|
π
|
The Cancer Cell Line Encyclopedia enables predictive modeling of anticancer drug sensitivity
61 auth.
J. Barretina,
G. Caponigro,
Nicolas Stransky,
K. Venkatesan,
Adam A. Margolin,
Sungjoon Kim,
Christopher J. Wilson,
J. LehΓ‘r,
G. Kryukov,
D. Sonkin,
Anupama Reddy,
Manway Liu,
Lauren Murray,
M. Berger,
J. Monahan,
...
Paula Morais,
Jodi Meltzer,
A. Korejwa,
Judit JanΓ©-Valbuena,
F. Mapa,
Joseph Thibault,
Eva Bric-Furlong,
Pichai Raman,
Aaron Shipway,
I. Engels,
Jill Cheng,
Guoying Yu,
Jianjun Yu,
Peter Aspesi,
Melanie de Silva,
Kalpana Jagtap,
Michael D. Jones,
Li R. Wang,
C. Hatton,
E. Palescandolo,
Supriya Gupta,
Scott Mahan,
C. Sougnez,
R. Onofrio,
T. Liefeld,
L. Macconaill,
W. Winckler,
Michael Reich,
Nanxin Li,
J. Mesirov,
S. Gabriel,
G. Getz,
K. Ardlie,
Vivien W. Chan,
V. Myer,
B. Weber,
Jeff Porter,
M. Warmuth,
P. Finan,
Jennifer L. Harris,
M. Meyerson,
T. Golub,
Michael P. Morrissey,
W. Sellers,
R. Schlegel,
L. Garraway
|
12 |
2012 |
12
π
|
|
π
|
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
310 auth.
E. Birney,
J. Stamatoyannopoulos,
A. Dutta,
R. GuigΓ³,
T. Gingeras,
E. Margulies,
Z. Weng,
M. Snyder,
E. Dermitzakis,
R. Thurman,
Michael S. Kuehn,
Christopher M. Taylor,
Shane J. Neph,
Christoph M. Koch,
S. Asthana,
...
A. Malhotra,
I. Adzhubei,
J. Greenbaum,
R. Andrews,
Paul Flicek,
Patrick J Boyle,
Hua Cao,
N. Carter,
Gayle K. Clelland,
S. Davis,
Nathan Day,
P. Dhami,
Shane C. Dillon,
M. Dorschner,
H. Fiegler,
P. Giresi,
J. Goldy,
M. Hawrylycz,
Andrew K. Haydock,
R. Humbert,
K. James,
Brett E. Johnson,
Ericka M. Johnson,
Tristan Frum,
Elizabeth R. Rosenzweig,
N. Karnani,
K. Lee,
Gregory Lefebvre,
P. Navas,
Fidencio V. Neri,
Stephen C. J. Parker,
P. Sabo,
R. Sandstrom,
A. Shafer,
D. Vetrie,
M. Weaver,
S. Wilcox,
Man Yu,
F. Collins,
J. Dekker,
J. Lieb,
T. Tullius,
G. Crawford,
S. Sunyaev,
W. S. Noble,
I. Dunham,
F. Denoeud,
A. Reymond,
P. Kapranov,
J. Rozowsky,
D. Zheng,
R. Castelo,
A. Frankish,
J. Harrow,
Srinka Ghosh,
A. Sandelin,
I. Hofacker,
R. Baertsch,
Damian Keefe,
S. Dike,
Jill Cheng,
H. Hirsch,
E. Sekinger,
Julien Lagarde,
J. F. Abril,
Atif Shahab,
Christoph Flamm,
C. Fried,
J. HackermΓΌller,
Jana Hertel,
Manja Lindemeyer,
Kristin Missal,
Andrea Tanzer,
Stefan Washietl,
J. Korbel,
O. Emanuelsson,
J. S. Pedersen,
N. Holroyd,
Ruth Taylor,
D. Swarbreck,
N. Matthews,
M. Dickson,
D. Thomas,
M. Weirauch,
J. Gilbert,
J. Drenkow,
I. Bell,
X. Zhao,
K. Srinivasan,
W. Sung,
H. Ooi,
K. Chiu,
S. Foissac,
T. Alioto,
M. Brent,
L. Pachter,
M. Tress,
A. Valencia,
S. Choo,
C. Choo,
C. Ucla,
C. Manzano,
Carine Wyss,
E. Cheung,
T. Clark,
James B. Brown,
M. Ganesh,
Sandeep Patel,
H. Tammana,
Jacqueline Chrast,
Charlotte N. Henrichsen,
C. Kai,
J. Kawai,
Ugrappa Nagalakshmi,
Jiaqian Wu,
Zheng Lian,
Jin Lian,
P. Newburger,
