalez, Assaf Gordon, H. Gunawardena, C. Howald, Sonali Jha, Rory Johnson, P. Kapranov, Brandon King, C. Kingswood, O. J. Luo, Eddie Park, K. Persaud, Jonathan Preall, Paolo Ribeca, B. Risk, D. Robyr, M. Sammeth, Lorian Schaffer, L. See, Atif Shahab, JΓΈrgen Skancke, A. Suzuki, Hazuki Takahashi, Hagen U. Tilgner, Diane Trout, Nathalie Walters, Huaien Wang, J. Wrobel, Yanbao Yu, Xiaoan Ruan, Y. Hayashizaki, J. Harrow, M. Gerstein, T. Hubbard, A. Reymond, S. Antonarakis, G. Hannon, Morgan C. Giddings, Y. Ruan, B. Wold, Piero Carninci, R. GuigΓ³, T. Gingeras
12 2012
12
🐜
🐜 A comparative encyclopedia of DNA elements in the mouse genome
133 auth. Feng Yue, A. Breschi, J. Vierstra, Weisheng Wu, T. Ryba, R. Sandstrom, Zhihai Ma, Carrie A. Davis, Benjamin D. Pope, Yin Shen, D. Pervouchine, S. Djebali, B. Thurman, R. Kaul, Eric Rynes, ... Anthony Kirilusha, G. Marinov, B. Williams, Diane Trout, Henry Amrhein, Katherine I. Fisher-Aylor, I. Antoshechkin, Gilberto Desalvo, L. See, Meagan Fastuca, J. Drenkow, C. Zaleski, A. Dobin, Pablo Prieto, Julien Lagarde, G. Bussotti, Andrea Tanzer, Olgert Denas, Kanwei Li, M. Bender, Miaohua Zhang, Rachel Byron, M. Groudine, David F. McCleary, L. Pham, Z. Ye, Samantha Kuan, Lee E. Edsall, Yi-Chieh Wu, Matthew D. Rasmussen, M. Bansal, C. Keller, Christapher S. Morrissey, Tejaswini Mishra, D. Jain, Nergiz Dogan, Robert S. Harris, Philip Cayting, T. Kawli, A. Boyle, G. Euskirchen, A. Kundaje, Shin Lin, Yiing Lin, Camden Jansen, V. Malladi, M. Cline, Drew T. Erickson, V. Kirkup, K. Learned, C. A. Sloan, K. Rosenbloom, Beatriz Lacerda de Sousa, Kathryn M Beal, M. Pignatelli, P. Flicek, Jin Lian, Tamer Kahveci, Dongwon Lee, W. Kent, Miguel Ramalho Santos, Javier Herrero, CΓ©dric Notredame, Audra K. Johnson, Shinny Vong, Kristen Lee, Daniel Bates, Fidencio V. Neri, Morgan Diegel, Theresa Canfield, P. Sabo, M. Wilken, T. Reh, Erika Giste, A. Shafer, T. Kutyavin, E. Haugen, D. Dunn, Alex P. Reynolds, Shane J. Neph, R. Humbert, R. Hansen, M. D. de Bruijn, L. Selleri, A. Rudensky, Steven Z. Josefowicz, R. Samstein, E. Eichler, S. Orkin, D. Levasseur, T. Papayannopoulou, Kai‐Hsin Chang, A. Skoultchi, S. Gosh, C. Disteche, P. Treuting, Yanli Wang, M. Weiss, G. Blobel, P. Good, R. Lowdon, Leslie B. Adams, Xiao-Qiao Zhou, M. Pazin, E. Feingold, B. Wold, James Taylor, Manolis Kellis, A. Mortazavi, S. Weissman, J. Stamatoyannopoulos, M. Snyder, R. GuigΓ³, T. Gingeras, D. Gilbert, R. Hardison, Michael A. Beer, B. Ren
10 2014
10
🐜
🐜 A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
