CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
J. Thompson,
D. Higgins,
T. Gibson
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16 |
1994 |
16
1994
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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
7 auth.
S. Altschul,
Thomas L. Madden,
A. Schäffer,
Jinghui Zhang,
Zheng Zhang,
W. Miller,
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D. Lipman
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15 |
1997 |
15
1997
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MUSCLE: multiple sequence alignment with high accuracy and high throughput.
Robert C. Edgar
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15 |
2004 |
15
2004
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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.
J. Thompson,
T. Gibson,
F. Plewniak,
F. Jeanmougin,
D. Higgins
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15 |
1997 |
15
1997
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A new mathematical model for relative quantification in real-time RT-PCR.
M. Pfaffl
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14 |
2001 |
14
2001
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limma powers differential expression analyses for RNA-sequencing and microarray studies
7 auth.
Matthew E. Ritchie,
B. Phipson,
Diabetes-Ling Wu,
Yifang Hu,
C. Law,
Wei Shi,
...
G. Smyth
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14 |
2015 |
14
2015
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A simple salting out procedure for extracting DNA from human nucleated cells.
Shirley A. Miller,
D. Dykes,
H. Polesky
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14 |
1988 |
14
1988
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DNA polymorphisms amplified by arbitrary primers are useful as genetic markers.
7 auth.
John G. K. Williams,
Anne,
R. Kubelik,
Kenneth,
J. Livak,
J. Rafalski,
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S. Tingey
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13 |
1990 |
13
1990
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A rapid alkaline extraction procedure for screening recombinant plasmid DNA.
H. Birnboim,
J. Doly
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13 |
1979 |
13
1979
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MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.
K. Katoh,
K. Misawa,
K. Kuma,
T. Miyata
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13 |
2002 |
13
2002
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Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
Da Wei Huang,
Brad T. Sherman,
R. Lempicki
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13 |
2008 |
13
2008
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AFLP: a new technique for DNA fingerprinting.
11 auth.
P. Vos,
R. Hogers,
M. Bleeker,
M. Reijans,
Theo van de Lee,
Miranda Hornes,
...
A. Friters,
J. Pot,
J. Paleman,
M. Kuiper,
M. Zabeau
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13 |
1995 |
13
1995
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ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
Kai Wang,
Mingyao Li,
H. Hakonarson
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13 |
2010 |
13
2010
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Rapid isolation of high molecular weight plant DNA.
M. Murray,
W. F. Thompson
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13 |
1980 |
13
1980
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Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei.
J. Dignam,
R. Lebovitz,
R. Roeder
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13 |
1983 |
13
1983
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tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
T. Lowe,
S. Eddy
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13 |
1997 |
13
1997
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Primer3—new capabilities and interfaces
7 auth.
A. Untergasser,
I. Cutcutache,
Triinu Koressaar,
Jian Ye,
B. Faircloth,
M. Remm,
...
S. Rozen
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12 |
2012 |
12
2012
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Tandem repeats finder: a program to analyze DNA sequences.
Gary Benson
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12 |
1999 |
12
1999
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Loop-mediated isothermal amplification of DNA.
7 auth.
T. Notomi,
H. Okayama,
Harumi Otawara-shi Masubuchi,
Toshihiro Yonekawa,
Keiko Watanabe,
N. Amino,
...
T. Hase
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12 |
2000 |
12
2000
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ARB: a software environment for sequence data.
32 auth.
W. Ludwig,
O. Strunk,
Ralf Westram,
L. Richter,
H. Meier,
Yadhukumar,
Arno Buchner,
Tina Lai,
Susanne Steppi,
Gangolf Jobb,
Wolfram Förster,
Igor Brettske,
Stefan Gerber,
Anton W Ginhart,
Oliver Gross,
...
Silke Grumann,
Stefan Hermann,
R. Jost,
A. König,
T. Liß,
Ralph Lüssmann,
M. May,
Björn Nonhoff,
B. Reichel,
R. Strehlow,
A. Stamatakis,
Norbert Stuckmann,
Alexander Vilbig,
M. Lenke,
T. Ludwig,
A. Bode,
K. Schleifer
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12 |
2004 |
12
2004
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Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
7 auth.
A. Klindworth,
E. Pruesse,
Timmy Schweer,
J. Peplies,
Christian Quast,
M. Horn,
...
F. Glöckner
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12 |
2012 |
12
2012
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