π
|
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
310 auth.
E. Birney,
J. Stamatoyannopoulos,
A. Dutta,
R. GuigΓ³,
T. Gingeras,
E. Margulies,
Z. Weng,
M. Snyder,
E. Dermitzakis,
R. Thurman,
Michael S. Kuehn,
Christopher M. Taylor,
Shane J. Neph,
Christoph M. Koch,
S. Asthana,
...
A. Malhotra,
I. Adzhubei,
J. Greenbaum,
R. Andrews,
Paul Flicek,
Patrick J Boyle,
Hua Cao,
N. Carter,
Gayle K. Clelland,
S. Davis,
Nathan Day,
P. Dhami,
Shane C. Dillon,
M. Dorschner,
H. Fiegler,
P. Giresi,
J. Goldy,
M. Hawrylycz,
Andrew K. Haydock,
R. Humbert,
K. James,
Brett E. Johnson,
Ericka M. Johnson,
Tristan Frum,
Elizabeth R. Rosenzweig,
N. Karnani,
K. Lee,
Gregory Lefebvre,
P. Navas,
Fidencio V. Neri,
Stephen C. J. Parker,
P. Sabo,
R. Sandstrom,
A. Shafer,
D. Vetrie,
M. Weaver,
S. Wilcox,
Man Yu,
F. Collins,
J. Dekker,
J. Lieb,
T. Tullius,
G. Crawford,
S. Sunyaev,
W. S. Noble,
I. Dunham,
F. Denoeud,
A. Reymond,
P. Kapranov,
J. Rozowsky,
D. Zheng,
R. Castelo,
A. Frankish,
J. Harrow,
Srinka Ghosh,
A. Sandelin,
I. Hofacker,
R. Baertsch,
Damian Keefe,
S. Dike,
Jill Cheng,
H. Hirsch,
E. Sekinger,
Julien Lagarde,
J. F. Abril,
Atif Shahab,
Christoph Flamm,
C. Fried,
J. HackermΓΌller,
Jana Hertel,
Manja Lindemeyer,
Kristin Missal,
Andrea Tanzer,
Stefan Washietl,
J. Korbel,
O. Emanuelsson,
J. S. Pedersen,
N. Holroyd,
Ruth Taylor,
D. Swarbreck,
N. Matthews,
M. Dickson,
D. Thomas,
M. Weirauch,
J. Gilbert,
J. Drenkow,
I. Bell,
X. Zhao,
K. Srinivasan,
W. Sung,
H. Ooi,
K. Chiu,
S. Foissac,
T. Alioto,
M. Brent,
L. Pachter,
M. Tress,
A. Valencia,
S. Choo,
C. Choo,
C. Ucla,
C. Manzano,
Carine Wyss,
E. Cheung,
T. Clark,
James B. Brown,
M. Ganesh,
Sandeep Patel,
H. Tammana,
Jacqueline Chrast,
Charlotte N. Henrichsen,
C. Kai,
J. Kawai,
Ugrappa Nagalakshmi,
Jiaqian Wu,
Zheng Lian,
Jin Lian,
P. Newburger,
Xueqing Zhang,
P. Bickel,
J. Mattick,
Piero Carninci,
Y. Hayashizaki,
S. Weissman,
T. Hubbard,
R. M. Myers,
J. Rogers,
P. Stadler,
T. Lowe,
Chia-Lin Wei,
Y. Ruan,
K. Struhl,
M. Gerstein,
S. Antonarakis,
Yutao Fu,
E. Green,
Ulas KaraΓΆz,
A. Siepel,
James Taylor,
L. Liefer,
K. Wetterstrand,
P. Good,
E. Feingold,
M. Guyer,
G. Cooper,
G. Asimenos,
Colin N. Dewey,
Minmei Hou,
S. Nikolaev,