314 auth. R. Myers, J. Stamatoyannopoulos, M. Snyder, I. Dunham, R. Hardison, B. Bernstein, T. Gingeras, W. Kent, E. Birney, B. Wold, G. Crawford, C. Epstein, N. Shoresh, J. Ernst, T. Mikkelsen, ... Pouya Kheradpour, Xiaolan Zhang, Li Wang, Robbyn Issner, Michael J. Coyne, Timothy J. Durham, Manching Ku, Thanh Truong, L. D. Ward, Robert C. Altshuler, Michael F. Lin, Manolis Kellis, Carrie A. Davis, P. Kapranov, A. Dobin, C. Zaleski, F. Schlesinger, P. Batut, S. Chakrabortty, Sonali Jha, Wei Lin, J. Drenkow, Huaien Wang, K. Bell, I. Bell, Hui Gao, E. Dumais, Jacqueline Dumais, S. Antonarakis, C. Ucla, C. Borel, R. GuigΓ³, S. Djebali, Julien Lagarde, C. Kingswood, Paolo Ribeca, M. Sammeth, T. Alioto, A. Merkel, Hagen U. Tilgner, Piero Carninci, Y. Hayashizaki, T. Lassmann, Hazuki Takahashi, Rehab F Abdelhamid, G. Hannon, Katalin Fejes, Jonathan Preall, Assaf Gordon, V. Sotirova, A. Reymond, C. Howald, Emilie AΓ―t Yahya Graison, Jacqueline Chrast, Y. Ruan, Xiaoan Ruan, Atif Shahab, W. Poh, Chia-Lin Wei, T. Furey, A. Boyle, Nathan C. Sheffield, Lingyun Song, Yoichiro Shibata, T. Vales, D. Winter, Zhancheng Zhang, D. London, Tian-yuan Wang, Damian Keefe, V. Iyer, Bum-Kyu Lee, Ryan McDaniell, Zheng Liu, Anna M. Battenhouse, A. Bhinge, J. Lieb, L. Grasfeder, Kimberly A. Showers, P. Giresi, Seul K.C. Kim, Christopher Shestak, Florencia Pauli, Timothy E. Reddy, Jason Gertz, E. Partridge, Preti Jain, Rebekka O. Sprouse, A. Bansal, Barbara N. Pusey, M. Muratet, K. Varley, K. Bowling, Kimberly M. Newberry, Amy S. Nesmith, Jason A. Dilocker, S. Parker, L. Waite, Krista S. Thibeault, Kevin Roberts, D. Absher, A. Mortazavi, B. Williams, G. Marinov, Diane Trout, Brandon King, Kenneth McCue, Anthony Kirilusha, Gilberto Desalvo, Katherine Fisher, Henry Amrhein, S. Pepke, J. Vielmetter, G. Sherlock, A. Sidow, S. Batzoglou, Rami Rauch, A. Kundaje, Maxwell W. Libbrecht, E. Margulies, Stephen C. J. Parker, L. Elnitski, E. Green, T. Hubbard, J. Harrow, S. Searle, F. Kokocinski, B. Aken, A. Frankish, T. Hunt, Gloria Despacio-Reyes, M. Kay, Gaurab Mukherjee, A. Bignell, Gary Saunders, Veronika Boychenko, M. Brent, M. Baren, Randall H. Brown, M. Gerstein, Ekta Khurana, S. Balasubramanian, Hugo Y. K. Lam, Philip Cayting, R. Robilotto, Z. Lu, T. Derrien, Andrea Tanzer, David G. Knowles, M. Mariotti, D. Haussler, R. Harte, M. Diekhans, A. Valencia, M. Tress, S. Landt, D. Raha, Minyi Shi, G. Euskirchen, Fabian Grubert, Maya Kasowski, Jin Lian, P. Lacroute, Youhan Xu, Hannah Monahan, Dorrelyn Patacsil, T. Slifer, Xinqiong Yang, Alexandra E. Charos, Brian D. Reed, Linfeng Wu, Raymond K. Auerbach, L. Habegger, M. Hariharan, J. Rozowsky, A. Abyzov, S. Weissman, K. Struhl, Nathan Lamarre-Vincent, Marianne Lindahl-Allen, B. Miotto, Z. Moqtaderi, J. D. Fleming, P. Newburger, P. Farnham, S. Frietze, H. O’Geen, Xiaoqin