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Landscape of transcription in human cells
85 auth.
S. Djebali,
Carrie A. Davis,
A. Merkel,
A. Dobin,
T. Lassmann,
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Julien Lagarde,
Wei Lin,
F. Schlesinger,
Chenghai Xue,
G. Marinov,
Jainab Khatun,
B. Williams,
C. Zaleski,
...
J. Rozowsky,
M. Röder,
F. Kokocinski,
Rehab F Abdelhamid,
T. Alioto,
I. Antoshechkin,
Michael T. Baer,
Nadav S. Bar,
P. Batut,
K. Bell,
I. Bell,
S. Chakrabortty,
Xian Chen,
Jacqueline Chrast,
João Curado,
T. Derrien,
J. Drenkow,
E. Dumais,
Jacqueline Dumais,
R. Duttagupta,
E. Falconnet,
Meagan Fastuca,
Katalin Fejes-Toth,
Pedro G. Ferreira,
S. Foissac,
M. Fullwood,
Hui Gao,
David Gonzalez,
Assaf Gordon,
H. Gunawardena,
C. Howald,
Sonali Jha,
Rory Johnson,
P. Kapranov,
Brandon King,
C. Kingswood,
O. J. Luo,
Eddie Park,
K. Persaud,
Jonathan Preall,
Paolo Ribeca,
B. Risk,
D. Robyr,
M. Sammeth,
Lorian Schaffer,
L. See,
Atif Shahab,
Jørgen Skancke,
A. Suzuki,
Hazuki Takahashi,
Hagen U. Tilgner,
Diane Trout,
Nathalie Walters,
Huaien Wang,
J. Wrobel,
Yanbao Yu,
Xiaoan Ruan,
Y. Hayashizaki,
J. Harrow,
M. Gerstein,
T. Hubbard,
A. Reymond,
S. Antonarakis,
G. Hannon,
Morgan C. Giddings,
Y. Ruan,
B. Wold,
Piero Carninci,
R. Guigó,
T. Gingeras
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12 |
2012 |
12 🐜
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RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription
22 auth.
P. Kapranov,
Jill Cheng,
S. Dike,
D. Nix,
R. Duttagupta,
A. Willingham,
P. Stadler,
Jana Hertel,
J. Hackermüller,
I. Hofacker,
...
I. Bell,
E. Cheung,
J. Drenkow,
E. Dumais,
Sandeep Patel,
G. Helt,
M. Ganesh,
Srinka Ghosh,
A. Piccolboni,
V. Sementchenko,
H. Tammana,
T. Gingeras
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11 |
2007 |
11 🐜
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A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
314 auth.
R. Myers,
J. Stamatoyannopoulos,
M. Snyder,
I. Dunham,
R. Hardison,
B. Bernstein,
T. Gingeras,
W. Kent,
E. Birney,
B. Wold,
G. Crawford,
C. Epstein,
N. Shoresh,
J. Ernst,
T. Mikkelsen,
...
