BetterScholar BetterScholar
11
Role
Title
Level Year L/R
๐Ÿœ A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
314 auth. R. Myers, J. Stamatoyannopoulos, M. Snyder, I. Dunham, R. Hardison, B. Bernstein, T. Gingeras, W. Kent, E. Birney, B. Wold, G. Crawford, C. Epstein, N. Shoresh, J. Ernst, T. Mikkelsen, ... Pouya Kheradpour, Xiaolan Zhang, Li Wang, Robbyn Issner, Michael J. Coyne, Timothy J. Durham, Manching Ku, Thanh Truong, L. D. Ward, Robert C. Altshuler, Michael F. Lin, Manolis Kellis, Carrie A. Davis, P. Kapranov, A. Dobin, C. Zaleski, F. Schlesinger, P. Batut, S. Chakrabortty, Sonali Jha, Wei Lin, J. Drenkow, Huaien Wang, K. Bell, I. Bell, Hui Gao, E. Dumais, Jacqueline Dumais, S. Antonarakis, C. Ucla, C. Borel, R. Guigรณ, S. Djebali, Julien Lagarde, C. Kingswood, Paolo Ribeca, M. Sammeth, T. Alioto, A. Merkel, Hagen U. Tilgner, Piero Carninci, Y. Hayashizaki, T. Lassmann, Hazuki Takahashi, Rehab F Abdelhamid, G. Hannon, Katalin Fejes, Jonathan Preall, Assaf Gordon, V. Sotirova, A. Reymond, C. Howald, Emilie Aรฏt Yahya Graison, Jacqueline Chrast, Y. Ruan, Xiaoan Ruan, Atif Shahab, W. Poh, Chia-Lin Wei, T. Furey, A. Boyle, Nathan C. Sheffield, Lingyun Song, Yoichiro Shibata, T. Vales, D. Winter, Zhancheng Zhang, D. London, Tian-yuan Wang, Damian Keefe, V. Iyer, Bum-Kyu Lee, Ryan McDaniell, Zheng Liu, Anna M. Battenhouse, A. Bhinge, J. Lieb, L. Grasfeder, Kimberly A. Showers, P. Giresi, Seul K.C. Kim, Christopher Shestak, Florencia Pauli, Timothy E. Reddy, Jason Gertz, E. Partridge, Preti Jain, Rebekka O. Sprouse, A. Bansal, Barbara N. Pusey, M. Muratet, K. Varley, K. Bowling, Kimberly M. Newberry, Amy S. Nesmith, Jason A. Dilocker, S. Parker, L. Waite, Krista S. Thibeault, Kevin Roberts, D. Absher, A. Mortazavi, B. Williams, G. Marinov, Diane Trout, Brandon King, Kenneth McCue, Anthony Kirilusha, Gilberto Desalvo, Katherine Fisher, Henry Amrhein, S. Pepke, J. Vielmetter, G. Sherlock, A. Sidow, S. Batzoglou, Rami Rauch, A. Kundaje, Maxwell W. Libbrecht, E. Margulies, Stephen C. J. Parker, L. Elnitski, E. Green, T. Hubbard, J. Harrow, S. Searle, F. Kokocinski, B. Aken, A. Frankish, T. Hunt, Gloria Despacio-Reyes, M. Kay, Gaurab Mukherjee, A. Bignell, Gary Saunders, Veronika Boychenko, M. Brent, M. Baren, Randall H. Brown, M. Gerstein, Ekta Khurana, S. Balasubramanian, Hugo Y. K. Lam, Philip Cayting, R. Robilotto, Z. Lu, T. Derrien, Andrea Tanzer, David G. Knowles, M. Mariotti, D. Haussler, R. Harte, M. Diekhans, A. Valencia, M. Tress, S. Landt, D. Raha, Minyi Shi, G. Euskirchen, Fabian Grubert, Maya Kasowski, Jin Lian, P. Lacroute, Youhan Xu, Hannah Monahan, Dorrelyn Patacsil, T. Slifer, Xinqiong Yang, Alexandra E. Charos, Brian D. Reed, Linfeng Wu, Raymond K. Auerbach, L. Habegger, M. Hariharan, J. Rozowsky, A. Abyzov, S. Weissman, K. Struhl, Nathan Lamarre-Vincent, Marianne Lindahl-Allen, B. Miotto, Z. Moqtaderi, J. D. Fleming, P. Newburger, P. Farnham, S. Frietze, H. Oโ€™Geen, Xiaoqin Xu, Kimberly R. Blahnik, Alina R. Cao, Sushma Iyengar, R. Kaul, R. Thurman, Hao Wang, P. Navas, R. Sandstrom, P. Sabo, M. Weaver, T. Canfield, Kristen Lee, Shane J. Neph, Vaughan Roach, Alex P. Reynolds, Audra K. Johnson, Eric Rynes, Erika Giste, Shinny Vong, Jun Neri, Tristan Frum, Eric D Nguyen, Abigail K. Ebersol, Minerva E. Sanchez, Hadar