Xueqing Zhang,
P. Bickel,
J. Mattick,
Piero Carninci,
Y. Hayashizaki,
S. Weissman,
T. Hubbard,
R. M. Myers,
J. Rogers,
P. Stadler,
T. Lowe,
Chia-Lin Wei,
Y. Ruan,
K. Struhl,
M. Gerstein,
S. Antonarakis,
Yutao Fu,
E. Green,
Ulas KaraΓΆz,
A. Siepel,
James Taylor,
L. Liefer,
K. Wetterstrand,
P. Good,
E. Feingold,
M. Guyer,
G. Cooper,
G. Asimenos,
Colin N. Dewey,
Minmei Hou,
S. Nikolaev,
J. Montoya-Burgos,
A. LΓΆytynoja,
S. Whelan,
F. Pardi,
Tim Massingham,
Haiyan Huang,
Na Zhang,
I. Holmes,
J. Mullikin,
A. Ureta-Vidal,
B. Paten,
Michael R. Seringhaus,
D. Church,
K. Rosenbloom,
W. Kent,
Eric A. Stone,
S. Batzoglou,
N. Goldman,
R. Hardison,
D. Haussler,
Webb Miller,
A. Sidow,
N. Trinklein,
Zhengdong D. Zhang,
Leah Barrera,
R. Stuart,
D. King,
A. Ameur,
Stefan Enroth,
M. Bieda,
Jonghwan Kim,
A. Bhinge,
N. Jiang,
Jun Liu,
Fei Yao,
V. Vega,
C. Lee,
A. Yang,
Z. Moqtaderi,
Zhou Zhu,
Xiaoqin Xu,
S. Squazzo,
M. Oberley,
David Inman,
Michael A. Singer,
T. Richmond,
Kyle J. Munn,
Γ. Rada-Iglesias,
O. Wallerman,
J. Komorowski,
J. Fowler,
Phillippe Couttet,
Alexander W. Bruce,
O. Dovey,
P. Ellis,
C. Langford,
D. Nix,
G. Euskirchen,
S. Hartman,
A. Urban,
P. Kraus,
Sara Van Calcar,
Nathaniel D. Heintzman,
Tae Hoon Kim,
Kun Wang,
Chunxu Qu,
G. Hon,
R. Luna,
C. Glass,
M. Rosenfeld,
S. F. Aldred,
S. Cooper,
Anason S. Halees,
J. M. Lin,
H. Shulha,
Xiaoling Zhang,
Mousheng Xu,
Jaafar N. Haidar,
Yon-Jong Yu,
V. Iyer,
Roland Green,
C. Wadelius,
P. Farnham,
B. Ren,
R. Harte,
A. Hinrichs,
Heather Trumbower,
H. Clawson,
Jennifer Hillman-Jackson,
A. Zweig,
Kayla E. Smith,
Archana Thakkapallayil,
G. Barber,
R. Kuhn,
D. Karolchik,
L. Armengol,
C. Bird,
P. D. de Bakker,
Andrew D. Kern,
N. LΓ³pez-Bigas,
Joel D Martin,
B. Stranger,
A. Woodroffe,
Eugene Davydov,
A. Dimas,
E. Eyras,
Ingileif B. HallgrΓmsdΓ³ttir,
J. Huppert,
M. Zody,
G. Abecasis,
X. Estivill,
G. Bouffard,
Xiaobin Guan,
Nancy F. Hansen,
J. Idol,
V. Maduro,
Baishali Maskeri,
Jennifer C Mcdowell,
Morgan Park,
Pamela J. Thomas,
Alice C. Young,
R. Blakesley,
D. Muzny,
E. Sodergren,
D. Wheeler,
K. Worley,
Huaiyang Jiang,
G. Weinstock,
R. Gibbs,
T. Graves,
R. Fulton,
E. Mardis,
R. Wilson,
M. Clamp,
James A. Cuff,
S. Gnerre,
D. Jaffe,
Jean L. Chang,
K. Lindblad-Toh,
E. Lander,
M. Koriabine,
M. Nefedov,
K. Osoegawa,
Y. Yoshinaga,
B. Zhu,
P. D. de Jong
|
12 |
2007 |
12
π
|
|
π
|
RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription
22 auth.
P. Kapranov,
Jill Cheng,
S. Dike,
D. Nix,
R. Duttagupta,
A. Willingham,
P. Stadler,
Jana Hertel,
J. HackermΓΌller,
I. Hofacker,
...
I. Bell,
E. Cheung,
J. Drenkow,
E. Dumais,
Sandeep Patel,
G. Helt,
M. Ganesh,
Srinka Ghosh,
A. Piccolboni,
V. Sementchenko,
H. Tammana,
T. Gingeras
|
11 |
2007 |
11
π
|
|
π
|
The ENCODE (ENCyclopedia Of DNA Elements) Project
197 auth.
