BetterScholar BetterScholar
14
Role
Title
Level Year L/R
🦁 Mapping and quantifying mammalian transcriptomes by RNA-Seq
A. Mortazavi, B. Williams, Kenneth McCue, Lorian Schaeffer, B. Wold
13 2008
13
🦁
🐜 Landscape of transcription in human cells
85 auth. S. Djebali, Carrie A. Davis, A. Merkel, A. Dobin, T. Lassmann, A. Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, F. Schlesinger, Chenghai Xue, G. Marinov, Jainab Khatun, B. Williams, C. Zaleski, ... J. Rozowsky, M. Röder, F. Kokocinski, Rehab F Abdelhamid, T. Alioto, I. Antoshechkin, Michael T. Baer, Nadav S. Bar, P. Batut, K. Bell, I. Bell, S. Chakrabortty, Xian Chen, Jacqueline Chrast, João Curado, T. Derrien, J. Drenkow, E. Dumais, Jacqueline Dumais, R. Duttagupta, E. Falconnet, Meagan Fastuca, Katalin Fejes-Toth, Pedro G. Ferreira, S. Foissac, M. Fullwood, Hui Gao, David Gonzalez, Assaf Gordon, H. Gunawardena, C. Howald, Sonali Jha, Rory Johnson, P. Kapranov, Brandon King, C. Kingswood, O. J. Luo, Eddie Park, K. Persaud, Jonathan Preall, Paolo Ribeca, B. Risk, D. Robyr, M. Sammeth, Lorian Schaffer, L. See, Atif Shahab, Jørgen Skancke, A. Suzuki, Hazuki Takahashi, Hagen U. Tilgner, Diane Trout, Nathalie Walters, Huaien Wang, J. Wrobel, Yanbao Yu, Xiaoan Ruan, Y. Hayashizaki, J. Harrow, M. Gerstein, T. Hubbard, A. Reymond, S. Antonarakis, G. Hannon, Morgan C. Giddings, Y. Ruan, B. Wold, Piero Carninci, R. Guigó, T. Gingeras
12 2012
12
🐜
🐬 Genome-Wide Mapping of in Vivo Protein-DNA Interactions
David S. Johnson, A. Mortazavi, R. Myers, B. Wold
11 2007
11
🐬
🐢 A survey of best practices for RNA-seq data analysis
11 auth. A. Conesa, Pedro Madrigal, Sonia Tarazona, D. Gómez-Cabrero, A. Cervera, A. McPherson, ... M. Szcześniak, Daniel J. Gaffney, L. Elo, Xuegong Zhang, A. Mortazavi
11 2016
11
🐢
🐜 A comparative encyclopedia of DNA elements in the mouse genome
133 auth. Feng Yue, A. Breschi, J. Vierstra, Weisheng Wu, T. Ryba, R. Sandstrom, Zhihai Ma, Carrie A. Davis, Benjamin D. Pope, Yin Shen, D. Pervouchine, S. Djebali, B. Thurman, R. Kaul, Eric Rynes, ... Anthony Kirilusha, G. Marinov, B. Williams, Diane Trout, Henry Amrhein, Katherine I. Fisher-Aylor, I. Antoshechkin, Gilberto Desalvo, L. See, Meagan Fastuca, J. Drenkow, C. Zaleski, A. Dobin, Pablo Prieto, Julien Lagarde, G. Bussotti, Andrea Tanzer, Olgert Denas, Kanwei Li, M. Bender, Miaohua Zhang, Rachel Byron, M. Groudine, David F. McCleary, L. Pham, Z. Ye, Samantha Kuan, Lee E. Edsall, Yi-Chieh Wu, Matthew D. Rasmussen, M. Bansal, C. Keller, Christapher S. Morrissey, Tejaswini Mishra, D. Jain, Nergiz Dogan, Robert S. Harris, Philip Cayting, T. Kawli, A. Boyle, G. Euskirchen, A. Kundaje, Shin Lin, Yiing Lin, Camden Jansen, V. Malladi, M. Cline, Drew