Xu, Kimberly R. Blahnik, Alina R. Cao, Sushma Iyengar, R. Kaul, R. Thurman, Hao Wang, P. Navas, R. Sandstrom, P. Sabo, M. Weaver, T. Canfield, Kristen Lee, Shane J. Neph, Vaughan Roach, Alex P. Reynolds, Audra K. Johnson, Eric Rynes, Erika Giste, Shinny Vong, Jun Neri, Tristan Frum, Eric D Nguyen, Abigail K. Ebersol, Minerva E. Sanchez, Hadar H. Sheffer, D. Lotakis, E. Haugen, R. Humbert, T. Kutyavin, Tony Shafer, William Stafford Noble, J. Dekker, B. Lajoie, Amartya Sanyal, K. Rosenbloom, T. Dreszer, B. Raney, G. Barber, L. Meyer, C. A. Sloan, V. Malladi, M. Cline, K. Learned, Vanessa Swing, A. Zweig, B. Rhead, P. Fujita, K. Roskin, D. Karolchik, R. Kuhn, S. Wilder, D. Sobral, Javier Herrero, Kathryn M Beal, M. Lukk, A. Brazma, Juan M. Vaquerizas, N. Luscombe, P. Bickel, Nathan Boley, James B. Brown, Qunhua Li, Haiyan Huang, A. Sboner, Kevin Y. Yip, Chao Cheng, Koon-Kiu Yan, N. Bhardwaj, Jing Wang, L. Lochovsky, J. Jee, Theodore Gibson, Jing Leng, Jiang Du, Robert S. Harris, Giltae Song, W. Miller, Bernard B. Suh, B. Paten, M. M. Hoffman, Orion J. Buske, Z. Weng, Xianjun Dong, Jie Wang, H. Xi, S. Tenenbaum, F. Doyle, S. Chittur, L. O. Penalva, T. Tullius, K. White, S. Karmakar, Alec Victorsen, Nader Jameel, N. Bild, R. Grossman, P. Collins, N. Trinklein, Morgan C. Giddings, Jainab Khatun, Christopher W. Maier, Ting Wang, T. Whitfield, Xian Chen, Yanbao Yu, H. Gunawardena, E. Feingold, R. Lowdon, Laura A. L. Dillon, P. Good, B. Risk
10 2011
10
🐜
🐜 An encyclopedia of mouse DNA elements (Mouse ENCODE)
85 auth. J. Stamatoyannopoulos, M. Snyder, R. Hardison, B. Ren, T. Gingeras, D. Gilbert, M. Groudine, M. Bender, R. Kaul, T. Canfield, Erica Giste, Audra K. Johnson, Mia Zhang, Gayathri Balasundaram, Rachel Byron, ... Vaughan Roach, P. Sabo, R. Sandstrom, A. Stehling, R. Thurman, S. Weissman, Philip Cayting, M. Hariharan, Jin Lian, S. Landt, Zhihai Ma, B. Wold, J. Dekker, G. Crawford, C. Keller, Weisheng Wu, Christopher C Morrissey, Swathi A. Kumar, Tejaswini Mishra, D. Jain, M. Byrska-Bishop, Daniel J. Blankenberg, Bryan R Lajoie1, Gaurav Jain, Amartya Sanyal, Kaun-Bei Chen, Olgert Denas, James Taylor, G. Blobel, M. Weiss, M. Pimkin, Wulan Deng, G. Marinov, B. Williams, Katherine I. Fisher-Aylor, Gilberto Desalvo, Anthony Kiralusha, Diane Trout, Henry Amrhein, A. Mortazavi, Lee E. Edsall, David F. McCleary, Samantha Kuan, Yin Shen, Feng Yue, Z. Ye, Carrie A. Davis, C. Zaleski, Sonali Jha, Chenghai Xue, A. Dobin, Wei Lin, Meagan Fastuca, Huaien Wang, R. GuigΓ³, S. Djebali, Julien Lagarde, T. Ryba, Takayo Sasaki, V. Malladi, M. Cline, V. Kirkup, K. Learned, K. Rosenbloom, W. Kent, E. Feingold, P. Good, M. Pazin, R. Lowdon, Leslie B. Adams
8 2012