J. Montoya-Burgos,
A. LΓΆytynoja,
S. Whelan,
F. Pardi,
Tim Massingham,
Haiyan Huang,
Na Zhang,
I. Holmes,
J. Mullikin,
A. Ureta-Vidal,
B. Paten,
Michael R. Seringhaus,
D. Church,
K. Rosenbloom,
W. Kent,
Eric A. Stone,
S. Batzoglou,
N. Goldman,
R. Hardison,
D. Haussler,
Webb Miller,
A. Sidow,
N. Trinklein,
Zhengdong D. Zhang,
Leah Barrera,
R. Stuart,
D. King,
A. Ameur,
Stefan Enroth,
M. Bieda,
Jonghwan Kim,
A. Bhinge,
N. Jiang,
Jun Liu,
Fei Yao,
V. Vega,
C. Lee,
A. Yang,
Z. Moqtaderi,
Zhou Zhu,
Xiaoqin Xu,
S. Squazzo,
M. Oberley,
David Inman,
Michael A. Singer,
T. Richmond,
Kyle J. Munn,
Γ. Rada-Iglesias,
O. Wallerman,
J. Komorowski,
J. Fowler,
Phillippe Couttet,
Alexander W. Bruce,
O. Dovey,
P. Ellis,
C. Langford,
D. Nix,
G. Euskirchen,
S. Hartman,
A. Urban,
P. Kraus,
Sara Van Calcar,
Nathaniel D. Heintzman,
Tae Hoon Kim,
Kun Wang,
Chunxu Qu,
G. Hon,
R. Luna,
C. Glass,
M. Rosenfeld,
S. F. Aldred,
S. Cooper,
Anason S. Halees,
J. M. Lin,
H. Shulha,
Xiaoling Zhang,
Mousheng Xu,
Jaafar N. Haidar,
Yon-Jong Yu,
V. Iyer,
Roland Green,
C. Wadelius,
P. Farnham,
B. Ren,
R. Harte,
A. Hinrichs,
Heather Trumbower,
H. Clawson,
Jennifer Hillman-Jackson,
A. Zweig,
Kayla E. Smith,
Archana Thakkapallayil,
G. Barber,
R. Kuhn,
D. Karolchik,
L. Armengol,
C. Bird,
P. D. de Bakker,
Andrew D. Kern,
N. LΓ³pez-Bigas,
Joel D Martin,
B. Stranger,
A. Woodroffe,
Eugene Davydov,
A. Dimas,
E. Eyras,
Ingileif B. HallgrΓmsdΓ³ttir,
J. Huppert,
M. Zody,
G. Abecasis,
X. Estivill,
G. Bouffard,
Xiaobin Guan,
Nancy F. Hansen,
J. Idol,
V. Maduro,
Baishali Maskeri,
Jennifer C Mcdowell,
Morgan Park,
Pamela J. Thomas,
Alice C. Young,
R. Blakesley,
D. Muzny,
E. Sodergren,
D. Wheeler,
K. Worley,
Huaiyang Jiang,
G. Weinstock,
R. Gibbs,
T. Graves,
R. Fulton,
E. Mardis,
R. Wilson,
M. Clamp,
James A. Cuff,
S. Gnerre,
D. Jaffe,
Jean L. Chang,
K. Lindblad-Toh,
E. Lander,
M. Koriabine,
M. Nefedov,
K. Osoegawa,
Y. Yoshinaga,
B. Zhu,
P. D. de Jong
|
12 |
2007 |
12 π
|
π
|
The ENCODE (ENCyclopedia Of DNA Elements) Project
197 auth.
E. Feingold,
P. Good,
M. Guyer,
S. Kamholz,
L. Liefer,
K. Wetterstrand,
F. Collins,
T. Gingeras,
D. Kampa,
E. Sekinger,
Jill Cheng,
H. Hirsch,
Srinka Ghosh,
Z. Zhu,
Sandeep Patel,
...
