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🐜
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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
310 auth.
E. Birney,
J. Stamatoyannopoulos,
A. Dutta,
R. Guigó,
T. Gingeras,
E. Margulies,
Z. Weng,
M. Snyder,
E. Dermitzakis,
R. Thurman,
Michael S. Kuehn,
Christopher M. Taylor,
Shane J. Neph,
Christoph M. Koch,
S. Asthana,
...
A. Malhotra,
I. Adzhubei,
J. Greenbaum,
R. Andrews,
Paul Flicek,
Patrick J Boyle,
Hua Cao,
N. Carter,
Gayle K. Clelland,
S. Davis,
Nathan Day,
P. Dhami,
Shane C. Dillon,
M. Dorschner,
H. Fiegler,
P. Giresi,
J. Goldy,
M. Hawrylycz,
Andrew K. Haydock,
R. Humbert,
K. James,
Brett E. Johnson,
Ericka M. Johnson,
Tristan Frum,
Elizabeth R. Rosenzweig,
N. Karnani,
K. Lee,
Gregory Lefebvre,
P. Navas,
Fidencio V. Neri,
Stephen C. J. Parker,
P. Sabo,
R. Sandstrom,
A. Shafer,
D. Vetrie,
M. Weaver,
S. Wilcox,
Man Yu,
F. Collins,
J. Dekker,
J. Lieb,
T. Tullius,
G. Crawford,
S. Sunyaev,
W. S. Noble,
I. Dunham,
F. Denoeud,
A. Reymond,
P. Kapranov,
J. Rozowsky,
D. Zheng,
R. Castelo,
A. Frankish,
J. Harrow,
Srinka Ghosh,
A. Sandelin,
I. Hofacker,
R. Baertsch,
Damian Keefe,
S. Dike,
Jill Cheng,
H. Hirsch,
E. Sekinger,
Julien Lagarde,
J. F. Abril,
Atif Shahab,
Christoph Flamm,
C. Fried,
J. Hackermüller,
Jana Hertel,
Manja Lindemeyer,
Kristin Missal,
Andrea Tanzer,
Stefan Washietl,
J. Korbel,
O. Emanuelsson,
J. S. Pedersen,
N. Holroyd,
Ruth Taylor,
D. Swarbreck,
N. Matthews,
M. Dickson,
D. Thomas,
M. Weirauch,
J. Gilbert,
J. Drenkow,
I. Bell,
X. Zhao,
K. Srinivasan,
W. Sung,
H. Ooi,
K. Chiu,
S. Foissac,
T. Alioto,
M. Brent,
L. Pachter,
M. Tress,
A. Valencia,
S. Choo,
C. Choo,
C. Ucla,
C. Manzano,
Carine Wyss,
E. Cheung,
T. Clark,
James B. Brown,
M. Ganesh,
Sandeep Patel,
H. Tammana,
Jacqueline Chrast,
Charlotte N. Henrichsen,
C. Kai,
J. Kawai,
Ugrappa Nagalakshmi,
Jiaqian Wu,
Zheng Lian,
Jin Lian,
P. Newburger,
Xueqing Zhang,
P. Bickel,
J. Mattick,
Piero Carninci,
Y. Hayashizaki,
S. Weissman,
T. Hubbard,
R. M. Myers,
J. Rogers,
P. Stadler,
T. Lowe,
Chia-Lin Wei,
Y. Ruan,
K. Struhl,
M. Gerstein,
S. Antonarakis,
Yutao Fu,
E. Green,
Ulas Karaöz,
A. Siepel,
James Taylor,
L. Liefer,
K. Wetterstrand,
P. Good,
E. Feingold,
M. Guyer,
G. Cooper,
G. Asimenos,
Colin N. Dewey,
Minmei Hou,
S. Nikolaev,
J. Montoya-Burgos,
A. Löytynoja,
S. Whelan,
F. Pardi,
Tim Massingham,
Haiyan Huang,
Na Zhang,
I. Holmes,
J. Mullikin,
A. Ureta-Vidal,
B. Paten,
Michael R. Seringhaus,
D. Church,
K. Rosenbloom,
W. Kent,
Eric A. Stone,
S. Batzoglou,
N. Goldman,
R. Hardison,
D. Haussler,
Webb Miller,
A. Sidow,
N. Trinklein,
Zhengdong D. Zhang,
Leah Barrera,
R. Stuart,
D. King,
A. Ameur,
Stefan Enroth,
M. Bieda,
Jonghwan Kim,
A. Bhinge,
N. Jiang,
Jun Liu,
Fei Yao,
V. Vega,
C. Lee,
A. Yang,
Z. Moqtaderi,
Zhou Zhu,
Xiaoqin Xu,
S. Squazzo,
M. Oberley,
David Inman,
Michael A. Singer,
T. Richmond,
Kyle J. Munn,
Á. Rada-Iglesias,
O. Wallerman,
J. Komorowski,
J. Fowler,
Phillippe Couttet,
Alexander W. Bruce,
O. Dovey,
P. Ellis,
C. Langford,
D. Nix,
G. Euskirchen,
S. Hartman,
A. Urban,
P. Kraus,
Sara Van Calcar,
Nathaniel D. Heintzman,
Tae Hoon Kim,
Kun Wang,
Chunxu Qu,
G. Hon,
R. Luna,
C. Glass,
M. Rosenfeld,
S. F. Aldred,
S. Cooper,
Anason S. Halees,
J. M. Lin,
H. Shulha,