8
🐜
🐜 An atlas of dynamic chromatin landscapes in mouse fetal development
54 auth. David U. Gorkin, David U. Gorkin, I. Barozzi, I. Barozzi, Yuan Zhao, Yuan Zhao, Yanxiao Zhang, Hui Huang, Hui Huang, Ah Young Lee, Bin Li, Joshua Chiou, Andre Wildberg, Bo Ding, Bo Zhang, ... Mengchi Wang, J. Strattan, Jean M. Davidson, Yunjiang Qiu, Yunjiang Qiu, Veena Afzal, J. Akiyama, I. Plajzer-Frick, Catherine S. Novak, Momoe Kato, Tyler H. Garvin, Quan T. Pham, Anne N. Harrington, B. Mannion, Elizabeth Lee, Yoko Fukuda-Yuzawa, Yupeng He, Yupeng He, S. Preissl, S. Preissl, Sora Chee, Jee Yun Han, B. Williams, Diane Trout, Henry Amrhein, Hongbo Yang, J. Cherry, Wei Wang, K. Gaulton, J. Ecker, Yin Shen, D. Dickel, A. Visel, A. Visel, A. Visel, L. Pennacchio, L. Pennacchio, L. Pennacchio, B. Ren
8 2020
8
🐜
🐜 The changing mouse embryo transcriptome at whole tissue and single-cell resolution
16 auth. Peng He, B. Williams, Diane Trout, G. Marinov, Henry Amrhein, L. Berghella, Say-Tar Goh, I. Plajzer-Frick, Veena Afzal, L. Pennacchio, ... D. Dickel, A. Visel, B. Ren, R. Hardison, Yu Zhang, B. Wold
7 2020
7
🐜
🐜 Perspectives on ENCODE
501 auth. F. Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal, Bronwen L. Aken, Rizi Ai, J. Akiyama, O. A. Jammal, Henry Amrhein, S. Anderson, Gregory Andrews, I. Antoshechkin, K. Ardlie, J. Armstrong, ... Matthew Astley, Budhaditya Banerjee, Amira A. Barkal, If H. A. Barnes, I. Barozzi, D. Barrell, Gemma Barson, Daniel Bates, Ulugbek K. Baymuradov, C. Bazile, Michael A. Beer, Samantha P. Beik, M. Bender, Ruth Bennett, L. Bouvrette, Bradley E. Bernstein, Andrew E. Berry, A. Bhaskar, A. Bignell, S. Blue, D. Bodine, C. Boix, Nathan Boley, Tyler Borrman, Beatrice Borsari, A. Boyle, Laurel A. Brandsmeier, A. Breschi, E. Bresnick, Jason A. Brooks, Michael Buckley, C. Burge, Rachel Byron, Eileen W. Cahill, Lingling Cai, Lulu Cao, Mark Carty, R. Castanon, Andres Castillo, H. Chaib, Esther T. Chan, Daniel R. Chee, Sora Chee, Huaming Chen, Jia-Yu Chen, Songjie Chen, J. M. Cherry, S. Chhetri, J. Choudhary, Jacqueline Chrast, Dongjun Chung, Declan Clarke, Neal A. L. Cody, Candice J. Coppola, J. Coursen, A. D'Ippolito, S. Dalton, Cassidy Danyko, C. Davidson, J. DÑvila-Velderrain, Carrie A. Davis, J. Dekker, A. Deran, Gilberto Desalvo, Gloria Despacio-Reyes, Colin N. Dewey, D. Dickel, Morgan Diegel, M. Diekhans, V. Dileep, Bo Ding, S. Djebali, A. Dobin, Daniel Dominguez, S. Donaldson, J. Drenkow, T. Dreszer, Y. Drier, M. Duff, D. Dunn, Catharine L. Eastman, J. Ecker, Matthew D. Edwards, Nicole C. El-Ali, Shaimae I. Elhajjajy, Keri Elkins, A. Emili, C. Epstein, Rachel C. Evans, Iakes Ezkurdia, K. Fan, P. Farnham, Nina