π
|
Topological Domains in Mammalian Genomes Identified by Analysis of Chromatin Interactions
9 auth.
Jesse R. Dixon,
Siddarth Selvaraj,
Feng Yue,
Audrey Kim,
Yan Li,
Yin Shen,
...
Ming Hu,
Jun S. Liu,
B. Ren
|
12 |
2012 |
12 π
|
π
|
A comparative encyclopedia of DNA elements in the mouse genome
133 auth.
Feng Yue,
A. Breschi,
J. Vierstra,
Weisheng Wu,
T. Ryba,
R. Sandstrom,
Zhihai Ma,
Carrie A. Davis,
Benjamin D. Pope,
Yin Shen,
D. Pervouchine,
S. Djebali,
B. Thurman,
R. Kaul,
Eric Rynes,
...
Anthony Kirilusha,
G. Marinov,
B. Williams,
Diane Trout,
Henry Amrhein,
Katherine I. Fisher-Aylor,
I. Antoshechkin,
Gilberto Desalvo,
L. See,
Meagan Fastuca,
J. Drenkow,
C. Zaleski,
A. Dobin,
Pablo Prieto,
Julien Lagarde,
G. Bussotti,
Andrea Tanzer,
Olgert Denas,
Kanwei Li,
M. Bender,
Miaohua Zhang,
Rachel Byron,
M. Groudine,
David F. McCleary,
L. Pham,
Z. Ye,
Samantha Kuan,
Lee E. Edsall,
Yi-Chieh Wu,
Matthew D. Rasmussen,
M. Bansal,
C. Keller,
Christapher S. Morrissey,
Tejaswini Mishra,
D. Jain,
Nergiz Dogan,
Robert S. Harris,
Philip Cayting,
T. Kawli,
A. Boyle,
G. Euskirchen,
A. Kundaje,
Shin Lin,
Yiing Lin,
Camden Jansen,
V. Malladi,
M. Cline,
Drew T. Erickson,
V. Kirkup,
K. Learned,
C. A. Sloan,
K. Rosenbloom,
Beatriz Lacerda de Sousa,
Kathryn M Beal,
M. Pignatelli,
P. Flicek,
Jin Lian,
Tamer Kahveci,
Dongwon Lee,
W. Kent,
Miguel Ramalho Santos,
Javier Herrero,
CΓ©dric Notredame,
Audra K. Johnson,
Shinny Vong,
Kristen Lee,
Daniel Bates,
Fidencio V. Neri,
Morgan Diegel,
Theresa Canfield,
P. Sabo,
M. Wilken,
T. Reh,
Erika Giste,
A. Shafer,
T. Kutyavin,
E. Haugen,
D. Dunn,
Alex P. Reynolds,
Shane J. Neph,
R. Humbert,
R. Hansen,
M. D. de Bruijn,
L. Selleri,
A. Rudensky,
Steven Z. Josefowicz,
R. Samstein,
E. Eichler,
S. Orkin,
D. Levasseur,
T. Papayannopoulou,
KaiβHsin Chang,
A. Skoultchi,
S. Gosh,
C. Disteche,
P. Treuting,
Yanli Wang,
M. Weiss,
G. Blobel,
P. Good,
R. Lowdon,
Leslie B. Adams,
Xiao-Qiao Zhou,
M. Pazin,
E. Feingold,
B. Wold,
James Taylor,
Manolis Kellis,
A. Mortazavi,
S. Weissman,
J. Stamatoyannopoulos,
M. Snyder,
R. GuigΓ³,
T. Gingeras,
D. Gilbert,
R. Hardison,
Michael A. Beer,
B. Ren
|
10 |
2014 |
10 π
|
π
|
Expanded encyclopaedias of DNA elements in the human and mouse genomes
63 auth.
Jill E. Moore,
Michael J. Purcaro,
H. Pratt,
C. Epstein,
N. Shoresh,
Jessika Adrian,
T. Kawli,
Carrie A. Davis,
A. Dobin,
R. Kaul,
J. Halow,
Eric L. Van Nostrand,
Peter Freese,
David U. Gorkin,
Yin Shen,
...
