π
|
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
310 auth.
E. Birney,
J. Stamatoyannopoulos,
A. Dutta,
R. GuigΓ³,
T. Gingeras,
E. Margulies,
Z. Weng,
M. Snyder,
E. Dermitzakis,
R. Thurman,
Michael S. Kuehn,
Christopher M. Taylor,
Shane J. Neph,
Christoph M. Koch,
S. Asthana,
...
A. Malhotra,
I. Adzhubei,
J. Greenbaum,
R. Andrews,
Paul Flicek,
Patrick J Boyle,
Hua Cao,
N. Carter,
Gayle K. Clelland,
S. Davis,
Nathan Day,
P. Dhami,
Shane C. Dillon,
M. Dorschner,
H. Fiegler,
P. Giresi,
J. Goldy,
M. Hawrylycz,
Andrew K. Haydock,
R. Humbert,
K. James,
Brett E. Johnson,
Ericka M. Johnson,
Tristan Frum,
Elizabeth R. Rosenzweig,
N. Karnani,
K. Lee,
Gregory Lefebvre,
P. Navas,
Fidencio V. Neri,
Stephen C. J. Parker,
P. Sabo,
R. Sandstrom,
A. Shafer,
D. Vetrie,
M. Weaver,
S. Wilcox,
Man Yu,
F. Collins,
J. Dekker,
J. Lieb,
T. Tullius,
G. Crawford,
S. Sunyaev,
W. S. Noble,
I. Dunham,
F. Denoeud,
A. Reymond,
P. Kapranov,
J. Rozowsky,
D. Zheng,
R. Castelo,
A. Frankish,
J. Harrow,
Srinka Ghosh,
A. Sandelin,
I. Hofacker,
R. Baertsch,
Damian Keefe,
S. Dike,
Jill Cheng,
H. Hirsch,
E. Sekinger,
Julien Lagarde,
J. F. Abril,
Atif Shahab,
Christoph Flamm,
C. Fried,
J. HackermΓΌller,
Jana Hertel,
Manja Lindemeyer,
Kristin Missal,
Andrea Tanzer,
Stefan Washietl,
J. Korbel,
O. Emanuelsson,
J. S. Pedersen,
N. Holroyd,
Ruth Taylor,
D. Swarbreck,
N. Matthews,
M. Dickson,
D. Thomas,
M. Weirauch,
J. Gilbert,
J. Drenkow,
I. Bell,
X. Zhao,
K. Srinivasan,
W. Sung,
H. Ooi,
K. Chiu,
S. Foissac,
T. Alioto,
M. Brent,
L. Pachter,
M. Tress,
A. Valencia,
S. Choo,
C. Choo,
C. Ucla,
C. Manzano,
Carine Wyss,
E. Cheung,
T. Clark,
James B. Brown,
M. Ganesh,
Sandeep Patel,
H. Tammana,
Jacqueline Chrast,
Charlotte N. Henrichsen,
C. Kai,
J. Kawai,
Ugrappa Nagalakshmi,
Jiaqian Wu,
Zheng Lian,
Jin Lian,
P. Newburger,
Xueqing Zhang,
P. Bickel,
J. Mattick,
Piero Carninci,
Y. Hayashizaki,
S. Weissman,
T. Hubbard,
R. M. Myers,
J. Rogers,
P. Stadler,
T. Lowe,
Chia-Lin Wei,
Y. Ruan,
K. Struhl,
M. Gerstein,
S. Antonarakis,
Yutao Fu,
E. Green,
Ulas KaraΓΆz,
A. Siepel,
James Taylor,
L. Liefer,
K. Wetterstrand,
P. Good,
E. Feingold,
M. Guyer,
G. Cooper,
G. Asimenos,
Colin N. Dewey,
Minmei Hou,
S. Nikolaev,
J. Montoya-Burgos,
A. LΓΆytynoja,
S. Whelan,
F. Pardi,
Tim Massingham,
Haiyan Huang,
Na Zhang,
I. Holmes,
J. Mullikin,
A. Ureta-Vidal,
B. Paten,
Michael R. Seringhaus,
D. Church,
K. Rosenbloom,
