|
🐜
|
The accessible chromatin landscape of the human genome
58 auth.
R. Thurman,
Eric Rynes,
R. Humbert,
J. Vierstra,
Matthew T. Maurano,
E. Haugen,
Nathan C. Sheffield,
A. Stergachis,
Benjamin Vernot,
Kavita S Garg,
R. Sandstrom,
Daniel Bates,
T. Canfield,
Morgan Diegel,
D. Dunn,
...
Abigail K. Ebersol,
Tristan Frum,
Erika Giste,
Lisa Harding,
Audra K. Johnson,
Ericka M. Johnson,
T. Kutyavin,
B. Lajoie,
Bum-Kyu Lee,
Kristen Lee,
D. London,
D. Lotakis,
Shane J. Neph,
Fidencio J. Neri,
Eric D Nguyen,
Alex P. Reynolds,
V. Roach,
Alexias Safi,
Minerva E. Sanchez,
Amartya Sanyal,
A. Shafer,
Jeremy M. Simon,
Lingyun Song,
Shinny Vong,
M. Weaver,
Zhancheng Zhang,
Zhuzhu Zhang,
B. Lenhard,
M. Tewari,
M. Dorschner,
R. Hansen,
P. Navas,
G. Stamatoyannopoulos,
V. Iyer,
J. Lieb,
S. Sunyaev,
J. Akey,
P. Sabo,
R. Kaul,
T. Furey,
J. Dekker,
G. Crawford,
J. Stamatoyannopoulos
|
11 |
2012 |
11
🐜
|
|
🐜
|
A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
314 auth.
R. Myers,
J. Stamatoyannopoulos,
M. Snyder,
I. Dunham,
R. Hardison,
B. Bernstein,
T. Gingeras,
W. Kent,
E. Birney,
B. Wold,
G. Crawford,
C. Epstein,
N. Shoresh,
J. Ernst,
T. Mikkelsen,
...
Pouya Kheradpour,
Xiaolan Zhang,
Li Wang,
Robbyn Issner,
Michael J. Coyne,
Timothy J. Durham,
Manching Ku,
Thanh Truong,
L. D. Ward,
Robert C. Altshuler,
Michael F. Lin,
Manolis Kellis,
Carrie A. Davis,
P. Kapranov,
A. Dobin,
C. Zaleski,
F. Schlesinger,
P. Batut,
S. Chakrabortty,
Sonali Jha,
Wei Lin,
J. Drenkow,
Huaien Wang,
K. Bell,
I. Bell,
Hui Gao,
E. Dumais,
Jacqueline Dumais,
S. Antonarakis,
C. Ucla,
C. Borel,
R. Guigó,
S. Djebali,
Julien Lagarde,
C. Kingswood,
Paolo Ribeca,
M. Sammeth,
T. Alioto,
A. Merkel,
Hagen U. Tilgner,
Piero Carninci,
Y. Hayashizaki,
T. Lassmann,
Hazuki Takahashi,
Rehab F Abdelhamid,
G. Hannon,
Katalin Fejes,
Jonathan Preall,
Assaf Gordon,
V. Sotirova,
A. Reymond,
C. Howald,
Emilie Aït Yahya Graison,
Jacqueline Chrast,
Y. Ruan,
Xiaoan Ruan,
Atif Shahab,
W. Poh,
Chia-Lin Wei,
T. Furey,
A. Boyle,
Nathan C. Sheffield,
Lingyun Song,
Yoichiro Shibata,
T. Vales,
D. Winter,
Zhancheng Zhang,
D. London,
Tian-yuan Wang,
Damian Keefe,
V. Iyer,
Bum-Kyu Lee,
Ryan McDaniell,
Zheng Liu,
Anna M. Battenhouse,
A. Bhinge,
J. Lieb,
L. Grasfeder,
Kimberly A. Showers,
P. Giresi,
Seul K.C. Kim,
Christopher Shestak,
Florencia Pauli,
Timothy E. Reddy,
Jason Gertz,
E. Partridge,
Preti Jain,
Rebekka O. Sprouse,
A. Bansal,
Barbara N. Pusey,
M. Muratet,
K. Varley,
K. Bowling,
Kimberly M. Newberry,
Amy S. Nesmith,
Jason A. Dilocker,
S. Parker,
L. Waite,
Krista S. Thibeault,
Kevin Roberts,
D. Absher,
A. Mortazavi,
B. Williams,
G. Marinov,
Diane Trout,
Brandon King,
Kenneth McCue,
Anthony Kirilusha,
Gilberto Desalvo,
Katherine Fisher,
Henry Amrhein,
S. Pepke,
J. Vielmetter,
G. Sherlock,
A. Sidow,
S. Batzoglou,
Rami Rauch,
A. Kundaje,
Maxwell W. Libbrecht,
E. Margulies,
Stephen C. J. Parker,
L. Elnitski,
