Argonaute—a database for gene regulation by mammalian microRNAs
10 auth.
Priyanka Shahi,
Serguei Loukianiouk,
Andreas Bohne-Lang,
M. Kenzelmann,
Stefan Küffer,
S. Maertens,
...
Roland Eils,
H. Gröne,
Norbert Gretz,
Benedikt Brors
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15 |
2005 |
15
2005
|
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
Bo Li,
Colin N. Dewey
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14 |
2011 |
14
2011
|
BLAST+: architecture and applications
7 auth.
Christiam Camacho,
G. Coulouris,
Vahram Avagyan,
Ning Ma,
Jason S. Papadopoulos,
Kevin Bealer,
...
Thomas L. Madden
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13 |
2009 |
13
2009
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pROC: an open-source package for R and S+ to analyze and compare ROC curves
7 auth.
X. Robin,
N. Turck,
A. Hainard,
N. Tiberti,
F. Lisacek,
Jean-Charles Sanchez,
...
Markus Müller
|
13 |
2011 |
13
2011
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GSVA: gene set variation analysis for microarray and RNA-Seq data
Sonja Hänzelmann,
R. Castelo,
J. Guinney
|
13 |
2013 |
13
2013
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MUSCLE: a multiple sequence alignment method with reduced time and space complexity
Robert C. Edgar
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13 |
2004 |
13
2004
|
Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool
8 auth.
Edward Y. Chen,
Christopher M. Tan,
Y. Kou,
Qiaonan Duan,
Zichen Wang,
G. Meirelles,
...
N. R. Clark,
Avi Ma’ayan
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12 |
2013 |
12
2013
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Genome sequence-based species delimitation with confidence intervals and improved distance functions
Jan P. Meier-Kolthoff,
Alexander F. Auch,
H. Klenk,
M. Göker
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12 |
2013 |
12
2013
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Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction
Jian Ye,
G. Coulouris,
I. Zaretskaya,
I. Cutcutache,
S. Rozen,
Thomas L. Madden
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12 |
2012 |
12
2012
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An automated method for finding molecular complexes in large protein interaction networks
Gary D. Bader,
Christopher W. V. Hogue
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12 |
2003 |
12
2003
|
ImageJ2: ImageJ for the next generation of scientific image data
7 auth.
C. Rueden,
J. Schindelin,
M. Hiner,
Barry E. Dezonia,
Alison E. Walter,
Ellen T. Arena,
...
K. Eliceiri
|
12 |
2017 |
12
2017
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The COG database: an updated version includes eukaryotes
18 auth.
Bmc Bioinformatics,
R. Tatusov,
N. Fedorova,
J. Jackson,
A. R. Jacobs,
B. Kiryutin,
E. Koonin,
D. M. Krylov,
R. Mazumder,
S. Mekhedov,
...
A. Nikolskaya,
B. Sridhar Rao,
S. Smirnov,
A. Sverdlov,
S. Vasudevan,
Y. Wolf,
Jodie J. Yin,
D. Natale
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12 |
2003 |
12
2003
|
Discriminative topological features reveal biological network mechanisms
9 auth.
Manuel Middendorf,
Etay Ziv,
Carter Adams,
Jen Hom,
Robin Koytcheff,
Chaya Levovitz,
...
Gregory Woods,
Linda Chen,
Chris Wiggins
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12 |
2004 |
12
2004
|
Gene selection and classification of microarray data using random forest
R. Díaz-Uriarte,
S. Á. D. Andrés
|
11 |
2006 |
11
2006
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Bio::Homology::InterologWalk - A Perl module to build putative protein-protein interaction networks through interolog mapping
Giuseppe Gallone,
T Ian Simpson,
J Douglas Armstrong,
Andrew P Jarman
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11 |
2011 |
11
2011
|
DNA methylation arrays as surrogate measures of cell mixture distribution
8 auth.
E. Houseman,
William P. Accomando,
D. Koestler,
B. Christensen,
C. Marsit,
H. Nelson,
...
J. Wiencke,
K. Kelsey
|
11 |
2012 |
11
2012
|
ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context
7 auth.
Adam A. Margolin,
I. Nemenman,
K. Basso,
C. Wiggins,
G. Stolovitzky,
R. Favera,
...
A. Califano
|
11 |
2004 |
11
2004
|
Gene finding in novel genomes
I. Korf
|
11 |
2004 |
11
2004
|
ANGSD: Analysis of Next Generation Sequencing Data
T. Korneliussen,
A. Albrechtsen,
R. Nielsen
|
11 |
2014 |
11
2014
|