Pouya Kheradpour,
Xiaolan Zhang,
Li Wang,
Robbyn Issner,
Michael J. Coyne,
Timothy J. Durham,
Manching Ku,
Thanh Truong,
L. D. Ward,
Robert C. Altshuler,
Michael F. Lin,
Manolis Kellis,
Carrie A. Davis,
P. Kapranov,
A. Dobin,
C. Zaleski,
F. Schlesinger,
P. Batut,
S. Chakrabortty,
Sonali Jha,
Wei Lin,
J. Drenkow,
Huaien Wang,
K. Bell,
I. Bell,
Hui Gao,
E. Dumais,
Jacqueline Dumais,
S. Antonarakis,
C. Ucla,
C. Borel,
R. Guigó,
S. Djebali,
Julien Lagarde,
C. Kingswood,
Paolo Ribeca,
M. Sammeth,
T. Alioto,
A. Merkel,
Hagen U. Tilgner,
Piero Carninci,
Y. Hayashizaki,
T. Lassmann,
Hazuki Takahashi,
Rehab F Abdelhamid,
G. Hannon,
Katalin Fejes,
Jonathan Preall,
Assaf Gordon,
V. Sotirova,
A. Reymond,
C. Howald,
Emilie Aït Yahya Graison,
Jacqueline Chrast,
Y. Ruan,
Xiaoan Ruan,
Atif Shahab,
W. Poh,
Chia-Lin Wei,
T. Furey,
A. Boyle,
Nathan C. Sheffield,
Lingyun Song,
Yoichiro Shibata,
T. Vales,
D. Winter,
Zhancheng Zhang,
D. London,
Tian-yuan Wang,
Damian Keefe,
V. Iyer,
Bum-Kyu Lee,
Ryan McDaniell,
Zheng Liu,
Anna M. Battenhouse,
A. Bhinge,
J. Lieb,
L. Grasfeder,
Kimberly A. Showers,
P. Giresi,
Seul K.C. Kim,
Christopher Shestak,
Florencia Pauli,
Timothy E. Reddy,
Jason Gertz,
E. Partridge,
Preti Jain,
Rebekka O. Sprouse,
A. Bansal,
Barbara N. Pusey,
M. Muratet,
K. Varley,
K. Bowling,
Kimberly M. Newberry,
Amy S. Nesmith,
Jason A. Dilocker,
S. Parker,
L. Waite,
Krista S. Thibeault,
Kevin Roberts,
D. Absher,
A. Mortazavi,
B. Williams,
G. Marinov,
Diane Trout,
Brandon King,
Kenneth McCue,
Anthony Kirilusha,
Gilberto Desalvo,
Katherine Fisher,
Henry Amrhein,
S. Pepke,
J. Vielmetter,
G. Sherlock,
A. Sidow,
S. Batzoglou,
Rami Rauch,
A. Kundaje,
Maxwell W. Libbrecht,
E. Margulies,
Stephen C. J. Parker,
L. Elnitski,
E. Green,
T. Hubbard,
J. Harrow,
S. Searle,
F. Kokocinski,
B. Aken,
A. Frankish,
T. Hunt,
Gloria Despacio-Reyes,
M. Kay,
Gaurab Mukherjee,
A. Bignell,
Gary Saunders,
Veronika Boychenko,
M. Brent,
M. Baren,
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M. Gerstein,
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S. Balasubramanian,
Hugo Y. K. Lam,
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R. Robilotto,
Z. Lu,
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David G. Knowles,
M. Mariotti,
D. Haussler,
R. Harte,
M. Diekhans,
A. Valencia,
M. Tress,
S. Landt,
D. Raha,
Minyi Shi,
G. Euskirchen,
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Maya Kasowski,
Jin Lian,
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Youhan Xu,
Hannah Monahan,
Dorrelyn Patacsil,
T. Slifer,
Xinqiong Yang,
Alexandra E. Charos,
Brian D. Reed,
Linfeng Wu,
Raymond K. Auerbach,
L. Habegger,
M. Hariharan,
J. Rozowsky,
A. Abyzov,
S. Weissman,
K. Struhl,
Nathan Lamarre-Vincent,
Marianne Lindahl-Allen,
B. Miotto,
Z. Moqtaderi,
J. D. Fleming,
P. Newburger,
P. Farnham,
S. Frietze,
H. O’Geen,
Xiaoqin Xu,
Kimberly R. Blahnik,
Alina R. Cao,
Sushma Iyengar,
R. Kaul,
R. Thurman,
Hao Wang,
P. Navas,
R. Sandstrom,