H. Sheffer, D. Lotakis, E. Haugen, R. Humbert, T. Kutyavin, Tony Shafer, William Stafford Noble, J. Dekker, B. Lajoie, Amartya Sanyal, K. Rosenbloom, T. Dreszer, B. Raney, G. Barber, L. Meyer, C. A. Sloan, V. Malladi, M. Cline, K. Learned, Vanessa Swing, A. Zweig, B. Rhead, P. Fujita, K. Roskin, D. Karolchik, R. Kuhn, S. Wilder, D. Sobral, Javier Herrero, Kathryn M Beal, M. Lukk, A. Brazma, Juan M. Vaquerizas, N. Luscombe, P. Bickel, Nathan Boley, James B. Brown, Qunhua Li, Haiyan Huang, A. Sboner, Kevin Y. Yip, Chao Cheng, Koon-Kiu Yan, N. Bhardwaj, Jing Wang, L. Lochovsky, J. Jee, Theodore Gibson, Jing Leng, Jiang Du, Robert S. Harris, Giltae Song, W. Miller, Bernard B. Suh, B. Paten, M. M. Hoffman, Orion J. Buske, Z. Weng, Xianjun Dong, Jie Wang, H. Xi, S. Tenenbaum, F. Doyle, S. Chittur, L. O. Penalva, T. Tullius, K. White, S. Karmakar, Alec Victorsen, Nader Jameel, N. Bild, R. Grossman, P. Collins, N. Trinklein, Morgan C. Giddings, Jainab Khatun, Christopher W. Maier, Ting Wang, T. Whitfield, Xian Chen, Yanbao Yu, H. Gunawardena, E. Feingold, R. Lowdon, Laura A. L. Dillon, P. Good, B. Risk
10 2011
10
๐Ÿœ
๐Ÿฆ Computation for ChIP-seq and RNA-seq studies
S. Pepke, B. Wold, A. Mortazavi
9 2009
9
๐Ÿฆ
๐Ÿœ Single-cell transcriptome analysis reveals dynamic changes in lncRNA expression during reprogramming.
9 auth. Daniel H. Kim, G. Marinov, S. Pepke, Zakary S. Singer, Peng He, B. Williams, ... G. Schroth, M. Elowitz, B. Wold
7 2015
7
๐Ÿœ
๐Ÿฆ A Dynamic Model of Interactions of Ca2+, Calmodulin, and Catalytic Subunits of Ca2+/Calmodulin-Dependent Protein Kinase II
S. Pepke, Tamara L. Kinzer-Ursem, Stefan Mihalas, M. Kennedy
6 2010
6
๐Ÿฆ
๐Ÿœ High resolution mapping of Twist to DNA in Drosophila embryos: Efficient functional analysis and evolutionary conservation.
10 auth. A. Ozdemir, Katherine I. Fisher-Aylor, S. Pepke, M. Samanta, Leslie Dunipace, Kenneth McCue, ... Lucy Zeng, N. Ogawa, B. Wold, A. Stathopoulos
5 2011
5
๐Ÿœ
๐Ÿœ Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps
9 auth. A. Mortazavi, S. Pepke, Camden Jansen, G. Marinov, J. Ernst, Manolis Kellis, ... R. Hardison, R. Myers, B. Wold
5 2013
5
๐Ÿœ
๐Ÿฆ Comprehensive discovery of subsample gene expression components by information explanation: therapeutic implications in cancer
S. Pepke, Greg Ver Steeg
4 2016
4
๐Ÿฆ
๐Ÿœ A Portfolio Approach to Accelerate Therapeutic Innovation in Ovarian Cancer
7 auth. Shomesh E. Chaudhuri, Katherine A. Cheng, A. Lo, S. Pepke, Sergio Rinaudo, L. Roman, ... R. Spencer
2 2018
2
๐Ÿœ
๐Ÿœ Efficient functional analysis and evolutionary conservation embryos : Drosophila High resolution mapping of Twist to DNA in Material Supplemental
10 auth. A. Ozdemir, Katherine I. Fisher-Aylor, S. Pepke, M. Samanta, Leslie Dunipace, Kenneth McCue, ... Lucy Zeng, N. Ogawa, B. Wold, A. Stathopoulos
1 2011
1
๐Ÿœ
๐Ÿฌ Multi-Stage Modeling of the Kinetics of Activation of CaMKII
Melanie I. Stefan, S. Pepke, Stefan Mihalas, T. Bartol, T. Sejnowski, M. Kennedy
0 2011
0
๐Ÿฌ
๐Ÿœ specificity using self-organizing maps Integrating and mining the chromatin landscape of cell-type Material Supplemental
9 auth. A. Mortazavi, S. Pepke, Camden Jansen, G. Marinov, J. Ernst, Manolis Kellis, ... R. Hardison, R. Myers, B. Wold
0 2013
0
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