E. Green,
T. Hubbard,
J. Harrow,
S. Searle,
F. Kokocinski,
B. Aken,
A. Frankish,
T. Hunt,
Gloria Despacio-Reyes,
M. Kay,
Gaurab Mukherjee,
A. Bignell,
Gary Saunders,
Veronika Boychenko,
M. Brent,
M. Baren,
Randall H. Brown,
M. Gerstein,
Ekta Khurana,
S. Balasubramanian,
Hugo Y. K. Lam,
Philip Cayting,
R. Robilotto,
Z. Lu,
T. Derrien,
Andrea Tanzer,
David G. Knowles,
M. Mariotti,
D. Haussler,
R. Harte,
M. Diekhans,
A. Valencia,
M. Tress,
S. Landt,
D. Raha,
Minyi Shi,
G. Euskirchen,
Fabian Grubert,
Maya Kasowski,
Jin Lian,
P. Lacroute,
Youhan Xu,
Hannah Monahan,
Dorrelyn Patacsil,
T. Slifer,
Xinqiong Yang,
Alexandra E. Charos,
Brian D. Reed,
Linfeng Wu,
Raymond K. Auerbach,
L. Habegger,
M. Hariharan,
J. Rozowsky,
A. Abyzov,
S. Weissman,
K. Struhl,
Nathan Lamarre-Vincent,
Marianne Lindahl-Allen,
B. Miotto,
Z. Moqtaderi,
J. D. Fleming,
P. Newburger,
P. Farnham,
S. Frietze,
H. O’Geen,
Xiaoqin Xu,
Kimberly R. Blahnik,
Alina R. Cao,
Sushma Iyengar,
R. Kaul,
R. Thurman,
Hao Wang,
P. Navas,
R. Sandstrom,
P. Sabo,
M. Weaver,
T. Canfield,
Kristen Lee,
Shane J. Neph,
Vaughan Roach,
Alex P. Reynolds,
Audra K. Johnson,
Eric Rynes,
Erika Giste,
Shinny Vong,
Jun Neri,
Tristan Frum,
Eric D Nguyen,
Abigail K. Ebersol,
Minerva E. Sanchez,
Hadar H. Sheffer,
D. Lotakis,
E. Haugen,
R. Humbert,
T. Kutyavin,
Tony Shafer,
William Stafford Noble,
J. Dekker,
B. Lajoie,
Amartya Sanyal,
K. Rosenbloom,
T. Dreszer,
B. Raney,
G. Barber,
L. Meyer,
C. A. Sloan,
V. Malladi,
M. Cline,
K. Learned,
Vanessa Swing,
A. Zweig,
B. Rhead,
P. Fujita,
K. Roskin,
D. Karolchik,
R. Kuhn,
S. Wilder,
D. Sobral,
Javier Herrero,
Kathryn M Beal,
M. Lukk,
A. Brazma,
Juan M. Vaquerizas,
N. Luscombe,
P. Bickel,
Nathan Boley,
James B. Brown,
Qunhua Li,
Haiyan Huang,
A. Sboner,
Kevin Y. Yip,
Chao Cheng,
Koon-Kiu Yan,
N. Bhardwaj,
Jing Wang,
L. Lochovsky,
J. Jee,
Theodore Gibson,
Jing Leng,
Jiang Du,
Robert S. Harris,
Giltae Song,
W. Miller,
Bernard B. Suh,
B. Paten,
M. M. Hoffman,
Orion J. Buske,
Z. Weng,
Xianjun Dong,
Jie Wang,
H. Xi,
S. Tenenbaum,
F. Doyle,
S. Chittur,
L. O. Penalva,
T. Tullius,
K. White,
S. Karmakar,
Alec Victorsen,
Nader Jameel,
N. Bild,
R. Grossman,
P. Collins,
N. Trinklein,
Morgan C. Giddings,
Jainab Khatun,
Christopher W. Maier,
Ting Wang,
T. Whitfield,
Xian Chen,
Yanbao Yu,
H. Gunawardena,
E. Feingold,
R. Lowdon,
Laura A. L. Dillon,
P. Good,
B. Risk
|
10 |
2011 |
10
🐜
|
|
🐜
|
The chromatin accessibility landscape of primary human cancers
24 auth.
M. Corces,
Jeffrey M. Granja,
Shadi Shams,
Bryan H. Louie,
J. Seoane,
Wanding Zhou,
T. Silva,
C. Groeneveld,
Christopher K. Wong,
S. Cho,
...
Ansuman T. Satpathy,
Maxwell R Mumbach,
K. Hoadley,
A. G. Robertson,
Nathan C. Sheffield,
Ina Felau,
Mauro A. A. Castro,
B. Berman,
L. Staudt,
J. Zenklusen,
P. Laird,
C. Curtis,
W. Greenleaf,
Howard Y. Chang
|
9 |
2018 |
9
🐜
|
|
🐜
|
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity.