P. Sabo,
M. Weaver,
T. Canfield,
Kristen Lee,
Shane J. Neph,
Vaughan Roach,
Alex P. Reynolds,
Audra K. Johnson,
Eric Rynes,
Erika Giste,
Shinny Vong,
Jun Neri,
Tristan Frum,
Eric D Nguyen,
Abigail K. Ebersol,
Minerva E. Sanchez,
Hadar H. Sheffer,
D. Lotakis,
E. Haugen,
R. Humbert,
T. Kutyavin,
Tony Shafer,
William Stafford Noble,
J. Dekker,
B. Lajoie,
Amartya Sanyal,
K. Rosenbloom,
T. Dreszer,
B. Raney,
G. Barber,
L. Meyer,
C. A. Sloan,
V. Malladi,
M. Cline,
K. Learned,
Vanessa Swing,
A. Zweig,
B. Rhead,
P. Fujita,
K. Roskin,
D. Karolchik,
R. Kuhn,
S. Wilder,
D. Sobral,
Javier Herrero,
Kathryn M Beal,
M. Lukk,
A. Brazma,
Juan M. Vaquerizas,
N. Luscombe,
P. Bickel,
Nathan Boley,
James B. Brown,
Qunhua Li,
Haiyan Huang,
A. Sboner,
Kevin Y. Yip,
Chao Cheng,
Koon-Kiu Yan,
N. Bhardwaj,
Jing Wang,
L. Lochovsky,
J. Jee,
Theodore Gibson,
Jing Leng,
Jiang Du,
Robert S. Harris,
Giltae Song,
W. Miller,
Bernard B. Suh,
B. Paten,
M. M. Hoffman,
Orion J. Buske,
Z. Weng,
Xianjun Dong,
Jie Wang,
H. Xi,
S. Tenenbaum,
F. Doyle,
S. Chittur,
L. O. Penalva,
T. Tullius,
K. White,
S. Karmakar,
Alec Victorsen,
Nader Jameel,
N. Bild,
R. Grossman,
P. Collins,
N. Trinklein,
Morgan C. Giddings,
Jainab Khatun,
Christopher W. Maier,
Ting Wang,
T. Whitfield,
Xian Chen,
Yanbao Yu,
H. Gunawardena,
E. Feingold,
R. Lowdon,
Laura A. L. Dillon,
P. Good,
B. Risk
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10 |
2011 |
10 🐜
|
🐜
|
Post-transcriptional processing generates a diversity of 5′-modified long and short RNAs
11 auth.
Katalin Fejes-Toth,
V. Sotirova,
R. Sachidanandam,
G. Assaf,
G. Hannon,
P. Kapranov,
...
S. Foissac,
A. Willingham,
R. Duttagupta,
E. Dumais,
T. Gingeras
|
8 |
2009 |
8 🐜
|
🐜
|
Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells
38 auth.
S. Djebali,
Julien Lagarde,
P. Kapranov,
Vincent Lacroix,
C. Borel,
Jonathan M. Mudge,
C. Howald,
S. Foissac,
C. Ucla,
Jacqueline Chrast,
Paolo Ribeca,
David Martin,
Ryan R. Murray,
Xinping Yang,
L. Ghamsari,
...
Chenwei Lin,
I. Bell,
E. Dumais,
J. Drenkow,
M. Tress,
J. Gelpí,
M. Orozco,
A. Valencia,
Nynke L. van Berkum,
B. Lajoie,
M. Vidal,
J. Stamatoyannopoulos,
P. Batut,
A. Dobin,
J. Harrow,
T. Hubbard,
J. Dekker,
A. Frankish,
K. Salehi-Ashtiani,
A. Reymond,
S. Antonarakis,
R. Guigó,
T. Gingeras
|
7 |
2012 |
7 🐜
|
🐜
|
Efficient targeted transcript discovery via array-based normalization of RACE libraries
22 auth.
S. Djebali,
P. Kapranov,
S. Foissac,
Julien Lagarde,
A. Reymond,
C. Ucla,
Carine Wyss,
J. Drenkow,
E. Dumais,
Ryan R. Murray,
...
Chenwei Lin,
D. Szeto,
F. Denoeud,
Miquel Calvo,
A. Frankish,
J. Harrow,
P. Makrythanasis,
M. Vidal,
K. Salehi-Ashtiani,
S. Antonarakis,
T. Gingeras,
R. Guigó
|
5 |
2008 |
5 🐜
|
🐜
|
Transcriptional landscape of the human and fly genomes: nonlinear and multifunctional modular model of transcriptomes.
18 auth.
A. Willingham,
S. Dike,
J. Cheng,
J. Manak,
I. Bell,
E. Cheung,
J. Drenkow,
E. Dumais,
R. Duttagupta,
M. Ganesh,
...