A. Piccolboni,
A. Yang,
H. Tammana,
S. Bekiranov,
P. Kapranov,
R. Harrison,
G. Church,
K. Struhl,
B. Ren,
Tae Hoon Kim,
Leah Barrera,
Chunxu Qu,
S. V. Calcar,
R. Luna,
C. Glass,
M. Rosenfeld,
R. GuigΓ³,
S. Antonarakis,
E. Birney,
M. Brent,
L. Pachter,
A. Reymond,
E. Dermitzakis,
Colin N. Dewey,
Damian Keefe,
F. Denoeud,
Julien Lagarde,
J. Ashurst,
T. Hubbard,
J. Wesselink,
R. Castelo,
E. Eyras,
R. Myers,
A. Sidow,
S. Batzoglou,
N. Trinklein,
S. Hartman,
S. F. Aldred,
Elizabeth Anton,
D. I. Schroeder,
S. Marticke,
Leann Nguyen,
J. Schmutz,
J. Grimwood,
M. Dickson,
G. Cooper,
Eric A. Stone,
G. Asimenos,
M. Brudno,
Anindya Dutta,
N. Karnani,
Christopher M. Taylor,
H. K. Kim,
G. Robins,
G. Stamatoyannopoulos,
J. Stamatoyannopoulos,
M. Dorschner,
P. Sabo,
M. Hawrylycz,
R. Humbert,
J. Wallace,
Min Yu,
P. Navas,
M. McArthur,
William Stafford Noble,
I. Dunham,
Christof Koch,
R. Andrews,
Gayle K. Clelland,
S. Wilcox,
J. Fowler,
K. James,
Paul T. Groth,
O. Dovey,
P. Ellis,
Vicki L. Wraight,
A. Mungall,
P. Dhami,
H. Fiegler,
C. Langford,
N. Carter,
D. Vetrie,
M. Snyder,
G. Euskirchen,
A. Urban,
Ugrappa Nagalakshmi,
J. Rinn,
George V. Popescu,
Paul Bertone,
S. Hartman,
J. Rozowsky,
O. Emanuelsson,
Thomas E. Royce,
Sambath Chung,
M. Gerstein,
Zheng Lian,
Jin Lian,
Y. Nakayama,
S. Weissman,
V. Ε tolc,
W. Tongprasit,
H. Sethi,
Steven J. M. Jones,
M. Marra,
H. Shin,
J. Schein,
M. Clamp,
K. Lindblad-Toh,
Jean L. Chang,
D. Jaffe,
Michael Kamal,
E. Lander,
T. Mikkelsen,
J. Vinson,
M. Zody,
P. Jong,
K. Osoegawa,
M. Nefedov,
B. Zhu,
A. D. Baxevanis,
T. Wolfsberg,
G. Crawford,
J. Whittle,
I. Holt,
T. Vasicek,
D. Zhou,
S. Luo,
E. Green,
G. Bouffard,
E. Margulies,
M. Portnoy,
Nancy F. Hansen,
Pamela J. Thomas,
Jennifer C Mcdowell,
Baishali Maskeri,
Alice C. Young,
J. Idol,
R. Blakesley,
G. Schuler,
W. Miller,
R. Hardison,
L. Elnitski,
P. Shah,
S. Salzberg,
M. PerΘea,
William H. Majoros,
D. Haussler,
D. Thomas,
K. Rosenbloom,
H. Clawson,
A. Siepel,
W. Kent,
Z. Weng,
S. Jin,
Anason S. Halees,
H. Burden,
U. Karaoz,
Yutao Fu,
Yong Yu,
Chunming Ding,
C. Cantor,
R. Kingston,
J. Dennis,
Roland Green,
Michael A. Singer,
T. Richmond,
J. Norton,
P. Farnham,
M. Oberley,
D. Inman,
M. McCormick,
H. Kim,
C. Middle,
M. Pirrung,
Xiang-Dong Fu,
Y. S. Kwon,
Z. Ye,
J. Dekker,
T. Tabuchi,
N. Gheldof,
J. Dostie,
S. Harvey
|
11 |
2004 |
11 π
|
π
|
Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements.
12 auth.
J. Dostie,
T. Richmond,
R. Arnaout,
R. Selzer,
William L Lee,
T. Honan,
...
Eric D. Rubio,
A. Krumm,
J. Lamb,
C. Nusbaum,
Roland Green,
J. Dekker
|
10 |
2006 |
10 π
|
π
|
A high-resolution map of active promoters in the human genome
9 auth.
Tae Hoon Kim,
Leah Barrera,
Ming Zheng,
Chunxu Qu,
Michael A. Singer,
T. Richmond,
...
Ying N Wu,
Roland Green,
B. Ren
|
9 |
2005 |
9 π
|
π
|
Direct selection of human genomic loci by microarray hybridization
12 auth.
T. Albert,
Michael Molla,
D. Muzny,
L. Nazareth,
D. Wheeler,
Xingzhi Song,
...
T. Richmond,
C. Middle,
M. Rodesch,
C. Packard,
G. Weinstock,
R. Gibbs
|
9 |
2007 |
9 π
|
π
|
Somatic retrotransposition alters the genetic landscape of the human brain
19 auth.
J. Baillie,
M. Barnett,
K. Upton,
D. J. Gerhardt,
T. Richmond,
Fioravante De Sapio,
Paul M. Brennan,
P. Rizzu,
Sarah Smith,
M. Fell,
...