E. Feingold,
P. Good,
M. Guyer,
S. Kamholz,
L. Liefer,
K. Wetterstrand,
F. Collins,
T. Gingeras,
D. Kampa,
E. Sekinger,
Jill Cheng,
H. Hirsch,
Srinka Ghosh,
Z. Zhu,
Sandeep Patel,
...
A. Piccolboni,
A. Yang,
H. Tammana,
S. Bekiranov,
P. Kapranov,
R. Harrison,
G. Church,
K. Struhl,
B. Ren,
Tae Hoon Kim,
Leah Barrera,
Chunxu Qu,
S. V. Calcar,
R. Luna,
C. Glass,
M. Rosenfeld,
R. GuigΓ³,
S. Antonarakis,
E. Birney,
M. Brent,
L. Pachter,
A. Reymond,
E. Dermitzakis,
Colin N. Dewey,
Damian Keefe,
F. Denoeud,
Julien Lagarde,
J. Ashurst,
T. Hubbard,
J. Wesselink,
R. Castelo,
E. Eyras,
R. Myers,
A. Sidow,
S. Batzoglou,
N. Trinklein,
S. Hartman,
S. F. Aldred,
Elizabeth Anton,
D. I. Schroeder,
S. Marticke,
Leann Nguyen,
J. Schmutz,
J. Grimwood,
M. Dickson,
G. Cooper,
Eric A. Stone,
G. Asimenos,
M. Brudno,
Anindya Dutta,
N. Karnani,
Christopher M. Taylor,
H. K. Kim,
G. Robins,
G. Stamatoyannopoulos,
J. Stamatoyannopoulos,
M. Dorschner,
P. Sabo,
M. Hawrylycz,
R. Humbert,
J. Wallace,
Min Yu,
P. Navas,
M. McArthur,
William Stafford Noble,
I. Dunham,
Christof Koch,
R. Andrews,
Gayle K. Clelland,
S. Wilcox,
J. Fowler,
K. James,
Paul T. Groth,
O. Dovey,
P. Ellis,
Vicki L. Wraight,
A. Mungall,
P. Dhami,
H. Fiegler,
C. Langford,
N. Carter,
D. Vetrie,
M. Snyder,
G. Euskirchen,
A. Urban,
Ugrappa Nagalakshmi,
J. Rinn,
George V. Popescu,
Paul Bertone,
S. Hartman,
J. Rozowsky,
O. Emanuelsson,
Thomas E. Royce,
Sambath Chung,
M. Gerstein,
Zheng Lian,
Jin Lian,
Y. Nakayama,
S. Weissman,
V. Ε tolc,
W. Tongprasit,
H. Sethi,
Steven J. M. Jones,
M. Marra,
H. Shin,
J. Schein,
M. Clamp,
K. Lindblad-Toh,
Jean L. Chang,
D. Jaffe,
Michael Kamal,
E. Lander,
T. Mikkelsen,
J. Vinson,
M. Zody,
P. Jong,
K. Osoegawa,
M. Nefedov,
B. Zhu,
A. D. Baxevanis,
T. Wolfsberg,
G. Crawford,
J. Whittle,
I. Holt,
T. Vasicek,
D. Zhou,
S. Luo,
E. Green,
G. Bouffard,
E. Margulies,
M. Portnoy,
Nancy F. Hansen,
Pamela J. Thomas,
Jennifer C Mcdowell,
Baishali Maskeri,
Alice C. Young,
J. Idol,
R. Blakesley,
G. Schuler,
W. Miller,
R. Hardison,
L. Elnitski,
P. Shah,
S. Salzberg,
M. PerΘea,
William H. Majoros,
D. Haussler,
D. Thomas,
K. Rosenbloom,
H. Clawson,
A. Siepel,
W. Kent,
Z. Weng,
S. Jin,
Anason S. Halees,
H. Burden,
U. Karaoz,
Yutao Fu,
Yong Yu,
Chunming Ding,
C. Cantor,
R. Kingston,
J. Dennis,
Roland Green,
Michael A. Singer,
T. Richmond,
J. Norton,
P. Farnham,
M. Oberley,
D. Inman,
M. McCormick,
H. Kim,
C. Middle,
M. Pirrung,
Xiang-Dong Fu,
Y. S. Kwon,
Z. Ye,
J. Dekker,
T. Tabuchi,
N. Gheldof,
J. Dostie,
S. Harvey
|
11 |
2004 |
11
π
|
|
π¦
|
Transcriptional Maps of 10 Human Chromosomes at 5-Nucleotide Resolution
19 auth.
Jill Cheng,
P. Kapranov,
J. Drenkow,
S. Dike,
Shane A. Brubaker,
Sandeep Patel,
J. Long,
D. Stern,
H. Tammana,
G. Helt,
...