S. Ghosh,
G. Helt,
D. Nix,
A. Piccolboni,
V. Sementchenko,
H. Tammana,
P. Kapranov,
T. Gingeras
|
4 |
2006 |
4 🐜
|
🐜
|
Evidence for transcript networks composed of chimeric RNAs in human cells
82 auth.
S. Djebali,
Julien Lagarde,
S. Djebali,
Julien Lagarde,
P. Kapranov,
Vincent Lacroix,
C. Borel,
Jonathan M. Mudge,
C. Howald,
S. Foissac,
C. Ucla,
Jacqueline Chrast,
Paolo Ribeca,
David Marin,
Ryan R. Murray,
...
Xinping Yang,
Lila Ghamasari,
Chenwei Lin,
I. Bell,
E. Dumais,
J. Drenkow,
M. Tress,
J. Gelpí,
Lluis,
Modesto Orozco,
A. Valencia,
Nynke L. van Berkum,
B. Lajoie,
M. Vidal,
J. Stamatoyannopoulos,
P. Batut,
A. Dobin,
J. Harrow,
T. Hubbard,
Job Dekker,
A. Frankish,
K. Salehi-Ashtiani,
A. Reymond,
S. Antonarakis,
R. Guigó,
T. Gingeras,
P. Kapranov,
Vincent Lacroix,
C. Borel,
C. Howald,
S. Foissac,
C. Ucla,
Jacqueline Chrast,
Paolo Ribeca,
David Marin,
Xinping Yang,
Lila Ghamasari,
Chenwei Lin,
I. Bell,
E. Dumais,
J. Drenkow,
J. Gelpí,
Modesto Orozco,
A. Valencia,
M. Vidal,
P. Batut,
A. Dobin,
J. Harrow,
T. Hubbard,
Job Dekker,
A. Frankish,
K. Salehi-Ashtiani,
A. Reymond,
R. Guigó,
Thomas R Gingeras Comments,
Vincent a,
Lacroix,
Christelle b,
Borel,
Cé Dric Howald,
David Martin,
L. Ghamsari,
Josep Lluís Gelpí,
J. Stamatoyannopoulos,
R. Guigó,
Thomas Preiss,
John Curtin
|
0 |
2017 |
0 🐜
|
🐜
|
Evidence for transcript networks composed of chimeric RNAs in human cells
82 auth.
S. Djebali,
Julien Lagarde,
S. Djebali,
Julien Lagarde,
P. Kapranov,
Vincent Lacroix,
C. Borel,
Jonathan M. Mudge,
C. Howald,
S. Foissac,
C. Ucla,
Jacqueline Chrast,
Paolo Ribeca,
David Marin,
Ryan R. Murray,
...
Xinping Yang,
Lila Ghamasari,
Chenwei Lin,
I. Bell,
E. Dumais,
J. Drenkow,
M. Tress,
J. Gelpí,
Lluis,
Modesto Orozco,
A. Valencia,
Nynke L. van Berkum,
B. Lajoie,
M. Vidal,
J. Stamatoyannopoulos,
P. Batut,
A. Dobin,
J. Harrow,
T. Hubbard,
J. Dekker,
A. Frankish,
K. Salehi-Ashtiani,
A. Reymond,
S. Antonarakis,
R. Guigó,
T. Gingeras,
P. Kapranov,
Vincent Lacroix,
C. Borel,
C. Howald,
S. Foissac,
C. Ucla,
Jacqueline Chrast,
Paolo Ribeca,
David Marin,
Xinping Yang,
Lila Ghamasari,
Chenwei Lin,
I. Bell,
E. Dumais,
J. Drenkow,
J. Gelpí,
Modesto Orozco,
A. Valencia,
M. Vidal,
P. Batut,
A. Dobin,
J. Harrow,
T. Hubbard,
J. Dekker,
A. Frankish,
K. Salehi-Ashtiani,
A. Reymond,
R. Guigó,
Thomas R Gingeras Comments,
Vincent a,
Lacroix,
Christelle b,
Borel,
Cé Dric Howald,
David Martin,
L. Ghamsari,
Josep Lluís Gelpí,
J. Stamatoyannopoulos,
R. Guigó,
T. Preiss,
John Curtin
|
0 |
2014 |
0 🐜
|
🐜
|
Evidence for transcript networks composed of chimeric RNAs in human cells
82 auth.