Xiaoling Zhang,
Mousheng Xu,
Jaafar N. Haidar,
Yon-Jong Yu,
V. Iyer,
Roland Green,
C. Wadelius,
P. Farnham,
B. Ren,
R. Harte,
A. Hinrichs,
Heather Trumbower,
H. Clawson,
Jennifer Hillman-Jackson,
A. Zweig,
Kayla E. Smith,
Archana Thakkapallayil,
G. Barber,
R. Kuhn,
D. Karolchik,
L. Armengol,
C. Bird,
P. D. de Bakker,
Andrew D. Kern,
N. López-Bigas,
Joel D Martin,
B. Stranger,
A. Woodroffe,
Eugene Davydov,
A. Dimas,
E. Eyras,
Ingileif B. Hallgrímsdóttir,
J. Huppert,
M. Zody,
G. Abecasis,
X. Estivill,
G. Bouffard,
Xiaobin Guan,
Nancy F. Hansen,
J. Idol,
V. Maduro,
Baishali Maskeri,
Jennifer C Mcdowell,
Morgan Park,
Pamela J. Thomas,
Alice C. Young,
R. Blakesley,
D. Muzny,
E. Sodergren,
D. Wheeler,
K. Worley,
Huaiyang Jiang,
G. Weinstock,
R. Gibbs,
T. Graves,
R. Fulton,
E. Mardis,
R. Wilson,
M. Clamp,
James A. Cuff,
S. Gnerre,
D. Jaffe,
Jean L. Chang,
K. Lindblad-Toh,
E. Lander,
M. Koriabine,
M. Nefedov,
K. Osoegawa,
Y. Yoshinaga,
B. Zhu,
P. D. de Jong
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12 |
2007 |
12
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The ENCODE (ENCyclopedia Of DNA Elements) Project
197 auth.
E. Feingold,
P. Good,
M. Guyer,
S. Kamholz,
L. Liefer,
K. Wetterstrand,
F. Collins,
T. Gingeras,
D. Kampa,
E. Sekinger,
Jill Cheng,
H. Hirsch,
Srinka Ghosh,
Z. Zhu,
Sandeep Patel,
...
A. Piccolboni,
A. Yang,
H. Tammana,
S. Bekiranov,
P. Kapranov,
R. Harrison,
G. Church,
K. Struhl,
B. Ren,
Tae Hoon Kim,
Leah Barrera,
Chunxu Qu,
S. V. Calcar,
R. Luna,
C. Glass,
M. Rosenfeld,
R. Guigó,
S. Antonarakis,
E. Birney,
M. Brent,
L. Pachter,
A. Reymond,
E. Dermitzakis,
Colin N. Dewey,
Damian Keefe,
F. Denoeud,
Julien Lagarde,
J. Ashurst,
T. Hubbard,
J. Wesselink,
R. Castelo,
E. Eyras,
R. Myers,
A. Sidow,
S. Batzoglou,
N. Trinklein,
S. Hartman,
S. F. Aldred,
Elizabeth Anton,
D. I. Schroeder,
S. Marticke,
Leann Nguyen,
J. Schmutz,
J. Grimwood,
M. Dickson,
G. Cooper,
Eric A. Stone,
G. Asimenos,
M. Brudno,
Anindya Dutta,
N. Karnani,
Christopher M. Taylor,
H. K. Kim,
G. Robins,
G. Stamatoyannopoulos,
J. Stamatoyannopoulos,
M. Dorschner,
P. Sabo,
M. Hawrylycz,
R. Humbert,
J. Wallace,
Min Yu,
P. Navas,
M. McArthur,
William Stafford Noble,
I. Dunham,
Christof Koch,
R. Andrews,
Gayle K. Clelland,
S. Wilcox,
J. Fowler,
K. James,
Paul T. Groth,
O. Dovey,
P. Ellis,
Vicki L. Wraight,
A. Mungall,
P. Dhami,
H. Fiegler,
C. Langford,
N. Carter,
D. Vetrie,
M. Snyder,
G. Euskirchen,
A. Urban,
Ugrappa Nagalakshmi,
J. Rinn,
George V. Popescu,
Paul Bertone,
S. Hartman,
J. Rozowsky,
O. Emanuelsson,
Thomas E. Royce,
Sambath Chung,
M. Gerstein,
Zheng Lian,
Jin Lian,
Y. Nakayama,
S. Weissman,
V. Štolc,
W. Tongprasit,
H. Sethi,
Steven J. M. Jones,
M. Marra,
H. Shin,
J. Schein,
M. Clamp,
K. Lindblad-Toh,
Jean L. Chang,
D. Jaffe,
Michael Kamal,
E. Lander,
T. Mikkelsen,
J. Vinson,
M. Zody,
P. Jong,
K. Osoegawa,
M. Nefedov,
B. Zhu,
A. D. Baxevanis,
T. Wolfsberg,
G. Crawford,
J. Whittle,
I. Holt,
T. Vasicek,
D. Zhou,
S. Luo,
E. Green,
G. Bouffard,
E. Margulies,
M. Portnoy,
Nancy F. Hansen,
Pamela J. Thomas,
Jennifer C Mcdowell,
Baishali Maskeri,
Alice C. Young,
J. Idol,
R. Blakesley,
G. Schuler,
W. Miller,
R. Hardison,
L. Elnitski,
P. Shah,
S. Salzberg,
M. Perțea,
William H. Majoros,
D. Haussler,
D. Thomas,
