|
🐜
|
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
20 auth.
E. Afgan,
D. Baker,
Marius van den Beek,
Daniel J. Blankenberg,
Dave Bouvier,
Martin Čech,
J. Chilton,
Dave Clements,
Nate Coraor,
Carl Eberhard,
...
B. Grüning,
Aysam Guerler,
Jennifer Hillman-Jackson,
G. V. Kuster,
Eric Rasche,
N. Soranzo,
Nitesh Turaga,
James Taylor,
A. Nekrutenko,
Jeremy Goecks
|
11 |
2016 |
11
🐜
|
|
🐜
|
Galaxy: a platform for interactive large-scale genome analysis.
13 auth.
B. Giardine,
C. Riemer,
R. Hardison,
Richard Burhans,
L. Elnitski,
P. Shah,
Yi Zhang,
Daniel J. Blankenberg,
I. Albert,
James Taylor,
...
W. Miller,
W. Kent,
A. Nekrutenko
|
11 |
2005 |
11
🐜
|
|
🦁
|
Galaxy: A Web‐Based Genome Analysis Tool for Experimentalists
8 auth.
Daniel J. Blankenberg,
G. V. Kuster,
Nate Coraor,
G. Ananda,
R. Lazarus,
Mary E. Mangan,
...
A. Nekrutenko,
James Taylor
|
10 |
2010 |
10
🦁
|
|
🐜
|
Bioconda: sustainable and comprehensive software distribution for the life sciences
152 auth.
Ryan K. Dale,
B. Grüning,
A. Sjödin,
Jillian Rowe,
Brad A. Chapman,
C. Tomkins-Tinch,
Renan Valieris,
Bérénice Batut,
A. Caprez,
T. Cokelaer,
Dilmurat Yusuf,
Kyle A. Beauchamp,
K. Břinda,
Thomas Wollmann,
Gildas Le Corguillé,
...
D. Ryan,
A. Bretaudeau,
Y. Hoogstrate,
Brent S. Pedersen,
S. V. Heeringen,
Martin Raden,
Sebastian Luna-Valero,
N. Soranzo,
Matthias De Smet,
Greg Von Kuster,
Rory D. Kirchner,
L. Pantano,
Z. Charlop-Powers,
Kevin R. Thornton,
Marcel Martin,
Marius van den Beek,
Daniel Maticzka,
Milad Miladi,
S. Will,
Kévin Gravouil,
P. Unneberg,
C. Brueffer,
Clemens Blank,
V. Piro,
Joachim Wolff,
T. Antão,
Simon L. Gladman,
I. Shlyakhter,
M. de Hollander,
P. Mabon,
Wei Shen,
J. Boekel,
M. Holtgrewe,
Dave Bouvier,
J. D. de Ruiter,
Jennifer Cabral,
S. Choudhary,
N. Harding,
Robert Kleinkauf,
E. Enns,
Florian Eggenhofer,
Joseph M Brown,
P. Cock,
H. Timm,
Cristel G. Thomas,
Xiao-ou Zhang,
Matt Chambers,
Nitesh Turaga,
E. Seiler,
Colin J. Brislawn,
E. Pruesse,
Jörg Fallmann,
Jerome Kelleher,
Hai Nguyen,
Lance L. Parsons,
Zhuoqing Fang,
E. B. Stovner,
Nicholas Stoler,
Simon H. Ye,
Inken Wohlers,
Rick Farouni,
M. Freeberg,
James E. Johnson,
Marcel Bargull,
P. Kensche,
T. Webster,
J. Eppley,
C. Stahl,
Alexander S. Rose,
Alex P. Reynolds,
Liang Wang,
Xavier Garnier,
Simon Dirmeier,
Michael Knudsen,
James Taylor,
Avi Srivastava,
Vivek Rai,
Rasmus Agren,
Alexander Junge,
R. Guimera,
Aziz Khan,
S. Schmeier,
Guowei He,
Luca Pinello,
E. Hägglund,
Alexander S. Mikheyev,
J. Preussner,
Nicholas R. Waters,
Wei Li,
Jordi Capellades,
A. Chande,
Yuri Pirola,
Saskia D. Hiltemann,
M. Bendall,
Sourav Singh,
W. Dunn,
Alexandre Drouin,
Tomás Di Domenico,
Ino de Bruijn,
D. Larson,
D. Chicco,
Elena Grassi,
Giorgio Gonnella,
B. Jaivarsan,
Liya Wang,
F. Giacomoni,
Erik L. Clarke,
Daniel J. Blankenberg,
Camy Tran,
Robert Patro,
S. Laurent,
Matthew Gopez,
B. Sennblad,
J. Baaijens,
Philip A. Ewels,
Patrick R. Wright,
Oana M. Enache,
Pierrick Roger,
W. Dampier,
David Koppstein,
Upendra Kumar Devisetty,
T. Rausch,
MacIntosh G. Cornwell,
A. Salatino,
Julien Seiler,
Matthieu Jung,
E. Kornobis,
Fabio Cumbo,
David Lähnemann,
Bianca K. Stöcker,
O. Moskalenko,
D. Bogema,
M. Workentine,
S. Newhouse,
Felipe da Veiga Leprevost,
Kevin J. Arvai,
Johannes Köster
|
10 |
2018 |
10
🐜
|
|
🐢
|
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
20 auth.
