BetterScholar BetterScholar
13
Role
Title
Level Year L/R
๐Ÿœ Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
310 auth. E. Birney, J. Stamatoyannopoulos, A. Dutta, R. Guigรณ, T. Gingeras, E. Margulies, Z. Weng, M. Snyder, E. Dermitzakis, R. Thurman, Michael S. Kuehn, Christopher M. Taylor, Shane J. Neph, Christoph M. Koch, S. Asthana, ... A. Malhotra, I. Adzhubei, J. Greenbaum, R. Andrews, Paul Flicek, Patrick J Boyle, Hua Cao, N. Carter, Gayle K. Clelland, S. Davis, Nathan Day, P. Dhami, Shane C. Dillon, M. Dorschner, H. Fiegler, P. Giresi, J. Goldy, M. Hawrylycz, Andrew K. Haydock, R. Humbert, K. James, Brett E. Johnson, Ericka M. Johnson, Tristan Frum, Elizabeth R. Rosenzweig, N. Karnani, K. Lee, Gregory Lefebvre, P. Navas, Fidencio V. Neri, Stephen C. J. Parker, P. Sabo, R. Sandstrom, A. Shafer, D. Vetrie, M. Weaver, S. Wilcox, Man Yu, F. Collins, J. Dekker, J. Lieb, T. Tullius, G. Crawford, S. Sunyaev, W. S. Noble, I. Dunham, F. Denoeud, A. Reymond, P. Kapranov, J. Rozowsky, D. Zheng, R. Castelo, A. Frankish, J. Harrow, Srinka Ghosh, A. Sandelin, I. Hofacker, R. Baertsch, Damian Keefe, S. Dike, Jill Cheng, H. Hirsch, E. Sekinger, Julien Lagarde, J. F. Abril, Atif Shahab, Christoph Flamm, C. Fried, J. Hackermรผller, Jana Hertel, Manja Lindemeyer, Kristin Missal, Andrea Tanzer, Stefan Washietl, J. Korbel, O. Emanuelsson, J. S. Pedersen, N. Holroyd, Ruth Taylor, D. Swarbreck, N. Matthews, M. Dickson, D. Thomas, M. Weirauch, J. Gilbert, J. Drenkow, I. Bell, X. Zhao, K. Srinivasan, W. Sung, H. Ooi, K. Chiu, S. Foissac, T. Alioto, M. Brent, L. Pachter, M. Tress, A. Valencia, S. Choo, C. Choo, C. Ucla, C. Manzano, Carine Wyss, E. Cheung, T. Clark, James B. Brown, M. Ganesh, Sandeep Patel, H. Tammana, Jacqueline Chrast, Charlotte N. Henrichsen, C. Kai, J. Kawai, Ugrappa Nagalakshmi, Jiaqian Wu, Zheng Lian, Jin Lian, P. Newburger, Xueqing Zhang, P. Bickel, J. Mattick, Piero Carninci, Y. Hayashizaki, S. Weissman, T. Hubbard, R. M. Myers, J. Rogers, P. Stadler, T. Lowe, Chia-Lin Wei, Y. Ruan, K. Struhl, M. Gerstein, S. Antonarakis, Yutao Fu, E. Green, Ulas Karaรถz, A. Siepel, James Taylor, L. Liefer, K. Wetterstrand, P. Good, E. Feingold, M. Guyer, G. Cooper, G. Asimenos, Colin N. Dewey, Minmei Hou, S. Nikolaev, J. Montoya-Burgos, A. Lรถytynoja, S. Whelan, F. Pardi, Tim Massingham, Haiyan Huang, Na Zhang, I. Holmes, J. Mullikin, A. Ureta-Vidal, B. Paten, Michael R. Seringhaus, D. Church, K. Rosenbloom, W. Kent, Eric A. Stone, S. Batzoglou, N. Goldman, R. Hardison, D. Haussler, Webb Miller, A. Sidow, N. Trinklein, Zhengdong D. Zhang, Leah Barrera, R. Stuart, D. King, A. Ameur, Stefan Enroth, M. Bieda, Jonghwan Kim, A. Bhinge, N. Jiang, Jun Liu, Fei Yao, V. Vega, C. Lee, A. Yang, Z. Moqtaderi, Zhou Zhu, Xiaoqin Xu, S. Squazzo, M. Oberley, David Inman, Michael A. Singer, T. Richmond, Kyle J. Munn, ร. Rada-Iglesias, O. Wallerman, J. Komorowski, J. Fowler, Phillippe Couttet, Alexander W. Bruce, O. Dovey, P. Ellis, C. Langford, D. Nix, G. Euskirchen, S. Hartman, A. Urban, P. Kraus, Sara