P. Farrell, E. Feingold, Anne-Maud Ferreira, Katherine I. Fisher-Aylor, Stephen Fitzgerald, Paul Flicek, Chuan-Sheng Foo, K. Fortier, A. Frankish, Peter Freese, Shaliu Fu, Xiang-Dong Fu, Yu Fu, Yoko Fukuda-Yuzawa, M. Fulciniti, Alister P. W. Funnell, I. Gabdank, Timur Galeev, M. Gao, C. G. Girón, Tyler H. Garvin, C. Gelboin-Burkhart, G. Georgolopoulos, M. Gerstein, B. Giardine, D. Gifford, D. Gilbert, Daniel A. Gilchrist, Shawn M. Gillespie, T. Gingeras, Peng Gong, Alvaro J. GonzÑlez, J. Gonzalez, P. Good, A. Goren, David U. Gorkin, B. Graveley, Michael Gray, J. Greenblatt, Ed Griffiths, M. Groudine, Fabian Grubert, Mengting Gu, R. Guigó, Hongbo Guo, Gamze Gursoy, M. Gutierrez-Arcelus, J. Halow, R. Hardison, Matthew Hardy, M. Hariharan, A. Harmanci, Anne N. Harrington, J. Harrow, Tatsunori B. Hashimoto, R. Hasz, Meital Hatan, E. Haugen, J. Hayes, Peng He, Yupeng He, Nastaran Heidari, David Hendrickson, Elisabeth F. Heuston, J. Hilton, B. Hitz, Abigail Hochman, Cory Holgren, Lei Hou, Shuyu Hou, Y. Hsiao, Shan-Chun Hsu, Hui Huang, T. Hubbard, Jack Huey, Timothy R. Hughes, T. Hunt, S. Ibarrientos, Robbyn Issner, M. Iwata, Osagie G. Izuogu, T. Jaakkola, Nader Jameel, Camden Jansen, Lixia Jiang, Peng Jiang, Audra K. Johnson, Rory Johnson, Irwin Jungreis, Madhura Kadaba, Maya Kasowski, M. Kasparian, Momoe Kato, R. Kaul, T. Kawli, M. Kay, Judy C. Keen, S. Keleş, C. Keller, D. Kelley, Manolis Kellis, Pouya Kheradpour, Daniel S. Kim, Anthony Kirilusha, R. Klein, B. Knoechel, Samantha Kuan, M. Kulik, Sushant Kumar, A. Kundaje, T. Kutyavin, Julien Lagarde, B. Lajoie, Nicole J. Lambert, John E Lazar, Ah Young Lee, Donghoon Lee, Elizabeth Lee, Jin-Wook Lee, Kristen Lee, C. Leslie, Shawn E. Levy, Bin Li, Hai-Ri Li, Nan Li, Shantao Li, Xiangrui Li, Yining Li, Jin Lian, Maxwell W. Libbrecht, Shin Lin, Y. Lin, Dianbo Liu, Jason Liu, Peng Liu, Tingting Liu, X. Liu, Yaping Liu, Maria Long, S. Lou, J. Loveland, Aiping Lu, Yuheng Lu, Eric Lécuyer, Lijia Ma, M. Mackiewicz, B. Mannion, M. Mannstadt, Deepa Manthravadi, G. Marinov, Fergal J. Martin, E. Mattei, Kenneth McCue, Megan McEown, G. McVicker, Sarah K. Meadows, A. Meissner, E. Mendenhall, C. L. Messer, W. Meuleman, Clifford A. Meyer, Steve Miller, Matthew G. Milton, Tejaswini Mishra, Dianna E. Moore, H. M. Moore, Samuel H. Moore, Jennifer R. Moran, A. Mortazavi, Jonathan M. Mudge, N. Munshi, Rabi Murad, R. Myers, V. Nandakumar, Preetha Nandi, A. Narasimha, Aditi K. Narayanan, H. Naughton, FÑbio C. P. Navarro, P. Navas, Jurijs Nazarovs, Jemma Nelson, Shane J. Neph, Fidencio J. Neri, Joseph R. Nery, Amy R. Nesmith, J. S. Newberry, Kimberly M. Newberry, Vu Ngo, R. Nguyen, Tung Nguyen, Andrew Nishida, W. S. Noble, Catherine