BetterScholar BetterScholar
13
Role
Title
Level Year L/R
🐜 Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
310 auth. E. Birney, J. Stamatoyannopoulos, A. Dutta, R. Guigó, T. Gingeras, E. Margulies, Z. Weng, M. Snyder, E. Dermitzakis, R. Thurman, Michael S. Kuehn, Christopher M. Taylor, Shane J. Neph, Christoph M. Koch, S. Asthana, ... A. Malhotra, I. Adzhubei, J. Greenbaum, R. Andrews, Paul Flicek, Patrick J Boyle, Hua Cao, N. Carter, Gayle K. Clelland, S. Davis, Nathan Day, P. Dhami, Shane C. Dillon, M. Dorschner, H. Fiegler, P. Giresi, J. Goldy, M. Hawrylycz, Andrew K. Haydock, R. Humbert, K. James, Brett E. Johnson, Ericka M. Johnson, Tristan Frum, Elizabeth R. Rosenzweig, N. Karnani, K. Lee, Gregory Lefebvre, P. Navas, Fidencio V. Neri, Stephen C. J. Parker, P. Sabo, R. Sandstrom, A. Shafer, D. Vetrie, M. Weaver, S. Wilcox, Man Yu, F. Collins, J. Dekker, J. Lieb, T. Tullius, G. Crawford, S. Sunyaev, W. S. Noble, I. Dunham, F. Denoeud, A. Reymond, P. Kapranov, J. Rozowsky, D. Zheng, R. Castelo, A. Frankish, J. Harrow, Srinka Ghosh, A. Sandelin, I. Hofacker, R. Baertsch, Damian Keefe, S. Dike, Jill Cheng, H. Hirsch, E. Sekinger, Julien Lagarde, J. F. Abril, Atif Shahab, Christoph Flamm, C. Fried, J. Hackermüller, Jana Hertel, Manja Lindemeyer, Kristin Missal, Andrea Tanzer, Stefan Washietl, J. Korbel, O. Emanuelsson, J. S. Pedersen, N. Holroyd, Ruth Taylor, D. Swarbreck, N. Matthews, M. Dickson, D. Thomas, M. Weirauch, J. Gilbert, J. Drenkow, I. Bell, X. Zhao, K. Srinivasan, W. Sung, H. Ooi, K. Chiu, S. Foissac, T. Alioto, M. Brent, L. Pachter, M. Tress, A. Valencia, S. Choo, C. Choo, C. Ucla, C. Manzano, Carine Wyss, E. Cheung, T. Clark, James B. Brown, M. Ganesh, Sandeep Patel, H. Tammana, Jacqueline Chrast, Charlotte N. Henrichsen, C. Kai, J. Kawai, Ugrappa Nagalakshmi, Jiaqian Wu, Zheng Lian, Jin Lian, P. Newburger, Xueqing Zhang, P. Bickel, J. Mattick, Piero Carninci, Y. Hayashizaki, S. Weissman, T. Hubbard, R. M. Myers, J. Rogers, P. Stadler, T. Lowe, Chia-Lin Wei, Y. Ruan, K. Struhl, M. Gerstein, S. Antonarakis, Yutao Fu, E. Green, Ulas Karaöz, A. Siepel, James Taylor, L. Liefer, K. Wetterstrand, P. Good, E. Feingold, M. Guyer, G. Cooper, G. Asimenos, Colin N. Dewey, Minmei Hou, S. Nikolaev, J. Montoya-Burgos, A. Löytynoja, S. Whelan, F. Pardi, Tim Massingham, Haiyan Huang, Na Zhang, I. Holmes, J. Mullikin, A. Ureta-Vidal, B. Paten, Michael R. Seringhaus, D. Church, K. Rosenbloom, W. Kent, Eric A. Stone, S. Batzoglou, N. Goldman, R. Hardison, D. Haussler, Webb Miller, A. Sidow, N. Trinklein, Zhengdong D. Zhang, Leah Barrera, R. Stuart, D. King, A. Ameur, Stefan Enroth, M. Bieda, Jonghwan Kim, A. Bhinge, N. Jiang, Jun Liu, Fei Yao, V. Vega, C. Lee, A. Yang, Z. Moqtaderi, Zhou Zhu, Xiaoqin Xu, S. Squazzo, M. Oberley, David Inman, Michael A. Singer, T. Richmond, Kyle J. Munn, Á. Rada-Iglesias, O. Wallerman, J. Komorowski, J. Fowler, Phillippe Couttet, Alexander W. Bruce, O. Dovey, P. Ellis, C. Langford, D. Nix, G. Euskirchen, S. Hartman, A. Urban, P. Kraus, Sara Van Calcar, Nathaniel D. Heintzman, Tae Hoon Kim, Kun Wang, Chunxu Qu, G. Hon, R. Luna, C. Glass, M. Rosenfeld, S. F. Aldred, S. Cooper, Anason S. Halees, J. M. Lin, H. Shulha, Xiaoling Zhang, Mousheng Xu, Jaafar N. Haidar, Yon-Jong Yu, V. Iyer, Roland Green, C. Wadelius, P. Farnham, B. Ren, R. Harte, A. Hinrichs, Heather Trumbower, H. Clawson, Jennifer Hillman-Jackson, A. Zweig, Kayla E. Smith, Archana Thakkapallayil, G. Barber, R. Kuhn, D. Karolchik, L. Armengol, C. Bird, P. D. de Bakker, Andrew D. Kern, N. López-Bigas, Joel D Martin, B. Stranger, A. Woodroffe, Eugene Davydov, A. Dimas, E. Eyras, Ingileif B. Hallgrímsdóttir, J. Huppert, M. Zody, G. Abecasis, X. Estivill, G. Bouffard, Xiaobin Guan, Nancy F. Hansen, J. Idol, V. Maduro, Baishali Maskeri, Jennifer C Mcdowell, Morgan Park, Pamela J. Thomas, Alice C. Young, R. Blakesley, D. Muzny, E. Sodergren, D. Wheeler, K. Worley, Huaiyang Jiang, G. Weinstock, R. Gibbs, T. Graves, R. Fulton, E. Mardis, R. Wilson, M. Clamp, James A. Cuff, S. Gnerre, D. Jaffe, Jean L. Chang, K. Lindblad-Toh, E. Lander, M. Koriabine, M. Nefedov, K. Osoegawa, Y. Yoshinaga, B. Zhu, P. D. de Jong
12 2007
12
🐜
🦁 Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis
A. Löytynoja, N. Goldman
9 2008
9
🦁
🦁 Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis
A. Löytynoja, N. Goldman
9 2008
9
🦁
🦁 Phylogeny-aware alignment with PRANK.