E. Afgan,
D. Baker,
Bérénice Batut,
Marius van den Beek,
Dave Bouvier,
Martin Čech,
J. Chilton,
Dave Clements,
Nate Coraor,
B. Grüning,
...
Aysam Guerler,
Jennifer Hillman-Jackson,
Saskia D. Hiltemann,
V. Jalili,
H. Rasche,
Nicola Soranzo,
Jeremy Goecks,
James Taylor,
A. Nekrutenko,
Daniel J. Blankenberg
|
10 |
2018 |
10
🐢
|
|
🐜
|
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update
8 auth.
V. Jalili,
E. Afgan,
Qiang Gu,
Dave Clements,
Daniel J. Blankenberg,
Jeremy Goecks,
...
James Taylor,
A. Nekrutenko
|
9 |
2020 |
9
🐜
|
|
🐜
|
An encyclopedia of mouse DNA elements (Mouse ENCODE)
85 auth.
J. Stamatoyannopoulos,
M. Snyder,
R. Hardison,
B. Ren,
T. Gingeras,
D. Gilbert,
M. Groudine,
M. Bender,
R. Kaul,
T. Canfield,
Erica Giste,
Audra K. Johnson,
Mia Zhang,
Gayathri Balasundaram,
Rachel Byron,
...
Vaughan Roach,
P. Sabo,
R. Sandstrom,
A. Stehling,
R. Thurman,
S. Weissman,
Philip Cayting,
M. Hariharan,
Jin Lian,
S. Landt,
Zhihai Ma,
B. Wold,
J. Dekker,
G. Crawford,
C. Keller,
Weisheng Wu,
Christopher C Morrissey,
Swathi A. Kumar,
Tejaswini Mishra,
D. Jain,
M. Byrska-Bishop,
Daniel J. Blankenberg,
Bryan R Lajoie1,
Gaurav Jain,
Amartya Sanyal,
Kaun-Bei Chen,
Olgert Denas,
James Taylor,
G. Blobel,
M. Weiss,
M. Pimkin,
Wulan Deng,
G. Marinov,
B. Williams,
Katherine I. Fisher-Aylor,
Gilberto Desalvo,
Anthony Kiralusha,
Diane Trout,
Henry Amrhein,
A. Mortazavi,
Lee E. Edsall,
David F. McCleary,
Samantha Kuan,
Yin Shen,
Feng Yue,
Z. Ye,
Carrie A. Davis,
C. Zaleski,
Sonali Jha,
Chenghai Xue,
A. Dobin,
Wei Lin,
Meagan Fastuca,
Huaien Wang,
R. Guigó,
S. Djebali,
Julien Lagarde,
T. Ryba,
Takayo Sasaki,
V. Malladi,
M. Cline,
V. Kirkup,
K. Learned,
K. Rosenbloom,
W. Kent,
E. Feingold,
P. Good,
M. Pazin,
R. Lowdon,
Leslie B. Adams
|
8 |
2012 |
8
🐜
|
|
🐜
|
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
100 auth.
E. Afgan,
A. Nekrutenko,
B. Grüning,
Daniel J. Blankenberg,
Jeremy Goecks,
M. Schatz,
Alexander E. Ostrovsky,
Alexandru Mahmoud,
A. Lonie,
Anna Syme,
A. Fouilloux,
A. Bretaudeau,
Anup Kumar,
A. Eschenlauer,
Assunta D. Desanto,
...