T. Erickson, V. Kirkup, K. Learned, C. A. Sloan, K. Rosenbloom, Beatriz Lacerda de Sousa, Kathryn M Beal, M. Pignatelli, P. Flicek, Jin Lian, Tamer Kahveci, Dongwon Lee, W. Kent, Miguel Ramalho Santos, Javier Herrero, Cédric Notredame, Audra K. Johnson, Shinny Vong, Kristen Lee, Daniel Bates, Fidencio V. Neri, Morgan Diegel, Theresa Canfield, P. Sabo, M. Wilken, T. Reh, Erika Giste, A. Shafer, T. Kutyavin, E. Haugen, D. Dunn, Alex P. Reynolds, Shane J. Neph, R. Humbert, R. Hansen, M. D. de Bruijn, L. Selleri, A. Rudensky, Steven Z. Josefowicz, R. Samstein, E. Eichler, S. Orkin, D. Levasseur, T. Papayannopoulou, Kai‐Hsin Chang, A. Skoultchi, S. Gosh, C. Disteche, P. Treuting, Yanli Wang, M. Weiss, G. Blobel, P. Good, R. Lowdon, Leslie B. Adams, Xiao-Qiao Zhou, M. Pazin, E. Feingold, B. Wold, James Taylor, Manolis Kellis, A. Mortazavi, S. Weissman, J. Stamatoyannopoulos, M. Snyder, R. Guigó, T. Gingeras, D. Gilbert, R. Hardison, Michael A. Beer, B. Ren
10 2014
10
🐜
🐜 Expanded encyclopaedias of DNA elements in the human and mouse genomes
63 auth. Jill E. Moore, Michael J. Purcaro, H. Pratt, C. Epstein, N. Shoresh, Jessika Adrian, T. Kawli, Carrie A. Davis, A. Dobin, R. Kaul, J. Halow, Eric L. Van Nostrand, Peter Freese, David U. Gorkin, Yin Shen, ... Yupeng He, M. Mackiewicz, Florencia Pauli-Behn, B. Williams, A. Mortazavi, C. Keller, Xiao-ou Zhang, Shaimae I. Elhajjajy, Jack Huey, D. Dickel, V. Snetkova, Xintao Wei, Xiao-feng Wang, J. Rivera-Mulia, J. Rozowsky, Jing Zhang, S. Chhetri, Jialing Zhang, Alec Victorsen, K. White, A. Visel, Gene W. Yeo, C. Burge, Eric Lécuyer, D. Gilbert, J. Dekker, Johannes Rinn, E. Mendenhall, J. Ecker, Manolis Kellis, R. Klein, W. S. Noble, A. Kundaje, R. Guigó, P. Farnham, J. Cherry, R. Myers, B. Ren, B. Graveley, M. Gerstein, L. Pennacchio, Michael P. Snyder, B. Bernstein, B. Wold, R. Hardison, T. Gingeras, J. Stamatoyannopoulos, Z. Weng
10 2020
10
🐜
🐜 Extensive Promoter-Centered Chromatin Interactions Provide a Topological Basis for Transcription Regulation
36 auth. Guoliang Li, Xiaoan Ruan, Raymond K. Auerbach, K. Sandhu, Meizhen Zheng, Ping Wang, H. Poh, Yufen Goh, Joanne Lim, Jingyao Zhang, Hui Shan Sim, Su Qin Peh, F. Mulawadi, C. T. Ong, Y. Orlov, ... Shuzhen Hong, Zhizhuo Zhang, S. Landt, D. Raha, G. Euskirchen, Chia-Lin Wei, W. Ge, Huaien Wang, Carrie A. Davis, Katherine I. Fisher-Aylor, A. Mortazavi, M. Gerstein, T. Gingeras, B. Wold, Y. Sun, M. Fullwood, E. Cheung, E. Liu, W. Sung, M. Snyder, Y. Ruan
10 2012
10
🐜
🐜 A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
