Iakes Ezkurdia's Profile

Role	Title	Level	Year	L/R
🐜	GENCODE: The reference human genome annotation for The ENCODE Project 41 auth. J. Harrow, A. Frankish, J. Gonzalez, Electra Tapanari, M. Diekhans, F. Kokocinski, Bronwen L. Aken, D. Barrell, A. Zadissa, S. Searle, If H. A. Barnes, A. Bignell, Veronika Boychenko, T. Hunt, M. Kay, ... Gaurab Mukherjee, J. Rajan, Gloria Despacio-Reyes, Gary I. Saunders, C. Steward, R. Harte, Michael F. Lin, C. Howald, Andrea Tanzer, T. Derrien, Jacqueline Chrast, Nathalie Walters, S. Balasubramanian, Baikang Pei, M. Tress, J. Rodríguez, Iakes Ezkurdia, Jeltje van Baren, M. Brent, D. Haussler, Manolis Kellis, A. Valencia, A. Reymond, M. Gerstein, R. Guigó, T. Hubbard	12	2012	12 🐜
🦁	Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes 9 auth. Iakes Ezkurdia, D. Juan, J. Rodríguez, A. Frankish, M. Diekhans, J. Harrow, ... Jesús Vázquez, A. Valencia, M. Tress	9	2014	9 🦁
🐜	SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification 19 auth. M. Tardaguila, Lorena de la Fuente, C. Martí, Cecile Pereira, Francisco J. Pardo-Palacios, Héctor del Risco, Marc Ferrell, Maravillas Mellado, Marissa G. Macchietto, K. Verheggen, ... Mariola J. Edelmann, Iakes Ezkurdia, Jesús Vázquez, M. Tress, A. Mortazavi, L. Martens, Susana Rodríguez-Navarro, V. Moreno-Manzano, A. Conesa	8	2017	8 🐜
🐜	APPRIS: annotation of principal and alternative splice isoforms 8 auth. J. Rodríguez, P. Maietta, Iakes Ezkurdia, A. Pietrelli, J. Wesselink, Gonzalo López, ... A. Valencia, M. Tress	7	2012	7 🐜
🐜	Mechanism of super-assembly of respiratory complexes III and IV 10 auth. S. Cogliati, E. Calvo, M. Loureiro, Adela M. Guaras, Rocío Nieto-Arellano, Carolina García-Poyatos, ... Iakes Ezkurdia, Nadia Mercader, J. Vázquez, J. Enríquez	7	2016	7 🐜
🦁	Progress and challenges in predicting protein-protein interaction sites Iakes Ezkurdia, L. Bartoli, P. Fariselli, R. Casadio, A. Valencia, M. Tress	7	2008	7 🦁
🐜	Chimeras taking shape: Potential functions of proteins encoded by chimeric RNA transcripts 11 auth. M. Frenkel-Morgenstern, Vincent Lacroix, Iakes Ezkurdia, Y. Levin, A. Gabashvili, J. Prilusky, ... Á. Del Pozo, M. Tress, Rory Johnson, R. Guigó, A. Valencia	7	2012	7 🐜
🐜	Perspectives on ENCODE 501 auth. F. Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal, Bronwen L. Aken, Rizi Ai, J. Akiyama, O. A. Jammal, Henry Amrhein, S. Anderson, Gregory Andrews, I. Antoshechkin, K. Ardlie, J. Armstrong, ... Matthew Astley, Budhaditya Banerjee, Amira A. Barkal, If H. A. Barnes, I. Barozzi, D. Barrell, Gemma Barson, Daniel Bates, Ulugbek K. Baymuradov, C. Bazile, Michael A. Beer, Samantha P. Beik, M. Bender, Ruth Bennett, L. Bouvrette, Bradley E. Bernstein, Andrew E. Berry, A. Bhaskar, A. Bignell, S. Blue, D. Bodine, C. Boix, Nathan Boley, Tyler Borrman, Beatrice Borsari, A. Boyle, Laurel A. Brandsmeier, A. Breschi, E. Bresnick, Jason A. Brooks, Michael Buckley, C. Burge, Rachel Byron, Eileen W. Cahill, Lingling Cai, Lulu Cao, Mark Carty, R. Castanon, Andres Castillo, H. Chaib, Esther T. Chan, Daniel R. Chee, Sora Chee, Huaming Chen, Jia-Yu Chen, Songjie Chen, J. M. Cherry, S. Chhetri, J. Choudhary, Jacqueline Chrast, Dongjun Chung, Declan Clarke, Neal A. L. Cody, Candice J. Coppola, J. Coursen, A. D'Ippolito, S. Dalton, Cassidy Danyko, C. Davidson, J. Dávila-Velderrain, Carrie