|
🐜
|
GENCODE reference annotation for the human and mouse genomes
55 auth.
A. Frankish,
M. Diekhans,
Anne-Maud Ferreira,
Rory Johnson,
Irwin Jungreis,
J. Loveland,
Jonathan M. Mudge,
Cristina Sisu,
James C. Wright,
J. Armstrong,
If H. A. Barnes,
Andrew E. Berry,
A. Bignell,
S. C. Sala,
Jacqueline Chrast,
...
Fiona Cunningham,
T. Domenico,
S. Donaldson,
Ian T. Fiddes,
C. García-Girón,
J. Gonzalez,
Tiago Grego,
Matthew Hardy,
Thibaut Hourlier,
T. Hunt,
Osagie G. Izuogu,
Julien Lagarde,
Fergal J. Martin,
Laura Martínez,
Shamika Mohanan,
Paul Muir,
Fábio C. P. Navarro,
Anne Parker,
Baikang Pei,
F. Pozo,
Magali Ruffier,
Bianca M. Schmitt,
Eloise Stapleton,
M. Suner,
Irina Sycheva,
Barbara Uszczynska-Ratajczak,
Jinrui Xu,
Andrew D. Yates,
D. Zerbino,
Yan Zhang,
Bronwen L. Aken,
J. Choudhary,
M. Gerstein,
R. Guigó,
T. Hubbard,
Manolis Kellis,
B. Paten,
A. Reymond,
M. Tress,
Paul Flicek
|
11 |
2018 |
11
🐜
|
|
🐬
|
PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions
Michael F. Lin,
Irwin Jungreis,
Manolis Kellis
|
9 |
2011 |
9
🐬
|
|
🐜
|
GENCODE 2021
56 auth.
A. Frankish,
M. Diekhans,
Irwin Jungreis,
Julien Lagarde,
J. Loveland,
Jonathan M. Mudge,
Cristina Sisu,
James C. Wright,
J. Armstrong,
If H. A. Barnes,
Andrew E. Berry,
A. Bignell,
C. Boix,
S. Carbonell Sala,
Fiona Cunningham,
...
Tomás Di Domenico,
S. Donaldson,
Ian T. Fiddes,
C. García Girón,
J. Gonzalez,
Tiago Grego,
Matthew Hardy,
Thibaut Hourlier,
K. Howe,
T. Hunt,
Osagie G. Izuogu,
Rory Johnson,
Fergal J. Martin,
Laura Martínez,
Shamika Mohanan,
Paul Muir,
Fábio C. P. Navarro,
Anne Parker,
Baikang Pei,
F. Pozo,
Ferriol Calvet Riera,
Magali Ruffier,
Bianca M. Schmitt,
Eloise Stapleton,
M. Suner,
Irina Sycheva,
Barbara Uszczynska-Ratajczak,
Maxim Y Wolf,
Jinuri Xu,
Yucheng T. Yang,
Andrew D. Yates,
D. Zerbino,
Yan Zhang,
J. Choudhary,
M. Gerstein,
R. Guigó,
T. Hubbard,
Manolis Kellis,
B. Paten,
M. Tress,
Paul Flicek
|
9 |
2020 |
9
🐜
|
|
🐜
|
Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes
120 auth.
D. Neafsey,
Robert M. Waterhouse,
M. Abai,
S. Aganezov,
M. Alekseyev,
James E. Allen,
James C. Amon,
B. Arcà,
Peter Arensburger,
G. Artemov,
Lauren A. Assour,
H. Basseri,
A. Berlin,
B. Birren,
S. Blandin,
...