Yupeng He,
M. Mackiewicz,
Florencia Pauli-Behn,
B. Williams,
A. Mortazavi,
C. Keller,
Xiao-ou Zhang,
Shaimae I. Elhajjajy,
Jack Huey,
D. Dickel,
V. Snetkova,
Xintao Wei,
Xiao-feng Wang,
J. Rivera-Mulia,
J. Rozowsky,
Jing Zhang,
S. Chhetri,
Jialing Zhang,
Alec Victorsen,
K. White,
A. Visel,
Gene W. Yeo,
C. Burge,
Eric LΓ©cuyer,
D. Gilbert,
J. Dekker,
Johannes Rinn,
E. Mendenhall,
J. Ecker,
Manolis Kellis,
R. Klein,
W. S. Noble,
A. Kundaje,
R. GuigΓ³,
P. Farnham,
J. Cherry,
R. Myers,
B. Ren,
B. Graveley,
M. Gerstein,
L. Pennacchio,
Michael P. Snyder,
B. Bernstein,
B. Wold,
R. Hardison,
T. Gingeras,
J. Stamatoyannopoulos,
Z. Weng
|
10 |
2020 |
10 π
|
π
|
Chromatin architecture reorganization during stem cell differentiation
17 auth.
Jesse R. Dixon,
Inkyung Jung,
Siddarth Selvaraj,
Yin Shen,
Jessica Antosiewicz-Bourget,
Ah Young Lee,
Z. Ye,
Audrey Kim,
N. Rajagopal,
Wei Xie,
...
Yarui Diao,
Jing Liang,
Huimin Zhao,
Victor V Lobanenkov,
J. Ecker,
J. Thomson,
B. Ren
|
10 |
2015 |
10 π
|
π¦
|
A map of the cis-regulatory sequences in the mouse genome
11 auth.
Yin Shen,
Feng Yue,
David F. McCleary,
Z. Ye,
Lee E. Edsall,
Samantha Kuan,
...
Ulrich Wagner,
J. Dixon,
Leonard K. Lee,
Victor V Lobanenkov,
B. Ren
|
10 |
2012 |
10 π¦
|
π
|
Base-Resolution Analysis of 5-Hydroxymethylcytosine in the Mammalian Genome
14 auth.
Miao Yu,
G. Hon,
Keith E. Szulwach,
Chun-Xiao Song,
Liang Zhang,
Audrey Kim,
Xuekun Li,
Qing Dai,
Yin Shen,
Beomseok Park,
...
Jung-Hyun Min,
P. Jin,
B. Ren,
Chuan He
|
9 |
2012 |
9 π
|
π
|
An encyclopedia of mouse DNA elements (Mouse ENCODE)
85 auth.
J. Stamatoyannopoulos,
M. Snyder,
R. Hardison,
B. Ren,
T. Gingeras,
D. Gilbert,
M. Groudine,
M. Bender,
R. Kaul,
T. Canfield,
Erica Giste,
Audra K. Johnson,
Mia Zhang,
Gayathri Balasundaram,
Rachel Byron,
...
Vaughan Roach,
P. Sabo,
R. Sandstrom,
A. Stehling,
R. Thurman,
S. Weissman,
Philip Cayting,
M. Hariharan,
Jin Lian,
S. Landt,
Zhihai Ma,
B. Wold,
J. Dekker,
G. Crawford,
C. Keller,
Weisheng Wu,
Christopher C Morrissey,
Swathi A. Kumar,
Tejaswini Mishra,
D. Jain,
M. Byrska-Bishop,
Daniel J. Blankenberg,
Bryan R Lajoie1,
Gaurav Jain,
Amartya Sanyal,
Kaun-Bei Chen,
Olgert Denas,
James Taylor,
G. Blobel,
M. Weiss,
M. Pimkin,
Wulan Deng,
G. Marinov,
B. Williams,
Katherine I. Fisher-Aylor,
Gilberto Desalvo,
Anthony Kiralusha,
Diane Trout,
Henry Amrhein,
A. Mortazavi,
Lee E. Edsall,
David F. McCleary,
Samantha Kuan,
Yin Shen,
Feng Yue,
Z. Ye,
Carrie A. Davis,
C. Zaleski,
Sonali Jha,
Chenghai Xue,
A. Dobin,
Wei Lin,
Meagan Fastuca,
Huaien Wang,
R. GuigΓ³,
S. Djebali,
Julien Lagarde,
T. Ryba,
Takayo Sasaki,
V. Malladi,
M. Cline,
V. Kirkup,
K. Learned,
K. Rosenbloom,
W. Kent,
E. Feingold,
P. Good,
M. Pazin,
R. Lowdon,
Leslie B. Adams
|
8 |
2012 |
8 π
|
π
|
Adult tissue methylomes harbor epigenetic memory at embryonic enhancers
7 auth.