S. Novak, E. Novoa, Briana Nuñez, C. W. O'Donnell, S. Olson, Kathrina C. Onate, Ericka Otterman, Hakan Ozadam, Michael Pagan, T. Palden, X. Pan, Yongjin P. Park, E. Partridge, B. Paten, Florencia Pauli-Behn, M. Pazin, Baikang Pei, L. Pennacchio, Alexander R. Perez, Emily Perry, D. Pervouchine, Nishigandha Phalke, Quan T. Pham, D. H. Phanstiel, I. Plajzer-Frick, G. Pratt, H. Pratt, S. Preissl, J. Pritchard, Y. Pritykin, Michael J. Purcaro, Qian Qin, Giovanni Quinones-Valdez, Ines Rabano, Ernest Radovani, Anil Raj, N. Rajagopal, Oren Ram, L. Ramírez, Ricardo N. Ramirez, D. Rausch, S. Raychaudhuri, Joseph Raymond, Rozita Razavi, Timothy E. Reddy, Thomas M. Reimonn, Bing Ren, A. Reymond, Alex P. Reynolds, S. Rhie, Johannes Rinn, Miguel Rivera, J. Rivera-Mulia, Brian S. Roberts, J. Rodríguez, J. Rozowsky, Russell Ryan, Eric Rynes, Denis Salins, R. Sandstrom, Takayo Sasaki, S. Sathe, D. Savic, A. Scavelli, J. Scheiman, Christoph N. Schlaffner, J. Schloss, F. Schmitges, L. See, A. Sethi, M. Setty, A. Shafer, Shuo Shan, Eilon Sharon, Quan Shen, Yin Shen, R. Sherwood, Minyi Shi, Sunyoung Shin, N. Shoresh, Kyle T. Siebenthall, Cristina Sisu, T. Slifer, C. A. Sloan, Anna M. Smith, V. Snetkova, Michael P. Snyder, D. Spacek, Sharanya Srinivasan, R. Srivas, G. Stamatoyannopoulos, J. Stamatoyannopoulos, Rebecca Stanton, D. Steffan, Sandra Stehling-Sun, J. Strattan, Amanda Su, B. Sundararaman, M. Suner, Tahin Syed, Matt Szynkarek, Forrest Tanaka, D. Tenen, Mingxiang Teng, Jeffrey A. Thomas, David E. Toffey, M. Tress, Diane Trout, G. Trynka, J. Tsuji, S. Upchurch, Oana Ursu, Barbara Uszczynska-Ratajczak, Mia C. Uziel, A. Valencia, B. V. Biber, A. van der Velde, Eric L. Van Nostrand, Yekaterina Vaydylevich, Jesús VÑzquez, Alec Victorsen, J. Vielmetter, J. Vierstra, A. Visel, A. Vlasova, Christopher M. Vockley, S. Volpi, Shinny Vong, Hao Wang, Mengchi Wang, Qin Wang, Ruth Wang, Tao Wang, Wen Wang, Xiao-feng Wang, Yanli Wang, N. Watson, Xintao Wei, Zhijie Wei, Hendrik Weisser, S. Weissman, Rene Welch, R. Welikson, Z. Weng, H. Westra, J. Whitaker, Collin G. White, Kevin P. White, Andre Wildberg, B. Williams, D. Wine, Heather Witt, B. Wold, Maxim Y Wolf, J. Wright, Rui Xiao, Xinshu Xiao, Jie Xu, Jinrui Xu, Koon-Kiu Yan, Yongqi Yan, Hongbo Yang, Xinqiong Yang, Yi-Wen Yang, G. Yardımcı, Brian A. Yee, Gene W. Yeo, Taylor Young, Tianxiong Yu, Feng Yue, C. Zaleski, C. Zang, Haoyang Zeng, Weihua Zeng, D. Zerbino, J. Zhai, L. Zhan, Y. Zhan, Bo Zhang, Jialing Zhang, Jing Zhang, Kaijie Zhang, Lijun Zhang, Peng Zhang, Qi Zhang, Xiao-ou Zhang, Yanxiao Zhang, Zhizhuo Zhang, Yuan Zhao, Ye Zheng, Guoqing Zhong, Xiao-Qiao Zhou, Yun Zhu, Jared Zimmerman, Michael P. Snyder, Bing Ren, R. Hardison, J. M. Cherry, Bradley E. Bernstein, E. Mendenhall, Paul Flicek