A. Davis, J. Dekker, A. Deran, Gilberto Desalvo, Gloria Despacio-Reyes, Colin N. Dewey, D. Dickel, Morgan Diegel, M. Diekhans, V. Dileep, Bo Ding, S. Djebali, A. Dobin, Daniel Dominguez, S. Donaldson, J. Drenkow, T. Dreszer, Y. Drier, M. Duff, D. Dunn, Catharine L. Eastman, J. Ecker, Matthew D. Edwards, Nicole C. El-Ali, Shaimae I. Elhajjajy, Keri Elkins, A. Emili, C. Epstein, Rachel C. Evans, Iakes Ezkurdia, K. Fan, P. Farnham, Nina P. Farrell, E. Feingold, Anne-Maud Ferreira, Katherine I. Fisher-Aylor, Stephen Fitzgerald, Paul Flicek, Chuan-Sheng Foo, K. Fortier, A. Frankish, Peter Freese, Shaliu Fu, Xiang-Dong Fu, Yu Fu, Yoko Fukuda-Yuzawa, M. Fulciniti, Alister P. W. Funnell, I. Gabdank, Timur Galeev, M. Gao, C. G. Girón, Tyler H. Garvin, C. Gelboin-Burkhart, G. Georgolopoulos, M. Gerstein, B. Giardine, D. Gifford, D. Gilbert, Daniel A. Gilchrist, Shawn M. Gillespie, T. Gingeras, Peng Gong, Alvaro J. González, J. Gonzalez, P. Good, A. Goren, David U. Gorkin, B. Graveley, Michael Gray, J. Greenblatt, Ed Griffiths, M. Groudine, Fabian Grubert, Mengting Gu, R. Guigó, Hongbo Guo, Gamze Gursoy, M. Gutierrez-Arcelus, J. Halow, R. Hardison, Matthew Hardy, M. Hariharan, A. Harmanci, Anne N. Harrington, J. Harrow, Tatsunori B. Hashimoto, R. Hasz, Meital Hatan, E. Haugen, J. Hayes, Peng He, Yupeng He, Nastaran Heidari, David Hendrickson, Elisabeth F. Heuston, J. Hilton, B. Hitz, Abigail Hochman, Cory Holgren, Lei Hou, Shuyu Hou, Y. Hsiao, Shan-Chun Hsu, Hui Huang, T. Hubbard, Jack Huey, Timothy R. Hughes, T. Hunt, S. Ibarrientos, Robbyn Issner, M. Iwata, Osagie G. Izuogu, T. Jaakkola, Nader Jameel, Camden Jansen, Lixia Jiang, Peng Jiang, Audra K. Johnson, Rory Johnson, Irwin Jungreis, Madhura Kadaba, Maya Kasowski, M. Kasparian, Momoe Kato, R. Kaul, T. Kawli, M. Kay, Judy C. Keen, S. Keleş, C. Keller, D. Kelley, Manolis Kellis, Pouya Kheradpour, Daniel S. Kim, Anthony Kirilusha, R. Klein, B. Knoechel, Samantha Kuan, M. Kulik, Sushant Kumar, A. Kundaje, T. Kutyavin, Julien Lagarde, B. Lajoie, Nicole J. Lambert, John E Lazar, Ah Young Lee, Donghoon Lee, Elizabeth Lee, Jin-Wook Lee, Kristen Lee, C. Leslie, Shawn E. Levy, Bin Li, Hai-Ri Li, Nan Li, Shantao Li, Xiangrui Li, Yining Li, Jin Lian, Maxwell W. Libbrecht, Shin Lin, Y. Lin, Dianbo Liu, Jason Liu, Peng Liu, Tingting Liu, X. Liu, Yaping Liu, Maria Long, S. Lou, J. Loveland, Aiping Lu, Yuheng Lu, Eric Lécuyer, Lijia Ma, M. Mackiewicz, B. Mannion, M. Mannstadt, Deepa Manthravadi, G. Marinov, Fergal J. Martin, E. Mattei, Kenneth McCue, Megan McEown, G. McVicker, Sarah K. Meadows, A. Meissner, E. Mendenhall, C. L. Messer, W. Meuleman, Clifford A. Meyer, Steve Miller, Matthew G. Milton, Tejaswini Mishra, Dianna E. Moore, H. M. Moore, Samuel H. Moore, Jennifer R. Moran, A. Mortazavi, Jonathan M. Mudge, N. Munshi, Rabi Murad, R. Myers, V. Nandakumar, Preetha Nandi, A. Narasimha, Aditi K. Narayanan, H. Naughton, Fábio C. P. Navarro, P. Navas, Jurijs Nazarovs, Jemma Nelson, Shane J. Neph, Fidencio J. Neri, Joseph R. Nery, Amy R. Nesmith, J. S. Newberry, Kimberly M. Newberry, Vu Ngo, R. Nguyen, Tung Nguyen, Andrew Nishida, W. S. Noble, Catherine S. Novak, E. Novoa, Briana Nuñez, C. W. O'Donnell, S. Olson, Kathrina C. Onate, Ericka Otterman, Hakan Ozadam, Michael Pagan, T. Palden, X. Pan, Yongjin