G. Hon,
N. Rajagopal,
Yin Shen,
David F. McCleary,
Feng Yue,
My D. Dang,
...
B. Ren
|
8 |
2013 |
8 π
|
π
|
An atlas of dynamic chromatin landscapes in mouse fetal development
54 auth.
David U. Gorkin,
David U. Gorkin,
I. Barozzi,
I. Barozzi,
Yuan Zhao,
Yuan Zhao,
Yanxiao Zhang,
Hui Huang,
Hui Huang,
Ah Young Lee,
Bin Li,
Joshua Chiou,
Andre Wildberg,
Bo Ding,
Bo Zhang,
...
Mengchi Wang,
J. Strattan,
Jean M. Davidson,
Yunjiang Qiu,
Yunjiang Qiu,
Veena Afzal,
J. Akiyama,
I. Plajzer-Frick,
Catherine S. Novak,
Momoe Kato,
Tyler H. Garvin,
Quan T. Pham,
Anne N. Harrington,
B. Mannion,
Elizabeth Lee,
Yoko Fukuda-Yuzawa,
Yupeng He,
Yupeng He,
S. Preissl,
S. Preissl,
Sora Chee,
Jee Yun Han,
B. Williams,
Diane Trout,
Henry Amrhein,
Hongbo Yang,
J. Cherry,
Wei Wang,
K. Gaulton,
J. Ecker,
Yin Shen,
D. Dickel,
A. Visel,
A. Visel,
A. Visel,
L. Pennacchio,
L. Pennacchio,
L. Pennacchio,
B. Ren
|
8 |
2020 |
8 π
|
π
|
A tiling1deletion based genetic screen for cis-regulatory element identification in mammalian cells
14 auth.
Yarui Diao,
Rongxin Fang,
Bin Li,
Z. Meng,
Juntao Yu,
Yunjiang Qiu,
Kimberly C. Lin,
Hui Huang,
Tristin Liu,
Ryan J. Marina,
...
Inkyung Jung,
Yin Shen,
K. Guan,
B. Ren
|
7 |
2017 |
7 π
|
π’
|
Mapping cis-Regulatory Chromatin Contacts in Neural Cells Links Neuropsychiatric Disorder Risk Variants to Target Genes
23 auth.
Michael Song,
Xiaoyu Yang,
Xingjie Ren,
Lenka Maliskova,
Bingkun Li,
Ian R Jones,
Chao Wang,
Fadi Jacob,
Kenneth Wu,
M. Traglia,
...
Tsz Wai Tam,
Kirsty Jamieson,
Si-Yao Lu,
G. Ming,
Yun Li,
Jun Yao,
L. Weiss,
Jesse R. Dixon,
Luke M. Judge,
B. Conklin,
Hongjun Song,
L. Gan,
Yin Shen
|
7 |
2019 |
7 π’
|
π
|
An atlas of gene regulatory elements in adult mouse cerebrum
28 auth.
Y. Li,
S. Preissl,
Xiaomeng Hou,
Ziyang Zhang,
Kai Zhang,
Yunjiang Qiu,
Olivier B. Poirion,
Bin Li,
Joshua Chiou,
Hanqing Liu,
A. Pinto-Duarte,
Naoki Kubo,
Xiaoyu Yang,
Rongxin Fang,
Xinxin Wang,
...
Jee Yun Han,
J. Lucero,
Yiming Yan,
Michael Miller,
Samantha Kuan,
David U. Gorkin,
K. Gaulton,
Yin Shen,
M. Nunn,
E. Mukamel,
M. Behrens,
J. Ecker,
B. Ren
|
7 |
2020 |
7 π
|
π
|
A new class of temporarily phenotypic enhancers identified by CRISPR/Cas9-mediated genetic screening
10 auth.
Yarui Diao,
Bin Li,
Z. Meng,
Inkyung Jung,
Ah Young Lee,
J. Dixon,
...
Lenka Maliskova,
K. Guan,
Yin Shen,
B. Ren
|
6 |
2016 |
6 π
|