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A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
314 auth.
R. Myers,
J. Stamatoyannopoulos,
M. Snyder,
I. Dunham,
R. Hardison,
B. Bernstein,
T. Gingeras,
W. Kent,
E. Birney,
B. Wold,
G. Crawford,
C. Epstein,
N. Shoresh,
J. Ernst,
T. Mikkelsen,
...
Pouya Kheradpour,
Xiaolan Zhang,
Li Wang,
Robbyn Issner,
Michael J. Coyne,
Timothy J. Durham,
Manching Ku,
Thanh Truong,
L. D. Ward,
Robert C. Altshuler,
Michael F. Lin,
Manolis Kellis,
Carrie A. Davis,
P. Kapranov,
A. Dobin,
C. Zaleski,
F. Schlesinger,
P. Batut,
S. Chakrabortty,
Sonali Jha,
Wei Lin,
J. Drenkow,
Huaien Wang,
K. Bell,
I. Bell,
Hui Gao,
E. Dumais,
Jacqueline Dumais,
S. Antonarakis,
C. Ucla,
C. Borel,
R. Guigรณ,
S. Djebali,
Julien Lagarde,
C. Kingswood,
Paolo Ribeca,
M. Sammeth,
T. Alioto,
A. Merkel,
Hagen U. Tilgner,
Piero Carninci,
Y. Hayashizaki,
T. Lassmann,
Hazuki Takahashi,
Rehab F Abdelhamid,
G. Hannon,
Katalin Fejes,
Jonathan Preall,
Assaf Gordon,
V. Sotirova,
A. Reymond,
C. Howald,
Emilie Aรฏt Yahya Graison,
Jacqueline Chrast,
Y. Ruan,
Xiaoan Ruan,
Atif Shahab,
W. Poh,
Chia-Lin Wei,
T. Furey,
A. Boyle,
Nathan C. Sheffield,
Lingyun Song,
Yoichiro Shibata,
T. Vales,
D. Winter,
Zhancheng Zhang,
D. London,
Tian-yuan Wang,
Damian Keefe,
V. Iyer,
Bum-Kyu Lee,
Ryan McDaniell,
Zheng Liu,
Anna M. Battenhouse,
A. Bhinge,
J. Lieb,
L. Grasfeder,
Kimberly A. Showers,
P. Giresi,
Seul K.C. Kim,
Christopher Shestak,
Florencia Pauli,
Timothy E. Reddy,
Jason Gertz,
E. Partridge,
Preti Jain,
Rebekka O. Sprouse,
A. Bansal,
Barbara N. Pusey,
M. Muratet,
K. Varley,
K. Bowling,
Kimberly M. Newberry,
Amy S. Nesmith,
Jason A. Dilocker,
S. Parker,
L. Waite,
Krista S. Thibeault,
Kevin Roberts,
D. Absher,
A. Mortazavi,
B. Williams,
G. Marinov,
Diane Trout,
Brandon King,
Kenneth McCue,
Anthony Kirilusha,
Gilberto Desalvo,
Katherine Fisher,
Henry Amrhein,
S. Pepke,
J. Vielmetter,
G. Sherlock,
A. Sidow,
S. Batzoglou,
Rami Rauch,
A. Kundaje,
Maxwell W. Libbrecht,
E. Margulies,
Stephen C. J. Parker,
L. Elnitski,
E. Green,
T. Hubbard,
J. Harrow,
S. Searle,
F. Kokocinski,
B. Aken,
A. Frankish,
T. Hunt,
Gloria Despacio-Reyes,
M. Kay,
Gaurab Mukherjee,
A. Bignell,
Gary Saunders,
Veronika Boychenko,
M. Brent,
M. Baren,
Randall H. Brown,
M. Gerstein,
Ekta Khurana,
S. Balasubramanian,
Hugo Y. K. Lam,
Philip Cayting,
R. Robilotto,
Z. Lu,
T. Derrien,
Andrea Tanzer,
David G. Knowles,
M. Mariotti,
D. Haussler,
R. Harte,
M. Diekhans,
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M. Tress,
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D. Raha,
Minyi Shi,
G. Euskirchen,
Fabian Grubert,
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Jin Lian,
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Youhan Xu,
Hannah Monahan,
Dorrelyn Patacsil,
T. Slifer,
Xinqiong Yang,
Alexandra E. Charos,
Brian D. Reed,
Linfeng Wu,
Raymond K. Auerbach,
L. Habegger,
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J. Rozowsky,
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Z. Moqtaderi,
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Eric Rynes,
Erika Giste,
Shinny Vong,
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Eric D Nguyen,
Abigail K. Ebersol,
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Kathryn M Beal,
M. Lukk,
A. Brazma,
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N. Luscombe,
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James B. Brown,
Qunhua Li,
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Chao Cheng,
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R. Lowdon,
Laura A. L. Dillon,
P. Good,
B. Risk
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10 |
2011 |
10
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Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
16 auth.