W. Kent,
Eric A. Stone,
S. Batzoglou,
N. Goldman,
R. Hardison,
D. Haussler,
Webb Miller,
A. Sidow,
N. Trinklein,
Zhengdong D. Zhang,
Leah Barrera,
R. Stuart,
D. King,
A. Ameur,
Stefan Enroth,
M. Bieda,
Jonghwan Kim,
A. Bhinge,
N. Jiang,
Jun Liu,
Fei Yao,
V. Vega,
C. Lee,
A. Yang,
Z. Moqtaderi,
Zhou Zhu,
Xiaoqin Xu,
S. Squazzo,
M. Oberley,
David Inman,
Michael A. Singer,
T. Richmond,
Kyle J. Munn,
Γ. Rada-Iglesias,
O. Wallerman,
J. Komorowski,
J. Fowler,
Phillippe Couttet,
Alexander W. Bruce,
O. Dovey,
P. Ellis,
C. Langford,
D. Nix,
G. Euskirchen,
S. Hartman,
A. Urban,
P. Kraus,
Sara Van Calcar,
Nathaniel D. Heintzman,
Tae Hoon Kim,
Kun Wang,
Chunxu Qu,
G. Hon,
R. Luna,
C. Glass,
M. Rosenfeld,
S. F. Aldred,
S. Cooper,
Anason S. Halees,
J. M. Lin,
H. Shulha,
Xiaoling Zhang,
Mousheng Xu,
Jaafar N. Haidar,
Yon-Jong Yu,
V. Iyer,
Roland Green,
C. Wadelius,
P. Farnham,
B. Ren,
R. Harte,
A. Hinrichs,
Heather Trumbower,
H. Clawson,
Jennifer Hillman-Jackson,
A. Zweig,
Kayla E. Smith,
Archana Thakkapallayil,
G. Barber,
R. Kuhn,
D. Karolchik,
L. Armengol,
C. Bird,
P. D. de Bakker,
Andrew D. Kern,
N. LΓ³pez-Bigas,
Joel D Martin,
B. Stranger,
A. Woodroffe,
Eugene Davydov,
A. Dimas,
E. Eyras,
Ingileif B. HallgrΓmsdΓ³ttir,
J. Huppert,
M. Zody,
G. Abecasis,
X. Estivill,
G. Bouffard,
Xiaobin Guan,
Nancy F. Hansen,
J. Idol,
V. Maduro,
Baishali Maskeri,
Jennifer C Mcdowell,
Morgan Park,
Pamela J. Thomas,
Alice C. Young,
R. Blakesley,
D. Muzny,
E. Sodergren,
D. Wheeler,
K. Worley,
Huaiyang Jiang,
G. Weinstock,
R. Gibbs,
T. Graves,
R. Fulton,
E. Mardis,
R. Wilson,
M. Clamp,
James A. Cuff,
S. Gnerre,
D. Jaffe,
Jean L. Chang,
K. Lindblad-Toh,
E. Lander,
M. Koriabine,
M. Nefedov,
K. Osoegawa,
Y. Yoshinaga,
B. Zhu,
P. D. de Jong
|
12 |
2007 |
12 π
|
π
|
RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription
22 auth.
P. Kapranov,
Jill Cheng,
S. Dike,
D. Nix,
R. Duttagupta,
A. Willingham,
P. Stadler,
Jana Hertel,
J. HackermΓΌller,
I. Hofacker,
...
I. Bell,
E. Cheung,
J. Drenkow,
E. Dumais,
Sandeep Patel,
G. Helt,
M. Ganesh,
Srinka Ghosh,
A. Piccolboni,
V. Sementchenko,
H. Tammana,
T. Gingeras
|
11 |
2007 |
11 π
|
π
|
The ENCODE (ENCyclopedia Of DNA Elements) Project
197 auth.
E. Feingold,
P. Good,
M. Guyer,
S. Kamholz,
L. Liefer,
K. Wetterstrand,
F. Collins,
T. Gingeras,
D. Kampa,
E. Sekinger,
Jill Cheng,
H. Hirsch,
Srinka Ghosh,
Z. Zhu,
Sandeep Patel,
...