26 auth.
Lingyun Song,
Zhancheng Zhang,
L. Grasfeder,
A. Boyle,
P. Giresi,
Bum-Kyu Lee,
Nathan C. Sheffield,
S. Gräf,
M. Huss,
Damian Keefe,
Zheng Liu,
D. London,
Ryan McDaniell,
Yoichiro Shibata,
Kimberly A. Showers,
...
Jeremy M. Simon,
T. Vales,
Tian-yuan Wang,
D. Winter,
Zhuzhu Zhang,
N. Clarke,
E. Birney,
V. Iyer,
G. Crawford,
J. Lieb,
T. Furey
|
9 |
2011 |
9
🐜
|
|
🐬
|
ChIPmentation: fast, robust, low-input ChIP-seq for histones and transcription factors
Christian Schmidl,
André F. Rendeiro,
Nathan C. Sheffield,
C. Bock
|
8 |
2015 |
8
🐬
|
|
🐜
|
Single-Cell DNA Methylome Sequencing and Bioinformatic Inference of Epigenomic Cell-State Dynamics
7 auth.
M. Farlik,
Nathan C. Sheffield,
A. Nuzzo,
Paul Datlinger,
Andreas Schönegger,
J. Klughammer,
...
C. Bock
|
8 |
2015 |
8
🐜
|
|
🦁
|
LOLA: enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor
Nathan C. Sheffield,
C. Bock
|
8 |
2015 |
8
🦁
|
|
🐬
|
Predicting cell-type–specific gene expression from regions of open chromatin
Anirudh Natarajan,
G. Yardımcı,
Nathan C. Sheffield,
G. Crawford,
U. Ohler
|
8 |
2012 |
8
🐬
|
|
🐜
|
The DNA methylation landscape of glioblastoma disease progression shows extensive heterogeneity in time and space
54 auth.
J. Klughammer,
B. Kiesel,
T. Roetzer,
N. Fortelny,
A. Nemc,
K. Nenning,
J. Furtner,
Nathan C. Sheffield,
Paul Datlinger,
Nadine Peter,
M. Nowosielski,
Marco Augustin,
M. Mischkulnig,
T. Ströbel,
D. Alpár,
...
B. Ergüner,
M. Senekowitsch,
P. Moser,
C. Freyschlag,
J. Kerschbaumer,
C. Thomé,
A. Grams,
G. Stockhammer,
Melitta Kitzwoegerer,
S. Oberndorfer,
F. Marhold,
S. Weis,
J. Trenkler,
J. Buchroithner,
J. Pichler,
J. Haybaeck,
S. Krassnig,
Kariem Mahdy Ali,
G. von Campe,
F. Payer,
C. Sherif,
J. Preiser,
Thomas Hauser,
P. Winkler,
W. Kleindienst,
F. Würtz,
Tanisa Brandner-Kokalj,
M. Stultschnig,
S. Schweiger,
K. Dieckmann,
M. Preusser,
G. Langs,
B. Baumann,
E. Knosp,
G. Widhalm,
C. Marosi,
J. Hainfellner,
A. Woehrer,
C. Bock
|
7 |
2017 |
7
🐜
|
|
🦁
|
A Comparative Analysis of Mitochondrial Genomes in Coleoptera (Arthropoda: Insecta) and Genome Descriptions of Six New Beetles
Nathan C. Sheffield,
H. Song,
S. Cameron,
M. Whiting
|
7 |
2008 |
7
🦁
|
|
🦁
|
Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions
8 auth.
Nathan C. Sheffield,
R. Thurman,
Lingyun Song,
Alexias Safi,
J. Stamatoyannopoulos,
B. Lenhard,
...
G. Crawford,
T. Furey
|
7 |
2013 |
7
🦁
|
|
🦁
|
DNA methylation heterogeneity defines a disease spectrum in Ewing sarcoma
38 auth.
Nathan C. Sheffield,
G. Pierron,
J. Klughammer,
Paul Datlinger,
Andreas Schönegger,
M. Schuster,
J. Hadler,
D. Surdez,
D. Guillemot,
E. Lapouble,
P. Fréneaux,
J. Champigneulle,
R. Bouvier,
D. Walder,
I. Ambros,
...
C. Hutter,
Eva Sorz,
A. Amaral,
E. de Álava,
K. Schallmoser,
D. Strunk,
B. Rinner,
B. Liegl-Atzwanger,
B. Huppertz,
A. Leithner,
G. de Pinieux,
P. Terrier,
V. Laurence,
J. Michon,
R. Ladenstein,
W. Holter,
R. Windhager,
U. Dirksen,
P. Ambros,
O. Delattre,
H. Kovar,
C. Bock,
E. Tomazou
|
7 |
2017 |
7
🦁
|