Aysam Guerler,
Beatriz Serrano-Solano,
Bérénice Batut,
B. Langhorst,
Bridget Carr,
Bryan Raubenolt,
Cameron J. Hyde,
C. Bromhead,
Christopher B. Barnett,
Coline Royaux,
Cristóbal Gallardo,
Daniel Fornika,
D. Baker,
Dave Bouvier,
Dave Clements,
D. A. L. Morais,
D. Tabernero,
D. Larivière,
E. Nasr,
F. Zambelli,
Florian Heyl,
F. Psomopoulos,
Frederik Coppens,
Gareth R. Price,
G. Cuccuru,
Gildas Le Corguillé,
G. V. Kuster,
Gulsum Gudukbay,
H. Rasche,
H. Hotz,
Ignacio Eguinoa,
I. Makunin,
Isuru Ranawaka,
James Taylor,
Jayadev Joshi,
Jennifer Hillman-Jackson,
J. Chilton,
Kaivan Kamali,
Keith Suderman,
Krzysztof Poterlowicz,
Y. L. Bras,
Lucille Lopez-Delisle,
Luke Sargent,
Madeline E. Bassetti,
M. Tangaro,
Marius van den Beek,
Martin Čech,
Matthias Bernt,
Matthias Fahrner,
M. Tekman,
M. Föll,
M. Crusoe,
Miguel Roncoroni,
N. Kucher,
Nate Coraor,
Nicholas Stoler,
Nick Rhodes,
Nicola Soranzo,
Nikolett Pintér,
N. Goonasekera,
Pablo Moreno,
Pavankumar Videm,
Petera Melanie,
P. Mandreoli,
P. Jagtap,
Qiang Gu,
Ralf J. M. Weber,
Ross Lazarus,
R. Vorderman,
Saskia D. Hiltemann,
Sergey Golitsynskiy,
Shilpa Garg,
Simon A. Bray,
Simon L. Gladman,
Simone Leo,
Subina P. Mehta,
T. Griffin,
V. Jalili,
Y. Vandenbrouck,
Vi-Kwei Wen,
Vijaykrishna Nagampalli,
W. Bacon,
W. L. Koning,
Wolfgang Maier,
P. J. Briggs
|
8 |
2022 |
8
🐜
|
|
🐜
|
28-way vertebrate alignment and conservation track in the UCSC Genome Browser.
26 auth.
Webb Miller,
K. Rosenbloom,
R. Hardison,
Minmei Hou,
James Taylor,
B. Raney,
Richard Burhans,
D. King,
R. Baertsch,
Daniel J. Blankenberg,
Sergei L Kosakovsky Pond,
A. Nekrutenko,
B. Giardine,
Robert S. Harris,
Svitlana Tyekucheva,
...
M. Diekhans,
Tom H. Pringle,
William J. Murphy,
A. Lesk,
G. Weinstock,
Kerstin Lindblad-Toh,
Richard A. Gibbs,
Eric S. Lander,
Adam C. Siepel,
David Haussler,
W. Kent
|
8 |
2007 |
8
🐜
|
|
🐬
|
CloudMap: A Cloud-Based Pipeline for Analysis of Mutant Genome Sequences
G. Minevich,
Danny S. Park,
Daniel J. Blankenberg,
Richard J. Poole,
O. Hobert
|
8 |
2012 |
8
🐬
|
|
🦁
|
Dissemination of scientific software with Galaxy ToolShed
8 auth.
Daniel J. Blankenberg,
Greg Von Kuster,
Emil Bouvier,
D. Baker,
E. Afgan,
Nicholas Stoler,
...
James Taylor,
A. Nekrutenko
|
7 |
2014 |
7
🦁
|
|
🐜
|
Maternal age effect and severe germ-line bottleneck in the inheritance of human mitochondrial DNA
13 auth.
B. Rebolledo-Jaramillo,
M. Su,
Nicholas Stoler,
Jennifer A. McElhoe,
B. Dickins,
Daniel J. Blankenberg,
T. Korneliussen,
Francesca Chiaromonte,
R. Nielsen,
M. Holland,
...
I. Paul,
A. Nekrutenko,
K. Makova
|
7 |
2014 |
7
🐜
|
|
🦁
|
Manipulation of FASTQ data with Galaxy
Daniel J. Blankenberg,
Assaf Gordon,
G. V. Kuster,
Nathan Coraor,
James Taylor,
A. Nekrutenko
|
7 |
2010 |
7
🦁
|