A. Piccolboni,
A. Yang,
H. Tammana,
S. Bekiranov,
P. Kapranov,
R. Harrison,
G. Church,
K. Struhl,
B. Ren,
Tae Hoon Kim,
Leah Barrera,
Chunxu Qu,
S. V. Calcar,
R. Luna,
C. Glass,
M. Rosenfeld,
R. GuigΓ³,
S. Antonarakis,
E. Birney,
M. Brent,
L. Pachter,
A. Reymond,
E. Dermitzakis,
Colin N. Dewey,
Damian Keefe,
F. Denoeud,
Julien Lagarde,
J. Ashurst,
T. Hubbard,
J. Wesselink,
R. Castelo,
E. Eyras,
R. Myers,
A. Sidow,
S. Batzoglou,
N. Trinklein,
S. Hartman,
S. F. Aldred,
Elizabeth Anton,
D. I. Schroeder,
S. Marticke,
Leann Nguyen,
J. Schmutz,
J. Grimwood,
M. Dickson,
G. Cooper,
Eric A. Stone,
G. Asimenos,
M. Brudno,
Anindya Dutta,
N. Karnani,
Christopher M. Taylor,
H. K. Kim,
G. Robins,
G. Stamatoyannopoulos,
J. Stamatoyannopoulos,
M. Dorschner,
P. Sabo,
M. Hawrylycz,
R. Humbert,
J. Wallace,
Min Yu,
P. Navas,
M. McArthur,
William Stafford Noble,
I. Dunham,
Christof Koch,
R. Andrews,
Gayle K. Clelland,
S. Wilcox,
J. Fowler,
K. James,
Paul T. Groth,
O. Dovey,
P. Ellis,
Vicki L. Wraight,
A. Mungall,
P. Dhami,
H. Fiegler,
C. Langford,
N. Carter,
D. Vetrie,
M. Snyder,
G. Euskirchen,
A. Urban,
Ugrappa Nagalakshmi,
J. Rinn,
George V. Popescu,
Paul Bertone,
S. Hartman,
J. Rozowsky,
O. Emanuelsson,
Thomas E. Royce,
Sambath Chung,
M. Gerstein,
Zheng Lian,
Jin Lian,
Y. Nakayama,
S. Weissman,
V. Ε tolc,
W. Tongprasit,
H. Sethi,
Steven J. M. Jones,
M. Marra,
H. Shin,
J. Schein,
M. Clamp,
K. Lindblad-Toh,
Jean L. Chang,
D. Jaffe,
Michael Kamal,
E. Lander,
T. Mikkelsen,
J. Vinson,
M. Zody,
P. Jong,
K. Osoegawa,
M. Nefedov,
B. Zhu,
A. D. Baxevanis,
T. Wolfsberg,
G. Crawford,
J. Whittle,
I. Holt,
T. Vasicek,
D. Zhou,
S. Luo,
E. Green,
G. Bouffard,
E. Margulies,
M. Portnoy,
Nancy F. Hansen,
Pamela J. Thomas,
Jennifer C Mcdowell,
Baishali Maskeri,
Alice C. Young,
J. Idol,
R. Blakesley,
G. Schuler,
W. Miller,
R. Hardison,
L. Elnitski,
P. Shah,
S. Salzberg,
M. PerΘea,
William H. Majoros,
D. Haussler,
D. Thomas,
K. Rosenbloom,
H. Clawson,
A. Siepel,
W. Kent,
Z. Weng,
S. Jin,
Anason S. Halees,
H. Burden,
U. Karaoz,
Yutao Fu,
Yong Yu,
Chunming Ding,
C. Cantor,
R. Kingston,
J. Dennis,
Roland Green,
Michael A. Singer,
T. Richmond,
J. Norton,
P. Farnham,
M. Oberley,
D. Inman,
M. McCormick,
H. Kim,
C. Middle,
M. Pirrung,
Xiang-Dong Fu,
Y. S. Kwon,
Z. Ye,
J. Dekker,
T. Tabuchi,
N. Gheldof,
J. Dostie,
S. Harvey
|
11 |
2004 |
11 π
|
π
|
Transcriptional Maps of 10 Human Chromosomes at 5-Nucleotide Resolution
19 auth.
Jill Cheng,
P. Kapranov,
J. Drenkow,
S. Dike,
Shane A. Brubaker,
Sandeep Patel,
J. Long,
D. Stern,
H. Tammana,
G. Helt,
...
V. Sementchenko,
A. Piccolboni,
S. Bekiranov,
D. Bailey,
M. Ganesh,
Srinka Ghosh,
I. Bell,
D. Gerhard,
T. Gingeras
|
10 |
2005 |
10 π
|
π
|
Extensive sequencing of seven human genomes to characterize benchmark reference materials
53 auth.
J. Zook,
David Catoe,
Jennifer McDaniel,
Lindsay K. Vang,
Noah Spies,
A. Sidow,
Z. Weng,
Yuling Liu,
C. Mason,
Noah Alexander,
Elizabeth HΓ©naff,
Alexa B. R. McIntyre,
D. Chandramohan,
F. Chen,
Erich Jaeger,
...