R. Talbot,
S. Gustincich,
T. Freeman,
J. Mattick,
D. Hume,
P. Heutink,
Piero Carninci,
J. Jeddeloh,
G. Faulkner
|
9 |
2011 |
9 π
|
π
|
Tracking Cancer Evolution Reveals Constrained Routes to Metastases: TRACERx Renal
49 auth.
S. Turajlic,
Hang Xu,
K. Litchfield,
A. Rowan,
T. Chambers,
J. LΓ³pez,
D. Nicol,
T. O'brien,
J. Larkin,
S. Horswell,
Mark Stares,
L. Au,
M. Jamal-Hanjani,
B. Challacombe,
A. Chandra,
...
S. Hazell,
Claudia Eichler-Jonsson,
A. Soultati,
S. Chowdhury,
S. Rudman,
Joanna Lynch,
A. Fernando,
G. Stamp,
E. Nye,
F. Jabbar,
L. Spain,
S. Lall,
R. Guarch,
M. Falzon,
I. Proctor,
L. Pickering,
M. Gore,
T. Watkins,
S. Ward,
A. Stewart,
R. DiNatale,
Maria F. Becerra,
E. Reznik,
J. Hsieh,
T. Richmond,
G. Mayhew,
S. Hill,
Catherine D. McNally,
Carol Jones,
Heidi Rosenbaum,
S. Stanislaw,
Daniel L Burgess,
Nelson R. Alexander,
C. Swanton
|
9 |
2018 |
9 π
|
π
|
Discovery of previously unidentified genomic disorders from the duplication architecture of the human genome
20 auth.
A. Sharp,
S. Hansen,
R. Selzer,
Ze Cheng,
R. Regan,
J. Hurst,
H. Stewart,
S. Price,
E. Blair,
R. Hennekam,
...
Carrie A. Fitzpatrick,
R. Segraves,
T. Richmond,
Cheryl Guiver,
D. Albertson,
D. Pinkel,
P. S. Eis,
S. Schwartz,
S. Knight,
E. Eichler
|
9 |
2006 |
9 π
|
π¦
|
The cellulose synthase superfamily.
T. Richmond,
C. Somerville
|
9 |
2000 |
9 π¦
|
π
|
Maize Inbreds Exhibit High Levels of Copy Number Variation (CNV) and Presence/Absence Variation (PAV) in Genome Content
15 auth.
Nathan M. Springer,
Kai Ying,
Yan Fu,
Tieming Ji,
C. Yeh,
Yi Jia,
Wei Wu,
T. Richmond,
J. Kitzman,
Heidi Rosenbaum,
...
A. L. Iniguez,
W. B. Barbazuk,
J. Jeddeloh,
D. Nettleton,
P. Schnable
|
9 |
2009 |
9 π
|
π
|
Comparative isoschizomer profiling of cytosine methylation: the HELP assay.
16 auth.
Batbayar Khulan,
Reid F. Thompson,
Kenny Q. Ye,
M. Fazzari,
Masako Suzuki,
Edyta Stasiek,
M. Figueroa,
Jacob L Glass,
Quan Chen,
C. Montagna,
...
E. Hatchwell,
R. Selzer,
T. Richmond,
Roland Green,
A. Melnick,
J. Greally
|
8 |
2006 |
8 π
|
π
|
Gene expression analysis using oligonucleotide arrays produced by maskless photolithography.
23 auth.
E. Nuwaysir,
Wei Huang,
T. Albert,
Jaz Singh,
Kate Nuwaysir,
A. Pitas,
T. Richmond,
T. Gorski,
J. P. Berg,
Jeff D. Ballin,
...
M. McCormick,
J. Norton,
Tim E Pollock,
Terry Sumwalt,
Lawrence L. Butcher,
DeAnn Porter,
Michael Molla,
Christine Hall,
F. Blattner,
M. Sussman,
Rodney Wallace,
F. Cerrina,
R. Green
|
8 |
2002 |
8 π
|
π
|
Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays
24 auth.
P. Sabo,
Michael S. Kuehn,
R. Thurman,
Brett E. Johnson,
Ericka M. Johnson,
H. Cao,
Man Yu,
Elizabeth R. Rosenzweig,
J. Goldy,
Andrew K. Haydock,
...
M. Weaver,
A. Shafer,
Kristen Lee,
Fidencio V. Neri,
R. Humbert,
Michael A. Singer,
T. Richmond,
M. Dorschner,
M. McArthur,
M. Hawrylycz,
Roland Green,
P. Navas,
William Stafford Noble,
J. Stamatoyannopoulos
|
8 |
2006 |
8 π
|