Andrew I. Brockman,
T. Burkot,
A. Burt,
C. Chan,
C. Chauve,
J. Chiu,
Mikkel B. Christensen,
C. Costantini,
Victoria L M Davidson,
E. Deligianni,
T. Dottorini,
Vicky Dritsou,
S. Gabriel,
W. Guelbéogo,
A. B. Hall,
Mira V. Han,
T. Hlaing,
D. Hughes,
Adam M. Jenkins,
Xiaofang Jiang,
Irwin Jungreis,
E. Kakani,
M. Kamali,
P. Kemppainen,
R. Kennedy,
I. Kirmitzoglou,
L. Koekemoer,
Njoroge Laban,
Nicholas Langridge,
M. Lawniczak,
Manolis Lirakis,
N. Lobo,
E. Lowy,
R. MacCallum,
Chunhong Mao,
G. Maslen,
C. Mbogo,
J. McCarthy,
K. Michel,
Sara N. Mitchell,
W. Moore,
K. Murphy,
A. N. Naumenko,
T. Nolan,
E. Novoa,
S. O’Loughlin,
C. Oringanje,
M. Oshaghi,
Nazzy Pakpour,
P. Papathanos,
Ashley Peery,
M. Povelones,
A. Prakash,
David P. Price,
Ashok Rajaraman,
L. Reimer,
D. Rinker,
A. Rokas,
T. Russell,
N. Sagnon,
M. Sharakhova,
Terrance Shea,
Felipe A. Simão,
F. Simard,
M. Slotman,
P. Somboon,
V. Stegniy,
C. Struchiner,
Gregg W. C. Thomas,
M. Tojo,
P. Topalis,
J. Tubío,
M. Unger,
J. Vontas,
C. Walton,
C. Wilding,
J. H. Willis,
Yi-Chieh Wu,
G. Yan,
E. Zdobnov,
Xiaofan Zhou,
F. Catteruccia,
G. Christophides,
F. Collins,
R. Cornman,
A. Crisanti,
M. Donnelly,
S. Emrich,
M. Fontaine,
W. Gelbart,
Matthew W. Hahn,
I. Hansen,
P. Howell,
F. Kafatos,
Manolis Kellis,
D. Lawson,
C. Louis,
S. Luckhart,
M. Muskavitch,
J. Ribeiro,
M. Riehle,
I. Sharakhov,
Z. Tu,
L. Zwiebel,
N. Besansky
|
9 |
2014 |
9
🐜
|
|
🐜
|
Identification of functional elements and regulatory circuits by Drosophila modENCODE
109 auth.
Sushmita Roy,
J. Ernst,
P. Kharchenko,
Pouya Kheradpour,
N. Negre,
M. Eaton,
J. Landolin,
Christopher,
A. Bristow,
Lijia Ma,
Michael F. Lin,
Stefan Washietl,
Bradley I. Arshinoff,
F. Ay,
Patrick E. Meyer,
...
N. Robine,
N. Washington,
Luisa Di,
Stefano,
Eugene Berezikov,
Christopher D. Brown,
Rogerio Candeias,
W. Joseph,
Carlson,
A. Carr,
Irwin Jungreis,
D. Marbach,
Rachel S. G. Sealfon,
Michael,
Y. Tolstorukov,
S. Will,
A. A. Alekseyenko,
C. Artieri,
W. Benjamin,
Booth,
Angela N. Brooks,
Q. Dai,
Carrie A. Davis,
M. Duff,
Xin Feng,
A. Gorchakov,
Tingting Gu,
J. Henikoff,
P. Kapranov,
Renhua Li,
Heather K Macalpine,
J. Malone,
Aki Minoda,
Jared T. Nordman,
K. Okamura,
M. Perry,
S. Powell,
N. C. Riddle,
Akiko Sakai,
A. Samsonova,
Jeremy E. Sandler,
Y. Schwartz,
Noa Sher,
Rebecca Spokony,
David Sturgill,
Marijke,
V. Baren,
K. Wan,
Li Yang,
Charles Yu,
E. Feingold,
P. Good,
Mark,
Guyer,
R. Lowdon,
K. Ahmad,
J. Andrews,
Bonnie Berger,
E. Steven,
Brenner,
M. Brent,
L. Cherbas,
S. Elgin,
R. Thomas,
Gingeras,
R. Grossman,
R. Hoskins,
T. Kaufman,
W. Kent,
M. Kuroda,
T. Orr-Weaver,
N. Perrimon,
V. Pirrotta,
W. James,
Posakony,
Bing Ren,
S. Russell,
P. Cherbas,
B. Graveley,
Suzanna,
Lewis,
G. Micklem,
B. Oliver,
P. Park,
S. Celniker,
Steven,
Henikoff,
G. Karpen,
E. Lai,
D. MacAlpine,
D. Lincoln,
Stein,
Kevin P. White,
Manolis Kellis
|
8 |
2011 |
8
🐜
|
|
🐜
|
Evolution of enhanced innate immune evasion by SARS-CoV-2
43 auth.