Van Calcar, Nathaniel D. Heintzman, Tae Hoon Kim, Kun Wang, Chunxu Qu, G. Hon, R. Luna, C. Glass, M. Rosenfeld, S. F. Aldred, S. Cooper, Anason S. Halees, J. M. Lin, H. Shulha, Xiaoling Zhang, Mousheng Xu, Jaafar N. Haidar, Yon-Jong Yu, V. Iyer, Roland Green, C. Wadelius, P. Farnham, B. Ren, R. Harte, A. Hinrichs, Heather Trumbower, H. Clawson, Jennifer Hillman-Jackson, A. Zweig, Kayla E. Smith, Archana Thakkapallayil, G. Barber, R. Kuhn, D. Karolchik, L. Armengol, C. Bird, P. D. de Bakker, Andrew D. Kern, N. Lรณpez-Bigas, Joel D Martin, B. Stranger, A. Woodroffe, Eugene Davydov, A. Dimas, E. Eyras, Ingileif B. Hallgrรญmsdรณttir, J. Huppert, M. Zody, G. Abecasis, X. Estivill, G. Bouffard, Xiaobin Guan, Nancy F. Hansen, J. Idol, V. Maduro, Baishali Maskeri, Jennifer C Mcdowell, Morgan Park, Pamela J. Thomas, Alice C. Young, R. Blakesley, D. Muzny, E. Sodergren, D. Wheeler, K. Worley, Huaiyang Jiang, G. Weinstock, R. Gibbs, T. Graves, R. Fulton, E. Mardis, R. Wilson, M. Clamp, James A. Cuff, S. Gnerre, D. Jaffe, Jean L. Chang, K. Lindblad-Toh, E. Lander, M. Koriabine, M. Nefedov, K. Osoegawa, Y. Yoshinaga, B. Zhu, P. D. de Jong
12 2007
12
๐Ÿœ
๐Ÿœ The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
27 auth. T. Derrien, Rory Johnson, G. Bussotti, Andrea Tanzer, S. Djebali, Hagen U. Tilgner, G. Guernec, David Martin, A. Merkel, David G. Knowles, Julien Lagarde, Lavanya Veeravalli, Xiaoan Ruan, Y. Ruan, T. Lassmann, ... Piero Carninci, James B. Brown, L. Lipovich, J. Gonzalez, Mark Thomas, Carrie A. Davis, R. Shiekhattar, T. Gingeras, T. Hubbard, Cรฉdric Notredame, J. Harrow, R. Guigรณ
12 2012
12
๐Ÿœ
๐Ÿฌ Measuring reproducibility of high-throughput experiments
Qunhua Li, James B. Brown, Haiyan Huang, P. Bickel
9 2011
9
๐Ÿฌ
๐Ÿœ The Developmental Transcriptome of Drosophila melanogaster
47 auth. B. Graveley, Angela N. Brooks, J. Carlson, M. Duff, J. Landolin, Li Yang, C. Artieri, M. V. van Baren, Nathan Boley, Benjamin W. Booth, James B. Brown, L. Cherbas, Carrie A. Davis, A. Dobin, Renhua Li, ... Wei Lin, J. Malone, Nicolas R. Mattiuzzo, David Miller, David Sturgill, Brian B. Tuch, C. Zaleski, Dayu Zhang, M. Blanchette, S. Dudoit, B. Eads, R. Green, A. Hammonds, Lichun Jiang, P. Kapranov, Laura Langton, N. Perrimon, Jeremy E. Sandler, K. Wan, A. Willingham, Yu Zhang, Yi Zou, J. Andrews, P. Bickel, S. Brenner, M. Brent, P. Cherbas, T. Gingeras, R. Hoskins, T. Kaufman, B. Oliver, S. Celniker
9 2010
9
๐Ÿœ
๐Ÿฆ Diversity and dynamics of the Drosophila transcriptome
41 auth. James B. Brown, Nathan Boley, R. Eisman, Gemma E. May, Marcus H. Stoiber, M. Duff, Benjamin W. Booth, Jiayu Wen, Soo Park, A. Suzuki, K. Wan, Charles Yu, Dayu Zhang, J. Carlson, L. Cherbas, ... B. Eads, David Miller, K. Mockaitis, Johnny Roberts, Carrie A. Davis, E. Frise, A. Hammonds, S. Olson, S. Shenker, David Sturgill, A. Samsonova, Richard Weiszmann, G. Robinson, Juan Hernandez, J. Andrews, P. Bickel, Piero Carninci, P. Cherbas, T. Gingeras, R. Hoskins, T. Kaufman, E. Lai, B. Oliver, N. Perrimon, B. Graveley, S. Celniker
