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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
310 auth.
E. Birney,
J. Stamatoyannopoulos,
A. Dutta,
R. Guigó,
T. Gingeras,
E. Margulies,
Z. Weng,
M. Snyder,
E. Dermitzakis,
R. Thurman,
Michael S. Kuehn,
Christopher M. Taylor,
Shane J. Neph,
Christoph M. Koch,
S. Asthana,
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A. Malhotra,
I. Adzhubei,
J. Greenbaum,
R. Andrews,
Paul Flicek,
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Hua Cao,
N. Carter,
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P. Dhami,
Shane C. Dillon,
M. Dorschner,
H. Fiegler,
P. Giresi,
J. Goldy,
M. Hawrylycz,
Andrew K. Haydock,
R. Humbert,
K. James,
Brett E. Johnson,
Ericka M. Johnson,
Tristan Frum,
Elizabeth R. Rosenzweig,
N. Karnani,
K. Lee,
Gregory Lefebvre,
P. Navas,
Fidencio V. Neri,
Stephen C. J. Parker,
P. Sabo,
R. Sandstrom,
A. Shafer,
D. Vetrie,
M. Weaver,
S. Wilcox,
Man Yu,
F. Collins,
J. Dekker,
J. Lieb,
T. Tullius,
G. Crawford,
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W. S. Noble,
I. Dunham,
F. Denoeud,
A. Reymond,
P. Kapranov,
J. Rozowsky,
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R. Castelo,
A. Frankish,
J. Harrow,
Srinka Ghosh,
A. Sandelin,
I. Hofacker,
R. Baertsch,
Damian Keefe,
S. Dike,
Jill Cheng,
H. Hirsch,
E. Sekinger,
Julien Lagarde,
J. F. Abril,
Atif Shahab,
Christoph Flamm,
C. Fried,
J. Hackermüller,
Jana Hertel,
Manja Lindemeyer,
Kristin Missal,
Andrea Tanzer,
Stefan Washietl,
J. Korbel,
O. Emanuelsson,
J. S. Pedersen,
N. Holroyd,
Ruth Taylor,
D. Swarbreck,
N. Matthews,
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M. Brent,
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A. Valencia,
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C. Ucla,
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Carine Wyss,
E. Cheung,
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James B. Brown,
M. Ganesh,
Sandeep Patel,
H. Tammana,
Jacqueline Chrast,
Charlotte N. Henrichsen,
C. Kai,
J. Kawai,
Ugrappa Nagalakshmi,
Jiaqian Wu,
Zheng Lian,
Jin Lian,
P. Newburger,
Xueqing Zhang,
P. Bickel,
J. Mattick,
Piero Carninci,
Y. Hayashizaki,
S. Weissman,
T. Hubbard,
R. M. Myers,
J. Rogers,
P. Stadler,
T. Lowe,
Chia-Lin Wei,
Y. Ruan,
K. Struhl,
M. Gerstein,
S. Antonarakis,
Yutao Fu,
E. Green,
Ulas Karaöz,
A. Siepel,
James Taylor,
L. Liefer,
K. Wetterstrand,
P. Good,
E. Feingold,
M. Guyer,
G. Cooper,
G. Asimenos,
Colin N. Dewey,
Minmei Hou,
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J. Montoya-Burgos,
A. Löytynoja,
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J. Mullikin,
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Michael R. Seringhaus,
D. Church,
K. Rosenbloom,
W. Kent,
Eric A. Stone,
S. Batzoglou,
N. Goldman,
R. Hardison,
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N. Trinklein,
Zhengdong D. Zhang,
Leah Barrera,
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Stefan Enroth,
M. Bieda,
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A. Bhinge,
N. Jiang,
Jun Liu,
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V. Vega,
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C. Glass,
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Anason S. Halees,
J. M. Lin,
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Yon-Jong Yu,
V. Iyer,
Roland Green,
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A. Hinrichs,
Heather Trumbower,
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Jennifer Hillman-Jackson,
A. Zweig,
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G. Barber,
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D. Karolchik,
L. Armengol,
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N. López-Bigas,
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B. Stranger,
A. Woodroffe,
Eugene Davydov,
A. Dimas,
E. Eyras,
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M. Zody,
G. Abecasis,
X. Estivill,
G. Bouffard,
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Nancy F. Hansen,
J. Idol,
V. Maduro,
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E. Sodergren,
D. Wheeler,
K. Worley,
Huaiyang Jiang,
G. Weinstock,
R. Gibbs,
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P. D. de Jong
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12 |
2007 |
12
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Predicting subcellular localization of proteins based on their N-terminal amino acid sequence.
O. Emanuelsson,
Henrik Nielsen,
S. Brunak,
G. Heijne
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12 |
2000 |
12
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The ENCODE (ENCyclopedia Of DNA Elements) Project
197 auth.
E. Feingold,
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L. Liefer,
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F. Collins,
T. Gingeras,
D. Kampa,
E. Sekinger,
Jill Cheng,
H. Hirsch,
Srinka Ghosh,
Z. Zhu,
Sandeep Patel,
...