P. Park, E. Partridge, B. Paten, Florencia Pauli-Behn, M. Pazin, Baikang Pei, L. Pennacchio, Alexander R. Perez, Emily Perry, D. Pervouchine, Nishigandha Phalke, Quan T. Pham, D. H. Phanstiel, I. Plajzer-Frick, G. Pratt, H. Pratt, S. Preissl, J. Pritchard, Y. Pritykin, Michael J. Purcaro, Qian Qin, Giovanni Quinones-Valdez, Ines Rabano, Ernest Radovani, Anil Raj, N. Rajagopal, Oren Ram, L. Ramírez, Ricardo N. Ramirez, D. Rausch, S. Raychaudhuri, Joseph Raymond, Rozita Razavi, Timothy E. Reddy, Thomas M. Reimonn, Bing Ren, A. Reymond, Alex P. Reynolds, S. Rhie, Johannes Rinn, Miguel Rivera, J. Rivera-Mulia, Brian S. Roberts, J. Rodríguez, J. Rozowsky, Russell Ryan, Eric Rynes, Denis Salins, R. Sandstrom, Takayo Sasaki, S. Sathe, D. Savic, A. Scavelli, J. Scheiman, Christoph N. Schlaffner, J. Schloss, F. Schmitges, L. See, A. Sethi, M. Setty, A. Shafer, Shuo Shan, Eilon Sharon, Quan Shen, Yin Shen, R. Sherwood, Minyi Shi, Sunyoung Shin, N. Shoresh, Kyle T. Siebenthall, Cristina Sisu, T. Slifer, C. A. Sloan, Anna M. Smith, V. Snetkova, Michael P. Snyder, D. Spacek, Sharanya Srinivasan, R. Srivas, G. Stamatoyannopoulos, J. Stamatoyannopoulos, Rebecca Stanton, D. Steffan, Sandra Stehling-Sun, J. Strattan, Amanda Su, B. Sundararaman, M. Suner, Tahin Syed, Matt Szynkarek, Forrest Tanaka, D. Tenen, Mingxiang Teng, Jeffrey A. Thomas, David E. Toffey, M. Tress, Diane Trout, G. Trynka, J. Tsuji, S. Upchurch, Oana Ursu, Barbara Uszczynska-Ratajczak, Mia C. Uziel, A. Valencia, B. V. Biber, A. van der Velde, Eric L. Van Nostrand, Yekaterina Vaydylevich, Jesús Vázquez, Alec Victorsen, J. Vielmetter, J. Vierstra, A. Visel, A. Vlasova, Christopher M. Vockley, S. Volpi, Shinny Vong, Hao Wang, Mengchi Wang, Qin Wang, Ruth Wang, Tao Wang, Wen Wang, Xiao-feng Wang, Yanli Wang, N. Watson, Xintao Wei, Zhijie Wei, Hendrik Weisser, S. Weissman, Rene Welch, R. Welikson, Z. Weng, H. Westra, J. Whitaker, Collin G. White, Kevin P. White, Andre Wildberg, B. Williams, D. Wine, Heather Witt, B. Wold, Maxim Y Wolf, J. Wright, Rui Xiao, Xinshu Xiao, Jie Xu, Jinrui Xu, Koon-Kiu Yan, Yongqi Yan, Hongbo Yang, Xinqiong Yang, Yi-Wen Yang, G. Yardımcı, Brian A. Yee, Gene W. Yeo, Taylor Young, Tianxiong Yu, Feng Yue, C. Zaleski, C. Zang, Haoyang Zeng, Weihua Zeng, D. Zerbino, J. Zhai, L. Zhan, Y. Zhan, Bo Zhang, Jialing Zhang, Jing Zhang, Kaijie Zhang, Lijun Zhang, Peng Zhang, Qi Zhang, Xiao-ou Zhang, Yanxiao Zhang, Zhizhuo Zhang, Yuan Zhao, Ye Zheng, Guoqing Zhong, Xiao-Qiao Zhou, Yun Zhu, Jared Zimmerman, Michael P. Snyder, Bing Ren, R. Hardison, J. M. Cherry, Bradley E. Bernstein, E. Mendenhall, Paul Flicek	6	2020	6 🐜
🐬	Assessment of predictions submitted for the CASP6 comparative modeling category M. Tress, Iakes Ezkurdia, O. Graña, Gonzalo López, A. Valencia	6	2005	6 🐬
🦁	Most highly expressed protein-coding genes have a single dominant isoform. Iakes Ezkurdia, J. Rodríguez, E. Carrillo-de Santa Pau, Jesús Vázquez, A. Valencia, M. Tress	6	2015	6 🦁
🦁	Analyzing the First Drafts of the Human Proteome Iakes Ezkurdia, Jesús Vázquez, A. Valencia, M. Tress	6	2014	6 🦁
🦁	Comparative Proteomics Reveals a Significant Bias Toward Alternative Protein Isoforms with Conserved Structure and Function 8 auth. Iakes Ezkurdia, Á. Del Pozo, A. Frankish, J. Rodríguez, J. Harrow, K. Ashman, ... A. Valencia, M. Tress	6	2012	6 🦁