Lucy G. Thorne,
Mehdi Bouhaddou,
Ann-Kathrin Reuschl,
L. Zuliani-Alvarez,
Benjamin J. Polacco,
A. Pelin,
J. Batra,
M. Whelan,
M. Hosmillo,
A. Fossati,
Roberta Ragazzini,
Irwin Jungreis,
Manisha Ummadi,
Ajda Rojc,
Jane Turner,
...
Marie L. Bischof,
K. Obernier,
Hannes Braberg,
Margaret Soucheray,
Alicia L. Richards,
Kuei-Ho Chen,
Bhavya Harjai,
D. Memon,
J. Hiatt,
R. Rosales,
B. McGovern,
A. Jahun,
Jacqueline M. Fabius,
K. White,
I. Goodfellow,
Yasuyuki Takeuchi,
P. Bonfanti,
K. Shokat,
N. Jura,
K. Verba,
M. Noursadeghi,
P. Beltrão,
Manolis Kellis,
D. Swaney,
A. García-Sastre,
C. Jolly,
G. Towers,
N. Krogan
|
8 |
2021 |
8
🐜
|
|
🐜
|
Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone
86 auth.
Daniel J. Park,
G. Dudas,
S. Wohl,
A. Goba,
S. Whitmer,
K. Andersen,
Rachel S. G. Sealfon,
J. Ladner,
Jeffrey R. Kugelman,
C. Matranga,
S. Winnicki,
J. Qu,
Stephen Gire,
A. Gladden-Young,
S. Jalloh,
...
Dolo Nosamiefan,
N. Yozwiak,
L. Moses,
Pan‐pan Jiang,
Aaron E. Lin,
S. Schaffner,
B. Bird,
J. Towner,
Mambu Mamoh,
Michael A Gbakie,
L. Kanneh,
D. Kargbo,
J. L. Massally,
F. Kamara,
Edwin Konuwa,
J. Sellu,
A. Jalloh,
I. Mustapha,
M. Foday,
Mohamed S Yillah,
B. Erickson,
Tara K Sealy,
D. Blau,
C. Paddock,
A. Brault,
B. Amman,
Jane Basile,
S. Bearden,
J. Belser,
É. Bergeron,
S. Campbell,
A. Chakrabarti,
K. Dodd,
M. Flint,
Aridth Gibbons,
C. Goodman,
J. Klena,
L. McMullan,
Laura Morgan,
B. Russell,
J. Salzer,
Angela J. Sanchez,
David Wang,
Irwin Jungreis,
C. Tomkins-Tinch,
Andrey Kislyuk,
Michael F. Lin,
S. Chapman,
B. MacInnis,
Ashley Matthews,
James Bochicchio,
L. Hensley,
J. Kuhn,
C. Nusbaum,
J. Schieffelin,
B. Birren,
Mark A. Forget,
S. Nichol,
G. Palacios,
D. Ndiaye,
C. Happi,
S. Gevao,
Mohamed A. Vandi,
B. Kargbo,
E. Holmes,
T. Bedford,
A. Gnirke,
U. Ströher,
A. Rambaut,
R. Garry,
Pardis C Sabeti
|
8 |
2015 |
8
🐜
|
|
🐜
|
Genomic RNA Elements Drive Phase Separation of the SARS-CoV-2 Nucleocapsid
17 auth.