314 auth. R. Myers, J. Stamatoyannopoulos, M. Snyder, I. Dunham, R. Hardison, B. Bernstein, T. Gingeras, W. Kent, E. Birney, B. Wold, G. Crawford, C. Epstein, N. Shoresh, J. Ernst, T. Mikkelsen, ... Pouya Kheradpour, Xiaolan Zhang, Li Wang, Robbyn Issner, Michael J. Coyne, Timothy J. Durham, Manching Ku, Thanh Truong, L. D. Ward, Robert C. Altshuler, Michael F. Lin, Manolis Kellis, Carrie A. Davis, P. Kapranov, A. Dobin, C. Zaleski, F. Schlesinger, P. Batut, S. Chakrabortty, Sonali Jha, Wei Lin, J. Drenkow, Huaien Wang, K. Bell, I. Bell, Hui Gao, E. Dumais, Jacqueline Dumais, S. Antonarakis, C. Ucla, C. Borel, R. Guigó, S. Djebali, Julien Lagarde, C. Kingswood, Paolo Ribeca, M. Sammeth, T. Alioto, A. Merkel, Hagen U. Tilgner, Piero Carninci, Y. Hayashizaki, T. Lassmann, Hazuki Takahashi, Rehab F Abdelhamid, G. Hannon, Katalin Fejes, Jonathan Preall, Assaf Gordon, V. Sotirova, A. Reymond, C. Howald, Emilie Aït Yahya Graison, Jacqueline Chrast, Y. Ruan, Xiaoan Ruan, Atif Shahab, W. Poh, Chia-Lin Wei, T. Furey, A. Boyle, Nathan C. Sheffield, Lingyun Song, Yoichiro Shibata, T. Vales, D. Winter, Zhancheng Zhang, D. London, Tian-yuan Wang, Damian Keefe, V. Iyer, Bum-Kyu Lee, Ryan McDaniell, Zheng Liu, Anna M. Battenhouse, A. Bhinge, J. Lieb, L. Grasfeder, Kimberly A. Showers, P. Giresi, Seul K.C. Kim, Christopher Shestak, Florencia Pauli, Timothy E. Reddy, Jason Gertz, E. Partridge, Preti Jain, Rebekka O. Sprouse, A. Bansal, Barbara N. Pusey, M. Muratet, K. Varley, K. Bowling, Kimberly M. Newberry, Amy S. Nesmith, Jason A. Dilocker, S. Parker, L. Waite, Krista S. Thibeault, Kevin Roberts, D. Absher, A. Mortazavi, B. Williams, G. Marinov, Diane Trout, Brandon King, Kenneth McCue, Anthony Kirilusha, Gilberto Desalvo, Katherine Fisher, Henry Amrhein, S. Pepke, J. Vielmetter, G. Sherlock, A. Sidow, S. Batzoglou, Rami Rauch, A. Kundaje, Maxwell W. Libbrecht, E. Margulies, Stephen C. J. Parker, L. Elnitski, E. Green, T. Hubbard, J. Harrow, S. Searle, F. Kokocinski, B. Aken, A. Frankish, T. Hunt, Gloria Despacio-Reyes, M. Kay, Gaurab Mukherjee, A. Bignell, Gary Saunders, Veronika Boychenko, M. Brent, M. Baren, Randall H. Brown, M. Gerstein, Ekta Khurana, S. Balasubramanian, Hugo Y. K. Lam, Philip Cayting, R. Robilotto, Z. Lu, T. Derrien, Andrea Tanzer, David G. Knowles, M. Mariotti, D. Haussler, R. Harte, M. Diekhans, A. Valencia, M. Tress, S. Landt, D. Raha, Minyi Shi, G. Euskirchen, Fabian Grubert, Maya Kasowski, Jin Lian, P. Lacroute, Youhan Xu, Hannah Monahan, Dorrelyn Patacsil, T. Slifer, Xinqiong Yang, Alexandra E. Charos, Brian D. Reed, Linfeng Wu, Raymond K. Auerbach, L. Habegger, M. Hariharan, J. Rozowsky, A. Abyzov, S. Weissman, K. Struhl, Nathan Lamarre-Vincent, Marianne Lindahl-Allen, B. Miotto, Z. Moqtaderi, J. D. Fleming, P. Newburger, P. Farnham, S. Frietze, H. O’Geen, Xiaoqin Xu, Kimberly