A. Löytynoja
9 2014
9
🦁
🦁 webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser
A. Löytynoja, N. Goldman
8 2010
8
🦁
🐜 Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome.
77 auth. E. Margulies, G. Cooper, G. Asimenos, D. Thomas, Colin N. Dewey, A. Siepel, E. Birney, Damian Keefe, Ariel S. Schwartz, Minmei Hou, James Taylor, S. Nikolaev, J. Montoya-Burgos, A. Löytynoja, S. Whelan, ... F. Pardi, Tim Massingham, James B. Brown, P. Bickel, I. Holmes, J. Mullikin, A. Ureta-Vidal, B. Paten, Eric A. Stone, K. Rosenbloom, W. Kent, G. Bouffard, Xiaobin Guan, Nancy F. Hansen, J. Idol, V. Maduro, Baishali Maskeri, Jennifer C Mcdowell, Morgan Park, Pamela J. Thomas, Alice C. Young, R. Blakesley, D. Muzny, E. Sodergren, D. Wheeler, K. Worley, Huaiyang Jiang, G. Weinstock, R. Gibbs, T. Graves, R. Fulton, E. Mardis, R. Wilson, M. Clamp, James A. Cuff, S. Gnerre, D. Jaffe, Jean L. Chang, K. Lindblad-Toh, E. Lander, A. Hinrichs, Heather Trumbower, H. Clawson, A. Zweig, R. Kuhn, G. Barber, R. Harte, D. Karolchik, M. Field, Richard A. Moore, Carrie A. Matthewson, J. Schein, M. Marra, S. Antonarakis, S. Batzoglou, N. Goldman, R. Hardison, D. Haussler, W. Miller, L. Pachter, E. Green, A. Sidow
7 2007
7
🐜
🦁 A hidden Markov model for progressive multiple alignment
A. Löytynoja, M. Milinkovitch
7 2003
7
🦁
🐜 Matrilinear phylogeography of Atlantic salmon (Salmo salar L.) in Europe and postglacial colonization of the Baltic Sea area
16 auth. J. Nilsson, R. Gross, T. Asplund, O. Dove, H. Jansson, J. Kelloniemi, K. Kohlmann, A. Löytynoja, E. Nielsen, T. Paaver, ... C. Primmer, S. Titov, A. Vasemägi, A. Veselov, T. Öst, J. Lumme
7 2001
7
🐜
🦁 SOAP, cleaning multiple alignments from unstable blocks
A. Löytynoja, M. Milinkovitch
7 2001
7
🦁
🦁 Accurate extension of multiple sequence alignments using a phylogeny-aware graph algorithm
A. Löytynoja, Albert J. Vilella, N. Goldman
7 2012
7
🦁
🐬 An inducible genome editing system for plants
Xin Wang, L. Ye, Munan Lyu, R. Ursache, A. Löytynoja, Ari Pekka Mähönen
6 2020
6
🐬
🐜 Mechanistic insights into the evolution of DUF26-containing proteins in land plants
11 auth. Aleksia Vaattovaara, B. Brandt, Sitaram Rajaraman, O. Safronov, A. Veidenberg, M. Luklová, ... J. Kangasjärvi, A. Löytynoja, M. Hothorn, J. Salojärvi, Michael Wrzaczek
6 2018
6
🐜
🐜 A High-Quality Assembly of the Nine-Spined Stickleback (Pungitius pungitius) Genome
9 auth. S. Varadharajan, P. Rastas, A. Löytynoja, Michael Matschiner, Federico C. F. Calboli, Baocheng Guo, ... A. Nederbragt, K. Jakobsen, J. Merilä
6 2019
6
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