S. Djebali,
Julien Lagarde,
S. Djebali,
Julien Lagarde,
P. Kapranov,
Vincent Lacroix,
C. Borel,
Jonathan M. Mudge,
C. Howald,
S. Foissac,
C. Ucla,
Jacqueline Chrast,
Paolo Ribeca,
David Marin,
Ryan R. Murray,
...
Xinping Yang,
Lila Ghamasari,
Chenwei Lin,
I. Bell,
E. Dumais,
J. Drenkow,
M. Tress,
J. Gelpí,
Lluis,
Modesto Orozco,
A. Valencia,
Nynke L. van Berkum,
B. Lajoie,
M. Vidal,
J. Stamatoyannopoulos,
P. Batut,
A. Dobin,
J. Harrow,
T. Hubbard,
J. Dekker,
A. Frankish,
K. Salehi-Ashtiani,
A. Reymond,
S. Antonarakis,
R. Guigó,
T. Gingeras,
P. Kapranov,
Vincent Lacroix,
C. Borel,
C. Howald,
S. Foissac,
C. Ucla,
Jacqueline Chrast,
Paolo Ribeca,
David Marin,
Xinping Yang,
Lila Ghamasari,
Chenwei Lin,
I. Bell,
E. Dumais,
J. Drenkow,
J. Gelpí,
Modesto Orozco,
A. Valencia,
M. Vidal,
P. Batut,
A. Dobin,
J. Harrow,
T. Hubbard,
J. Dekker,
A. Frankish,
K. Salehi-Ashtiani,
A. Reymond,
R. Guigó,
Thomas R Gingeras Comments,
Vincent a,
Lacroix,
Christelle b,
Borel,
Cé Dric Howald,
David Martin,
L. Ghamsari,
Josep Lluís Gelpí,
J. Stamatoyannopoulos,
R. Guigó,
T. Preiss,
John Curtin
|
0 |
2014 |
0 🐜
|
🐜
|
Evidence for transcript networks composed of chimeric RNAs in human cells
82 auth.
S. Djebali,
Julien Lagarde,
S. Djebali,
Julien Lagarde,
P. Kapranov,
Vincent Lacroix,
C. Borel,
Jonathan M. Mudge,
C. Howald,
S. Foissac,
C. Ucla,
Jacqueline Chrast,
Paolo Ribeca,
David Marin,
Ryan R. Murray,
...
Xinping Yang,
Lila Ghamasari,
Chenwei Lin,
I. Bell,
E. Dumais,
J. Drenkow,
M. Tress,
J. Gelpí,
Lluis,
Modesto Orozco,
A. Valencia,
Nynke L. van Berkum,
B. Lajoie,
M. Vidal,
J. Stamatoyannopoulos,
P. Batut,
A. Dobin,
J. Harrow,
T. Hubbard,
Job Dekker,
A. Frankish,
K. Salehi-Ashtiani,
A. Reymond,
S. Antonarakis,
R. Guigó,
T. Gingeras,
P. Kapranov,
Vincent Lacroix,
C. Borel,
C. Howald,
S. Foissac,
C. Ucla,
Jacqueline Chrast,
Paolo Ribeca,
David Marin,
Xinping Yang,
Lila Ghamasari,
Chenwei Lin,
I. Bell,
E. Dumais,
J. Drenkow,
J. Gelpí,
Modesto Orozco,
A. Valencia,
M. Vidal,
P. Batut,
A. Dobin,
J. Harrow,
T. Hubbard,
Job Dekker,
A. Frankish,
K. Salehi-Ashtiani,
A. Reymond,
R. Guigó,
Thomas R Gingeras Comments,
Vincent a,
Lacroix,
Christelle b,
Borel,
Cé Dric Howald,
David Martin,
L. Ghamsari,
Josep Lluís Gelpí,
J. Stamatoyannopoulos,
R. Guigó,
Thomas Preiss,
John Curtin
|
0 |
2017 |
0 🐜
|