K. Rosenbloom,
H. Clawson,
A. Siepel,
W. Kent,
Z. Weng,
S. Jin,
Anason S. Halees,
H. Burden,
U. Karaoz,
Yutao Fu,
Yong Yu,
Chunming Ding,
C. Cantor,
R. Kingston,
J. Dennis,
Roland Green,
Michael A. Singer,
T. Richmond,
J. Norton,
P. Farnham,
M. Oberley,
D. Inman,
M. McCormick,
H. Kim,
C. Middle,
M. Pirrung,
Xiang-Dong Fu,
Y. S. Kwon,
Z. Ye,
J. Dekker,
T. Tabuchi,
N. Gheldof,
J. Dostie,
S. Harvey
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11 |
2004 |
11
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A high-resolution map of active promoters in the human genome
9 auth.
Tae Hoon Kim,
Leah Barrera,
Ming Zheng,
Chunxu Qu,
Michael A. Singer,
T. Richmond,
...
Ying N Wu,
Roland Green,
B. Ren
|
9 |
2005 |
9
🐜
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🐜
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Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays
24 auth.
P. Sabo,
Michael S. Kuehn,
R. Thurman,
Brett E. Johnson,
Ericka M. Johnson,
H. Cao,
Man Yu,
Elizabeth R. Rosenzweig,
J. Goldy,
Andrew K. Haydock,
...
M. Weaver,
A. Shafer,
Kristen Lee,
Fidencio V. Neri,
R. Humbert,
Michael A. Singer,
T. Richmond,
M. Dorschner,
M. McArthur,
M. Hawrylycz,
Roland Green,
P. Navas,
William Stafford Noble,
J. Stamatoyannopoulos
|
8 |
2006 |
8
🐜
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🐜
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Arginine methylation at histone H3R2 controls deposition of H3K4 trimethylation
9 auth.
A. Kirmizis,
H. Santos‐Rosa,
C. Penkett,
Michael A. Singer,
M. Vermeulen,
M. Mann,
...
J. Bähler,
Roland Green,
T. Kouzarides
|
8 |
2007 |
8
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🐬
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Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome.
M. Bieda,
Xiaoqin Xu,
Michael A. Singer,
Roland Green,
P. Farnham
|
8 |
2006 |
8
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🐜
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Bcl-6 mediates the germinal center B cell phenotype and lymphomagenesis through transcriptional repression of the DNA-damage sensor ATR
9 auth.
S. Ranuncolo,
J. Polo,
J. Dierov,
Michael A. Singer,
Tracy C. Kuo,
J. Greally,
...
Roland Green,
M. Carroll,
A. Melnick
|
8 |
2007 |
8
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🐬
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Distinct transcriptional outputs associated with mono- and dimethylated histone H3 arginine 2
A. Kirmizis,
H. Santos‐Rosa,
C. Penkett,
Michael A. Singer,
Roland Green,
T. Kouzarides
|
5 |
2009 |
5
🐬
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🐜
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Triplet-Sensitized Photodeprotection of Oligonucleotides in Solution and on Microarray Chips
10 auth.
D. Wöll,
S. Walbert,
K. Stengele,
Tom Albert,
T. Richmond,
J. Norton,
...
Michael A. Singer,
Roland Green,
W. Pfleiderer,
U. Steiner
|
5 |
2004 |
5
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🐬
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widespread role for E2F1 in the human genome Unbiased location analysis of E2F1-binding sites suggests a
M. Bieda,
Xiaoqin Xu,
Michael A. Singer,
Roland Green,
P. Farnham
|
2 |
2006 |
2
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