A. Piccolboni,
A. Yang,
H. Tammana,
S. Bekiranov,
P. Kapranov,
R. Harrison,
G. Church,
K. Struhl,
B. Ren,
Tae Hoon Kim,
Leah Barrera,
Chunxu Qu,
S. V. Calcar,
R. Luna,
C. Glass,
M. Rosenfeld,
R. Guigó,
S. Antonarakis,
E. Birney,
M. Brent,
L. Pachter,
A. Reymond,
E. Dermitzakis,
Colin N. Dewey,
Damian Keefe,
F. Denoeud,
Julien Lagarde,
J. Ashurst,
T. Hubbard,
J. Wesselink,
R. Castelo,
E. Eyras,
R. Myers,
A. Sidow,
S. Batzoglou,
N. Trinklein,
S. Hartman,
S. F. Aldred,
Elizabeth Anton,
D. I. Schroeder,
S. Marticke,
Leann Nguyen,
J. Schmutz,
J. Grimwood,
M. Dickson,
G. Cooper,
Eric A. Stone,
G. Asimenos,
M. Brudno,
Anindya Dutta,
N. Karnani,
Christopher M. Taylor,
H. K. Kim,
G. Robins,
G. Stamatoyannopoulos,
J. Stamatoyannopoulos,
M. Dorschner,
P. Sabo,
M. Hawrylycz,
R. Humbert,
J. Wallace,
Min Yu,
P. Navas,
M. McArthur,
William Stafford Noble,
I. Dunham,
Christof Koch,
R. Andrews,
Gayle K. Clelland,
S. Wilcox,
J. Fowler,
K. James,
Paul T. Groth,
O. Dovey,
P. Ellis,
Vicki L. Wraight,
A. Mungall,
P. Dhami,
H. Fiegler,
C. Langford,
N. Carter,
D. Vetrie,
M. Snyder,
G. Euskirchen,
A. Urban,
Ugrappa Nagalakshmi,
J. Rinn,
George V. Popescu,
Paul Bertone,
S. Hartman,
J. Rozowsky,
O. Emanuelsson,
Thomas E. Royce,
Sambath Chung,
M. Gerstein,
Zheng Lian,
Jin Lian,
Y. Nakayama,
S. Weissman,
V. Štolc,
W. Tongprasit,
H. Sethi,
Steven J. M. Jones,
M. Marra,
H. Shin,
J. Schein,
M. Clamp,
K. Lindblad-Toh,
Jean L. Chang,
D. Jaffe,
Michael Kamal,
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William H. Majoros,
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A. Siepel,
W. Kent,
Z. Weng,
S. Jin,
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H. Burden,
U. Karaoz,
Yutao Fu,
Yong Yu,
Chunming Ding,
C. Cantor,
R. Kingston,
J. Dennis,
Roland Green,
Michael A. Singer,
T. Richmond,
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P. Farnham,
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N. Gheldof,
J. Dostie,
S. Harvey
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2004 |
11
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ChloroP, a neural network‐based method for predicting chloroplast transit peptides and their cleavage sites
O. Emanuelsson,
H. Nielsen,
G. Heijne
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10 |
1999 |
10
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Locating proteins in the cell using TargetP, SignalP and related tools
O. Emanuelsson,
Søren Brunak,
G. Heijne,
Henrik Nielsen
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10 |
2007 |
10
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What is a gene, post-ENCODE? History and updated definition.
10 auth.
M. Gerstein,
Can Bruce,
J. Rozowsky,
D. Zheng,
Jiang Du,
J. Korbel,
...
O. Emanuelsson,
Zhengdong D. Zhang,
S. Weissman,
M. Snyder
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9 |
2007 |
9
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Sorting Signals, N-Terminal Modifications and Abundance of the Chloroplast Proteome
7 auth.
B. Zybailov,
Heidi L. Rutschow,
G. Friso,
Andrea Rudella,
O. Emanuelsson,
Qi Sun,
...
K. V. van Wijk
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9 |
2008 |
9
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Detecting sequence signals in targeting peptides using deep learning
7 auth.
J. J. Almagro Armenteros,
M. Salvatore,
O. Emanuelsson,
O. Winther,
G. von Heijne,
A. Elofsson,
...
H. Nielsen
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9 |
2019 |
9
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Central Functions of the Lumenal and Peripheral Thylakoid Proteome of Arabidopsis Determined by Experimentation and Genome-Wide Prediction Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.010304.
11 auth.
J. Peltier,
O. Emanuelsson,
D. Kalume,
J. Ytterberg,
G. Friso,
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D. Liberles,
Linda Söderberg,
P. Roepstorff,
G. von Heijne,
K. V. van Wijk
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8 |
2002 |
8
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Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies.
12 auth.
G. Euskirchen,
J. Rozowsky,
Chia-Lin Wei,
W. Lee,
Zhengdong D. Zhang,
S. Hartman,
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O. Emanuelsson,
V. Štolc,
S. Weissman,
M. Gerstein,
Y. Ruan,
M. Snyder
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7 |
2007 |
7
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Prediction of organellar targeting signals.
O. Emanuelsson,
G. Heijne
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7 |
2001 |
7
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DNA replication-timing analysis of human chromosome 22 at high resolution and different developmental states.
11 auth.
E. White,
O. Emanuelsson,
David Scalzo,
Thomas E. Royce,
S. Kosak,
E. Oakeley,
...
S. Weissman,
M. Gerstein,
M. Groudine,
M. Snyder,
D. Schübeler
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7 |
2004 |
7
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In silico prediction of the peroxisomal proteome in fungi, plants and animals.
O. Emanuelsson,
A. Elofsson,
G. von Heijne,
S. Cristobal
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6 |
2003 |
6
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Sequencing Degraded RNA Addressed by 3' Tag Counting
B. Sigurgeirsson,
O. Emanuelsson,
J. Lundeberg
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6 |
2014 |
6
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