9 2014
9
๐Ÿฆ
๐Ÿœ Long noncoding RNAs are rarely translated in two human cell lines
17 auth. B. Bรกnfai, Hui Jia, Jainab Khatun, E. Wood, B. Risk, William Gundling, A. Kundaje, H. Gunawardena, Yanbao Yu, Ling Xie, ... K. Krajewski, B. Strahl, Xian Chen, P. Bickel, Morgan C. Giddings, James B. Brown, L. Lipovich
8 2012
8
๐Ÿœ
๐Ÿœ Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions
15 auth. S. MacArthur, Xiaoyong Li, Jingyi Li, James B. Brown, H. C. Chu, Lucy Zeng, Brandi P Grondona, A. Hechmer, L. Simirenko, S. Kerรคnen, ... D. W. Knowles, M. Stapleton, P. Bickel, M. Biggin, M. Eisen
8 2009
8
๐Ÿœ
๐Ÿฌ Iterative random forests to discover predictive and stable high-order interactions
Sumanta Basu, Karl Kumbier, James B. Brown, Bin Yu
8 2017
8
๐Ÿฌ
๐Ÿœ Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors
11 auth. Kevin Y. Yip, Chao Cheng, N. Bhardwaj, James B. Brown, Jing Leng, A. Kundaje, ... J. Rozowsky, E. Birney, Peter J. Bickel, M. Snyder, M. Gerstein
8 2012
8
๐Ÿœ
๐Ÿœ Modeling gene expression using chromatin features in various cellular contexts
11 auth. Xianjun Dong, Melissa C. Greven, A. Kundaje, S. Djebali, James B. Brown, Chao Cheng, ... T. Gingeras, M. Gerstein, R. Guigรณ, E. Birney, Z. Weng
8 2012
8
๐Ÿœ
๐Ÿœ Genome-wide analysis of promoter architecture in Drosophila melanogaster.
19 auth. R. Hoskins, J. Landolin, James B. Brown, Jeremy E. Sandler, Hazuki Takahashi, T. Lassmann, Charles Yu, Benjamin W. Booth, Dayu Zhang, K. Wan, ... Li Yang, Nathan Boley, J. Andrews, T. Kaufman, B. Graveley, P. Bickel, Piero Carninci, J. Carlson, S. Celniker
7 2011
7
๐Ÿœ
๐Ÿœ Global patterns of tissue-specific alternative polyadenylation in Drosophila.
17 auth. Peter Smibert, P. Miura, J. Westholm, S. Shenker, Gemma E. May, M. Duff, Dayu Zhang, B. Eads, J. Carlson, James B. Brown, ... R. Eisman, J. Andrews, T. Kaufman, P. Cherbas, S. Celniker, B. Graveley, E. Lai
7 2012
7
๐Ÿœ
๐Ÿœ Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome.
77 auth. E. Margulies, G. Cooper, G. Asimenos, D. Thomas, Colin N. Dewey, A. Siepel, E. Birney, Damian Keefe, Ariel S. Schwartz, Minmei Hou, James Taylor, S. Nikolaev, J. Montoya-Burgos, A. Lรถytynoja, S. Whelan, ... F. Pardi, Tim Massingham, James B. Brown, P. Bickel, I. Holmes, J. Mullikin, A. Ureta-Vidal, B. Paten, Eric A. Stone, K. Rosenbloom, W. Kent, G. Bouffard, Xiaobin Guan, Nancy F. Hansen, J. Idol, V. Maduro, Baishali Maskeri, Jennifer C Mcdowell, Morgan Park, Pamela J. Thomas, Alice C. Young, R. Blakesley, D. Muzny, E. Sodergren, D. Wheeler, K. Worley, Huaiyang Jiang, G. Weinstock, R. Gibbs, T. Graves, R. Fulton, E. Mardis, R. Wilson, M. Clamp, James A. Cuff, S. Gnerre, D. Jaffe, Jean L. Chang, K. Lindblad-Toh, E. Lander, A. Hinrichs, Heather Trumbower, H. Clawson, A. Zweig, R. Kuhn, G. Barber, R. Harte, D. Karolchik, M. Field, Richard A. Moore, Carrie A. Matthewson, J. Schein, M. Marra, S. Antonarakis, S. Batzoglou, N. Goldman, R. Hardison, D. Haussler, W. Miller, L. Pachter, E. Green, A. Sidow
7 2007
7
๐Ÿœ