V. Sementchenko,
A. Piccolboni,
S. Bekiranov,
D. Bailey,
M. Ganesh,
Srinka Ghosh,
I. Bell,
D. Gerhard,
T. Gingeras
|
10 |
2005 |
10
π¦
|
|
π
|
Unbiased Mapping of Transcription Factor Binding Sites along Human Chromosomes 21 and 22 Points to Widespread Regulation of Noncoding RNAs
20 auth.
S. Cawley,
S. Bekiranov,
H. Ng,
P. Kapranov,
E. Sekinger,
D. Kampa,
A. Piccolboni,
V. Sementchenko,
Jill Cheng,
A. J. Williams,
...
R. Wheeler,
Brant Wong,
J. Drenkow,
M. Yamanaka,
Sandeep Patel,
Shane A. Brubaker,
H. Tammana,
G. Helt,
K. Struhl,
T. Gingeras
|
10 |
2004 |
10
π
|
|
π
|
Global transcription in pluripotent embryonic stem cells.
13 auth.
S. Efroni,
R. Duttagupta,
Jill Cheng,
Hesam Dehghani,
Daniel J. Hoeppner,
Chandravanu Dash,
D. Bazett-Jones,
S. L. Le Grice,
R. McKay,
K. Buetow,
...
T. Gingeras,
T. Misteli,
E. Meshorer
|
9 |
2008 |
9
π
|
|
π
|
Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22.
12 auth.
D. Kampa,
Jill Cheng,
P. Kapranov,
M. Yamanaka,
Shane A. Brubaker,
S. Cawley,
...
J. Drenkow,
A. Piccolboni,
S. Bekiranov,
G. Helt,
H. Tammana,
T. Gingeras
|
9 |
2004 |
9
π
|
|
π
|
NetAffx: Affymetrix probesets and annotations
9 auth.
Guoying Liu,
A. Loraine,
R. Shigeta,
M. Cline,
Jill Cheng,
V. Valmeekam,
...
Shaw Sun,
D. Kulp,
Michael A. Siani-Rose
|
9 |
2003 |
9
π
|
|
π
|
Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays.
7 auth.
P. Kapranov,
J. Drenkow,
Jill Cheng,
J. Long,
G. Helt,
S. Dike,
...
T. Gingeras
|
8 |
2005 |
8
π
|
|
π
|
Biological function of unannotated transcription during the early development of Drosophila melanogaster
11 auth.
J. Manak,
S. Dike,
V. Sementchenko,
P. Kapranov,
F. Biemar,
J. Long,
...
Jill Cheng,
I. Bell,
Srinka Ghosh,
A. Piccolboni,
T. Gingeras
|
7 |
2006 |
7
π
|
|
π
|
PSTPIP: A Tyrosine Phosphorylated Cleavage Furrowβassociated Protein that Is a Substrate for a PEST Tyrosine Phosphatase
8 auth.
S. Spencer,
D. Dowbenko,
Jill Cheng,
Wenlu Li,
J. Brush,
S. Utzig,
...
V. Simanis,
L. Lasky
|
7 |
1997 |
7
π
|
|
π
|
Addendum: The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity
61 auth.
J. Barretina,
G. Caponigro,
Nicolas Stransky,
K. Venkatesan,
Adam A. Margolin,
Sungjoon Kim,
Christopher J.Wilson,
J. LehΓ‘r,
G. Kryukov,
D. Sonkin,
Anupama Reddy,
Manway Liu,
Lauren Murray,
M. Berger,
J. Monahan,
...
Paula Morais,
Jodi Meltzer,
A. Korejwa,
Judit JanΓ©-Valbuena,
F. Mapa,
Joseph Thibault,
Eva Bric-Furlong,
Pichai Raman,
Aaron Shipway,
I. Engels,
Jill Cheng,
Guoying Yu,
Jianjun Yu,
Peter Aspesi,
M. Silva,
Kalpana Jagtap,
Michael D. Jones,
Li R. Wang,
C. Hatton,
E. Palescandolo,
Supriya Gupta,
Scott Mahan,
C. Sougnez,
R. Onofrio,
T. Liefeld,
L. Macconaill,
W. Winckler,
Michael Reich,
Nanxin Li,
J. Mesirov,
S. Gabriel,
G. Getz,
K. Ardlie,
Vivien W. Chan,
V. Myer,
B. Weber,
Jeff Porter,
M. Warmuth,
P. Finan,
Jennifer L. Harris,
M. Meyerson,
T. Golub,
Michael P. Morrissey,
W. Sellers,
R. Schlegel,
L. Garraway
|
7 |
2012 |
7
π
|
|
π¦
|
A Knowledge-Based Clustering Algorithm Driven by Gene Ontology
7 auth.
Jill Cheng,
M. Cline,
John Martin,
David Finkelstein,
Tarif Awad,
D. Kulp,
...
Michael A. Siani-Rose
|
6 |
2004 |
6
π¦
|