A. Moshrefi,
K. Pham,
William Stedman,
T. Liang,
M. Saghbini,
Ε½. DΕΎakula,
A. Hastie,
H. Cao,
G. Deikus,
E. Schadt,
R. Sebra,
A. Bashir,
R. Truty,
Christopher C. Chang,
N. Gulbahce,
Keyan Zhao,
Srinka Ghosh,
F. Hyland,
Yutao Fu,
Mark J. P. Chaisson,
Chunlin Xiao,
Jonathan Trow,
S. Sherry,
A. Zaranek,
Madeleine P. Ball,
Jason R. Bobe,
Preston W. Estep,
G. Church,
Patrick J. Marks,
S. Kyriazopoulou-Panagiotopoulou,
Grace X. Y. Zheng,
Michael Schnall-Levin,
H. Ordonez,
Patrice A. Mudivarti,
Kristina M. Giorda,
Ying Sheng,
K. Rypdal,
M. Salit
|
9 |
2015 |
9 π
|
π
|
Osteoarthritis: MR imaging findings in different stages of disease and correlation with clinical findings.
7 auth.
T. Link,
L. Steinbach,
Srinka Ghosh,
M. Ries,
Ying Lu,
N. Lane,
...
S. Majumdar
|
9 |
2003 |
9 π
|
π
|
The transcriptional diversity of 25 Drosophila cell lines.
33 auth.
L. Cherbas,
A. Willingham,
Dayu Zhang,
Li Yang,
Yi Zou,
B. Eads,
J. Carlson,
J. Landolin,
P. Kapranov,
Jacqueline Dumais,
A. Samsonova,
Jeong-Hyeon Choi,
Johnny Roberts,
Carrie A. Davis,
Haixu Tang,
...
M. V. van Baren,
Srinka Ghosh,
A. Dobin,
K. Bell,
Wei Lin,
Laura Langton,
M. Duff,
A. Tenney,
C. Zaleski,
M. Brent,
R. Hoskins,
T. Kaufman,
J. Andrews,
B. Graveley,
N. Perrimon,
S. Celniker,
T. Gingeras,
P. Cherbas
|
7 |
2011 |
7 π
|
π¬
|
T2 relaxation time measurements in osteoarthritis.
E. David-Vaudey,
Srinka Ghosh,
M. Ries,
S. Majumdar
|
7 |
2004 |
7 π¬
|
π
|
Biological function of unannotated transcription during the early development of Drosophila melanogaster
11 auth.
J. Manak,
S. Dike,
V. Sementchenko,
P. Kapranov,
F. Biemar,
J. Long,
...
Jill Cheng,
I. Bell,
Srinka Ghosh,
A. Piccolboni,
T. Gingeras
|
7 |
2006 |
7 π
|
π
|
Temporal profile of replication of human chromosomes.
10 auth.
Yesu Jeon,
S. Bekiranov,
N. Karnani,
P. Kapranov,
Srinka Ghosh,
D. MacAlpine,
...
Charles Lee,
D. Hwang,
T. Gingeras,
Anindya Dutta
|
6 |
2005 |
6 π
|
π
|
Magnetic resonance imaging of normal and osteoarthritic trabecular bone structure in the human knee.
8 auth.
O. Beuf,
Srinka Ghosh,
D. Newitt,
T. Link,
L. Steinbach,
M. Ries,
...
N. Lane,
S. Majumdar
|
6 |
2002 |
6 π
|
π
|
Magnetic resonance imaging of normal and osteoarthritic trabecular bone structure in the human knee.
8 auth.
O. Beuf,
Srinka Ghosh,
D. Newitt,
T. Link,
L. Steinbach,
M. Ries,
...
N. Lane,
S. Majumdar
|
6 |
2002 |
6 π
|
π
|
Detection of human immunodeficiency virus type 1 in AIDS patients using amplification-mediated hybridization analyses: reproducibility and quantitative limitations.
14 auth.
G. Davis,
K. Blumeyer,
L. J. DiMichele,
K. M. Whitfield,
H. Chappelle,
N. L. Riggs,
Srinka Ghosh,
P. Kao,
E. Fahy,
D. Kwoh,
...
J. C. Guatelli,
Stephen A. Spector,
D. D. Richman,
T. Gingeras
|
4 |
1990 |
4 π
|