R. Blahnik, Alina R. Cao, Sushma Iyengar, R. Kaul, R. Thurman, Hao Wang, P. Navas, R. Sandstrom, P. Sabo, M. Weaver, T. Canfield, Kristen Lee, Shane J. Neph, Vaughan Roach, Alex P. Reynolds, Audra K. Johnson, Eric Rynes, Erika Giste, Shinny Vong, Jun Neri, Tristan Frum, Eric D Nguyen, Abigail K. Ebersol, Minerva E. Sanchez, Hadar H. Sheffer, D. Lotakis, E. Haugen, R. Humbert, T. Kutyavin, Tony Shafer, William Stafford Noble, J. Dekker, B. Lajoie, Amartya Sanyal, K. Rosenbloom, T. Dreszer, B. Raney, G. Barber, L. Meyer, C. A. Sloan, V. Malladi, M. Cline, K. Learned, Vanessa Swing, A. Zweig, B. Rhead, P. Fujita, K. Roskin, D. Karolchik, R. Kuhn, S. Wilder, D. Sobral, Javier Herrero, Kathryn M Beal, M. Lukk, A. Brazma, Juan M. Vaquerizas, N. Luscombe, P. Bickel, Nathan Boley, James B. Brown, Qunhua Li, Haiyan Huang, A. Sboner, Kevin Y. Yip, Chao Cheng, Koon-Kiu Yan, N. Bhardwaj, Jing Wang, L. Lochovsky, J. Jee, Theodore Gibson, Jing Leng, Jiang Du, Robert S. Harris, Giltae Song, W. Miller, Bernard B. Suh, B. Paten, M. M. Hoffman, Orion J. Buske, Z. Weng, Xianjun Dong, Jie Wang, H. Xi, S. Tenenbaum, F. Doyle, S. Chittur, L. O. Penalva, T. Tullius, K. White, S. Karmakar, Alec Victorsen, Nader Jameel, N. Bild, R. Grossman, P. Collins, N. Trinklein, Morgan C. Giddings, Jainab Khatun, Christopher W. Maier, Ting Wang, T. Whitfield, Xian Chen, Yanbao Yu, H. Gunawardena, E. Feingold, R. Lowdon, Laura A. L. Dillon, P. Good, B. Risk
10 2011
10
🐜
🐢 Computation for ChIP-seq and RNA-seq studies
S. Pepke, B. Wold, A. Mortazavi
9 2009
9
🐢
🐜 An encyclopedia of mouse DNA elements (Mouse ENCODE)
85 auth. J. Stamatoyannopoulos, M. Snyder, R. Hardison, B. Ren, T. Gingeras, D. Gilbert, M. Groudine, M. Bender, R. Kaul, T. Canfield, Erica Giste, Audra K. Johnson, Mia Zhang, Gayathri Balasundaram, Rachel Byron, ... Vaughan Roach, P. Sabo, R. Sandstrom, A. Stehling, R. Thurman, S. Weissman, Philip Cayting, M. Hariharan, Jin Lian, S. Landt, Zhihai Ma, B. Wold, J. Dekker, G. Crawford, C. Keller, Weisheng Wu, Christopher C Morrissey, Swathi A. Kumar, Tejaswini Mishra, D. Jain, M. Byrska-Bishop, Daniel J. Blankenberg, Bryan R Lajoie1, Gaurav Jain, Amartya Sanyal, Kaun-Bei Chen, Olgert Denas, James Taylor, G. Blobel, M. Weiss, M. Pimkin, Wulan Deng, G. Marinov, B. Williams, Katherine I. Fisher-Aylor, Gilberto Desalvo, Anthony Kiralusha, Diane Trout, Henry Amrhein, A. Mortazavi, Lee E. Edsall, David F. McCleary, Samantha Kuan, Yin Shen, Feng Yue, Z. Ye, Carrie A. Davis, C. Zaleski, Sonali Jha, Chenghai Xue, A. Dobin, Wei Lin, Meagan Fastuca, Huaien Wang, R. Guigó, S. Djebali, Julien Lagarde, T. Ryba, Takayo Sasaki, V. Malladi, M. Cline, V. Kirkup, K. Learned, K. Rosenbloom, W. Kent, E. Feingold, P. Good, M. Pazin, R. Lowdon, Leslie B. Adams