Jie Wang,
Jiali Zhuang,
Sowmya Iyer,
Xinying Lin,
T. Whitfield,
Melissa C. Greven,
B. Pierce,
Xianjun Dong,
A. Kundaje,
Yong Cheng,
...
O. Rando,
E. Birney,
R. Myers,
William Stafford Noble,
Michael P. Snyder,
Z. Weng
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9 |
2012 |
9
๐
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Mbd3/NURD Complex Regulates Expression of 5-Hydroxymethylcytosine Marked Genes in Embryonic Stem Cells
9 auth.
Ozlem Yildirim,
Ruowang Li,
Jui-Hung Hung,
Poshen B. Chen,
Xianjun Dong,
Ly-sha Ee,
...
Z. Weng,
O. Rando,
T. Fazzio
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8 |
2011 |
8
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An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes.
11 auth.
X. Z. Li,
Christian K. Roy,
Xianjun Dong,
Ewelina Bolcun-Filas,
Jie Wang,
Bo W. Han,
...
Jia Xu,
M. Moore,
J. Schimenti,
Z. Weng,
P. Zamore
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8 |
2013 |
8
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ฮฒ2-Adrenoreceptor is a regulator of the ฮฑ-synuclein gene driving risk of Parkinsonโs disease
24 auth.
Shuchi Mittal,
Kjetil Bjรธrnevik,
D. Im,
A. Flierl,
Xianjun Dong,
J. Locascio,
K. Abo,
Elizabeth Long,
Ming Jin,
Bing Xu,
...
Y. Xiang,
J. Rochet,
A. Engeland,
P. Rizzu,
P. Heutink,
Tim Bartels,
D. Selkoe,
B. Caldarone,
M. Glicksman,
V. Khurana,
B. Schรผle,
David S. Park,
T. Riise,
C. Scherzer
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8 |
2017 |
8
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Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium
13 auth.
Jie Wang,
Jiali Zhuang,
Sowmya Iyer,
Xinying Lin,
Melissa C. Greven,
Bong-Hyun Kim,
Jill E. Moore,
B. Pierce,
Xianjun Dong,
Daniel Virgil,
...
E. Birney,
Jui-Hung Hung,
Z. Weng
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8 |
2012 |
8
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๐ฆ
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Modeling gene expression using chromatin features in various cellular contexts
11 auth.
Xianjun Dong,
Melissa C. Greven,
A. Kundaje,
S. Djebali,
James B. Brown,
Chao Cheng,
...
T. Gingeras,
M. Gerstein,
R. Guigรณ,
E. Birney,
Z. Weng
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8 |
2012 |
8
๐ฆ
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Exosome detection via the ultrafast-isolation system: EXODUS
12 auth.
Yuchao Chen,
Qingfu Zhu,
Liming Cheng,
Yong Wang,
M. Li,
Qinsi Yang,
...
Liang-Sheng Hu,
Doudou Lou,
Jiaoyuan Li,
Xianjun Dong,
Luke P. Lee,
Fei Liu
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7 |
2021 |
7
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๐
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Understanding transcriptional regulation by integrative analysis of transcription factor binding data
19 auth.
Chao Cheng,
Roger P. Alexander,
Martin Renqiang Min,
Jing Leng,
Kevin Y. Yip,
J. Rozowsky,
Koon-Kiu Yan,
Xianjun Dong,
S. Djebali,
Y. Ruan,
...
Carrie A. Davis,
Piero Carninci,
Timo Lassman,
T. Gingeras,
R. Guigรณ,
E. Birney,
Z. Weng,
M. Snyder,
M. Gerstein
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7 |
2012 |
7
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Two independent transcription initiation codes overlap on vertebrate core promoters
17 auth.
Vanja Haberle,
Nan Li,
Yavor Hadzhiev,
C. Plessy,
C. Previti,
Chirag Nepal,
Jochen Gehrig,
Xianjun Dong,
A. Akalin,
A. Suzuki,
...
W. Ijcken,
O. Armant,
Marco Ferg,
U. Strรคhle,
Piero Carninci,
F. Mรผller,
B. Lenhard
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7 |
2014 |
7
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The correlation between histone modifications and gene expression.
Xianjun Dong,
Z. Weng
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7 |
2013 |
7
๐ฆ
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Transcriptional features of genomic regulatory blocks
9 auth.
A. Akalin,
David Fredman,
E. Arner,
Xianjun Dong,
J. Bryne,
Harukazu Suzuki,
...
C. Daub,
Y. Hayashizaki,
B. Lenhard
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6 |
2009 |
6
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