Christiane Iserman,
Christine A. Roden,
M. Boerneke,
Rachel S. G. Sealfon,
Grace A. McLaughlin,
Irwin Jungreis,
Ethan J. Fritch,
Yixuan J. Hou,
J. Ekena,
Chase A. Weidmann,
...
Chandra L. Theesfeld,
Manolis Kellis,
O. Troyanskaya,
R. Baric,
T. Sheahan,
K. Weeks,
A. Gladfelter
|
8 |
2020 |
8
🐜
|
|
🦁
|
Evidence of abundant stop codon readthrough in Drosophila and other metazoa.
8 auth.
Irwin Jungreis,
Michael F. Lin,
Rebecca Spokony,
C. Chan,
N. Negre,
Alec Victorsen,
...
K. White,
Manolis Kellis
|
7 |
2011 |
7
🦁
|
|
🐜
|
Evidence of efficient stop codon readthrough in four mammalian genes
8 auth.
G. Loughran,
M. Chou,
I. Ivanov,
Irwin Jungreis,
Manolis Kellis,
Anmol M. Kiran,
...
P. Baranov,
J. F. Atkins
|
7 |
2014 |
7
🐜
|
|
🐜
|
GENCODE: reference annotation for the human and mouse genomes in 2023
62 auth.
A. Frankish,
S. C. Sala,
M. Diekhans,
Irwin Jungreis,
J. Loveland,
Jonathan M. Mudge,
Cristina Sisu,
James C. Wright,
Carme Arnan,
If H. A. Barnes,
Abhimanyu Banerjee,
Ruth Bennett,
Andrew E. Berry,
A. Bignell,
C. Boix,
...
Ferriol Calvet Riera,
Daniel Cerdán-Vélez,
Fiona Cunningham,
C. Davidson,
S. Donaldson,
Cagatay Dursun,
Reham Fatima,
Stefano Giorgetti,
C. García-Girón,
J. Gonzalez,
Matthew Hardy,
Peter W. Harrison,
Thibaut Hourlier,
Zoe Hollis,
T. Hunt,
Benjamin T. James,
Yunzhe Jiang,
Rory Johnson,
M. Kay,
Julien Lagarde,
Fergal J. Martin,
Laura Martínez Gómez,
Surag Nair,
Pengyu Ni,
F. Pozo,
Vivekanandan Ramalingam,
Magali Ruffier,
Bianca M. Schmitt,
J. Schreiber,
E. Steed,
M. Suner,
Dulika Sumathipala,
Irina Sycheva,
Barbara Uszczynska-Ratajczak,
Elizabeth Wass,
Yucheng T. Yang,
Andrew D. Yates,
Zahoor Zafrulla,
J. Choudhary,
M. Gerstein,
R. Guigó,
Tim J. P. Hubbard,
M. Kellis,
A. Kundaje,
B. Paten,
M. Tress,
Paul Flicek
|
7 |
2022 |
7
🐜
|
|
🐜
|
Unannotated proteins expand the MHC-I-restricted immunopeptidome in cancer
28 auth.
Tamara Ouspenskaia,
Travis Law,
K. Clauser,
Susan Klaeger,
Siranush Sarkizova,
F. Aguet,
Elena Christian,
Binyamin A. Knisbacher,
Phuong M. Le,
Christina R. Hartigan,
Hasmik Keshishian,
Annie Apffel,
G. Oliveira,
Wandi Zhang,
Sarah Chen,
...
Y. Chow,
Zhe Ji,
Irwin Jungreis,
S. Shukla,
S. Justesen,
P. Bachireddy,
M. Kellis,
G. Getz,
N. Hacohen,
D. Keskin,
Steve Carr,
Catherine J. Wu,
A. Regev
|
7 |
2021 |
7
🐜
|