8 2012
8
🐜
🐜 Regeneration of fat cells from myofibroblasts during wound healing
38 auth. M. Plikus, C. Guerrero-Juarez, Mayumi Ito, Y. Li, Priya H. Dedhia, Ying Zheng, Mengle Shao, Denise L. Gay, Raul Ramos, Tsai-Ching Hsi, J. Oh, Xiaojie Wang, A. Ramirez, Sara E. Konopelski, Arijh Elzein, ... Anne Wang, Rarinthip June Supapannachart, Hye-Lim Lee, Chae Ho Lim, A. Nace, Amy Guo, E. Treffeisen, T. Andl, Ricardo N. Ramirez, Rabi Murad, S. Offermanns, D. Metzger, P. Chambon, A. Widgerow, T. Tuan, A. Mortazavi, Rana K. Gupta, B. A. Hamilton, S. Millar, P. Seale, W. Pear, M. Lazar, G. Cotsarelis
8 2017
8
🐜
🐬 Dynamic Transformations of Genome-wide Epigenetic Marking and Transcriptional Control Establish T Cell Identity
Jingli Zhang, A. Mortazavi, B. Williams, B. Wold, E. Rothenberg
8 2012
8
🐬
🐜 SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification
19 auth. M. Tardaguila, Lorena de la Fuente, C. Martí, Cecile Pereira, Francisco J. Pardo-Palacios, Héctor del Risco, Marc Ferrell, Maravillas Mellado, Marissa G. Macchietto, K. Verheggen, ... Mariola J. Edelmann, Iakes Ezkurdia, Jesús Vázquez, M. Tress, A. Mortazavi, L. Martens, Susana Rodríguez-Navarro, V. Moreno-Manzano, A. Conesa
8 2017
8
🐜
🐜 Comparative Analysis of the Transcriptome across Distant Species
96 auth. Mark B. Gerstein, J. Rozowsky, Koon-Kiu Yan, Daifeng Wang, Chao Cheng, James B. Brown, Carrie A. Davis, L. Hillier, Cristina Sisu, Jingyi Jessica Li, Baikang Pei, A. Harmanci, Michael O. Duff, S. Djebali, Roger Alexander, ... B. Alver, Raymond K Auerbach, Kimberly Bell, Peter J. Bickel, Max E. Boeck, Nathan Boley, Benjamin W. Booth, L. Cherbas, P. Cherbas, Chao Di, A. Dobin, J. Drenkow, Brent Ewing, Gang Fang, Megan Fastuca, E. Feingold, A. Frankish, Guanjun Gao, Peter J. Good, R. Guigó, A. Hammonds, J. Harrow, R. Hoskins, C. Howald, Long Hu, Haiyan Huang, T. Hubbard, Chau Huynh, Sonali Jha, Dionna M. Kasper, Masaomi Kato, Thomas C. Kaufman, Robert R. Kitchen, Erik Ladewig, Julien Lagarde, Eric C. Lai, Jing Leng, Z. Lu, M. MacCoss, Gemma May, Rebecca M. McWhirter, Gennifer E. Merrihew, David M. Miller, A. Mortazavi, Rabi Murad, Brian Oliver, S. Olson, Peter J. Park, M. Pazin, Norbert Perrimon, D. Pervouchine, V. Reinke, A. Reymond, Garrett Robinson, A. Samsonova, Gary Saunders, F. Schlesinger, Anurag Sethi, Frank J. Slack, W. C. Spencer, Marcus H. Stoiber, Pnina Strasbourger, Andrea Tanzer, Owen A. Thompson, K. Wan, Guilin Wang, Huaien Wang, Kathie L. Watkins, Jiayu Wen, Kejia Wen, Chenghai Xue, Li Yang, Kevin Y. Yip, C. Zaleski, Yan Zhang, Henry Zheng, Steven E. Brenner, B. Graveley, S. Celniker, T. Gingeras, R. Waterston
8 2014
8
🐜