6 2020
6
🐜
🐜 A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantification
16 auth. D. Wyman, Gabriela Balderrama-Gutierrez, Fairlie Reese, Shan Jiang, Sorena Rahmanian, S. Forner, D. Matheos, Weihua Zeng, B. Williams, Diane Trout, ... W. England, Shu-Hui Chu, R. Spitale, A. Tenner, B. Wold, A. Mortazavi
6 2019
6
🐜
🐜 Spatiotemporal DNA methylome dynamics of the developing mouse fetus
20 auth. Yupeng He, M. Hariharan, David U. Gorkin, D. Dickel, C. Luo, R. Castanon, Joseph R. Nery, Ah Young Lee, Yuan Zhao, Hui Huang, ... B. Williams, Diane Trout, Henry Amrhein, Rongxin Fang, Huaming Chen, Bin Li, A. Visel, L. Pennacchio, B. Ren, J. Ecker
6 2020
6
🐜
🐬 Mining gene expression data by interpreting principal components
J. Roden, Brandon King, Diane Trout, A. Mortazavi, B. Wold, Christopher E. Hart
6 2006
6
🐬
🐜 The ENCODE Uniform Analysis Pipelines
60 auth. B. Hitz, Jin-Wook Lee, Otto Jolanki, Meenakshi S. Kagda, Keenan Graham, Paul Sud, I. Gabdank, J. Seth Strattan, C. A. Sloan, T. Dreszer, Laurence D. Rowe, Nikhil R. Podduturi, V. Malladi, Esther T. Chan, Jean M. Davidson, ... Marcus Ho, S. Miyasato, Matt Simison, Forrest Tanaka, Yunhai Luo, Ian Whaling, Eurie L. Hong, Brian T. Lee, R. Sandstrom, Eric Rynes, Jemma Nelson, Andrew Nishida, A. Ingersoll, Michael Buckley, M. Frerker, Daniel S. Kim, Nathan Boley, Diane Trout, A. Dobin, Sorena Rahmanian, D. Wyman, Gabriela Balderrama-Gutierrez, Fairlie Reese, Neva C. Durand, O. Dudchenko, D. Weisz, Suhas S. P. Rao, Alyssa Blackburn, Dimos Gkountaroulis, Mahdi Sadr, M. Olshansky, Yossi Eliaz, D. Nguyen, Ivan D. Bochkov, M. Shamim, Ragini Mahajan, Erez Lieberman Aiden, T. Gingeras, S. Heath, M. Hirst, W. James Kent, A. Kundaje, A. Mortazavi, B. Wold, J. Cherry
5 2023
5
🐜
🐜 Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq
10 auth. Elisabeth Rebboah, Fairlie Reese, K. Williams, Gabriela Balderrama-Gutierrez, Cassandra J. McGill, Diane Trout, ... I. Rodriguez, H. Liang, B. Wold, A. Mortazavi
5 2021
5
🐜
🐜 Systematic mapping of chromatin state landscapes during mouse development
42 auth. David U. Gorkin, I. Barozzi, Yanxiao Zhang, Ah Young Lee, Bin Li, Yuan Zhao, Andre, Wildberg, Bo Ding, Bo Zhang, Mengchi Wang, J. Strattan, Jean M. Davidson, Yunjiang, Qiu, ... Veena Afzal, J. Akiyama, I. Plajzer-Frick, C. Pickle, Momoe Kato, Tyler H. Garvin, Quan T. Pham, Anne N. Harrington, B. Mannion, Elizabeth Lee, Yoko, Fukuda-Yuzawa, Yupeng He, S. Preissl, Sora Chee, Brian A. Williams, Diane Trout, Henry Amrhein, Hongbo Yang, J. M. Cherry, Yin Shen, J. Ecker, Wei Wang, D. Dickel, A. Visel, L. Pennacchio, B. Ren
4 2017
4
🐜