A. Stamatakis's Profile

Role	Title	Level	Year	L/R
🦁	RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies A. Stamatakis	14	2014	14 🦁
🦁	RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models A. Stamatakis	13	2006	13 🦁
🦁	A rapid bootstrap algorithm for the RAxML Web servers. A. Stamatakis, Paul Hoover, J. Rougemont	12	2008	12 🦁
🐜	ARB: a software environment for sequence data. 32 auth. W. Ludwig, O. Strunk, Ralf Westram, L. Richter, H. Meier, Yadhukumar, Arno Buchner, Tina Lai, Susanne Steppi, Gangolf Jobb, Wolfram Förster, Igor Brettske, Stefan Gerber, Anton W Ginhart, Oliver Gross, ... Silke Grumann, Stefan Hermann, R. Jost, A. König, T. Liß, Ralph Lüssmann, M. May, Björn Nonhoff, B. Reichel, R. Strehlow, A. Stamatakis, Norbert Stuckmann, Alexander Vilbig, M. Lenke, T. Ludwig, A. Bode, K. Schleifer	12	2004	12 🐜
🐢	PEAR: a fast and accurate Illumina Paired-End reAd mergeR Jiajie Zhang, Kassian Kobert, T. Flouri, A. Stamatakis	11	2013	11 🐢
🐢	RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference Alexey M. Kozlov, D. Darriba, T. Flouri, Benoit Morel, A. Stamatakis	11	2018	11 🐢
🐢	A general species delimitation method with applications to phylogenetic placements Jiajie Zhang, P. Kapli, P. Pavlidis, A. Stamatakis	11	2013	11 🐢
🐜	Phylogenomics resolves the timing and pattern of insect evolution 100 auth. B. Misof, Shanlin Liu, K. Meusemann, R. Peters, A. Donath, C. Mayer, P. Frandsen, J. Ware, T. Flouri, R. Beutel, O. Niehuis, Malte Petersen, F. Izquierdo-Carrasco, T. Wappler, J. Rust, ... A. Aberer, U. Aspöck, H. Aspöck, D. Bartel, A. Blanke, S. Berger, Alexander Böhm, T. Buckley, B. Calcott, F. Friedrich, Makiko Fukui, M. Fujita, Carola Greve, P. Grobe, Shengchang Gu, Ying Huang, L. Jermiin, A. Kawahara, L. Krogmann, M. Kubiak, R. Lanfear, H. Letsch, Yiyuan Li, Zhenyu Li, Jiguang Li, Haorong Lu, R. Machida, Y. Mashimo, P. Kapli, D. Mckenna, Guanliang Meng, Yasutaka Nakagaki, J. Navarrete-Heredia, M. Ott, Yan Ou, G. Pass, L. Podsiadlowski, H. Pohl, B. V. von Reumont, Kai Schütte, Kaoru Sekiya, Shota Shimizu, A. Ślipiński, A. Stamatakis, Wenhui Song, Xu Su, N. Szucsich, Meihua Tan, Xuemei Tan, Min Tang, Jingbo Tang, G. Timelthaler, S. Tomizuka, Michelle Trautwein, X. Tong, Toshiki Uchifune, M. Walzl, B. Wiegmann, J. Wilbrandt, B. Wipfler, Thomas K. F. Wong, Qiong Wu, Gengxiong Wu, Yinlong Xie, Shenzhou Yang, Q. Yang, D. Yeates, K. Yoshizawa, Qing Zhang, Rui Zhang, Wenwei Zhang, Yunhui Zhang, J. Zhao, Chengran Zhou, Lili Zhou, Tanja Ziesmann, Shijie Zou, Yingrui Li, Xun Xu, Yong Zhang, Huanming Yang, Jian Wang, Jun Wang, K. Kjer, Xin Zhou	11	2014	11 🐜
🐜	Whole-genome analyses resolve early branches in the tree of life of modern birds 105 auth. E. Jarvis, S. Mirarab, A. Aberer, Bo Li, P. Houde, Cai Li, S. Ho, B. Faircloth, B. Nabholz, Jason T. Howard, Alexander Suh, Claudia C. Weber, R. D. da Fonseca, Jianwen Li, Fang Zhang, ... Hui Li, Long Zhou, Nitish Narula, Liang Liu, Ganeshkumar Ganapathy, B. Boussau, Md. Shamsuzzoha Bayzid, Volodymyr Zavidovych, Sankar Subramanian, T. Gabaldón, S. Capella-Gutiérrez, J. Huerta-Cepas, Bhanu Rekepalli, Kasper Munch, M. Schierup, B. Lindow, W. Warren, D. Ray, R. Green, M. Bruford, Xiangjiang Zhan, A. Dixon, Shengbin Li, Ning Li, Yinhua Huang, E. Derryberry, M. Bertelsen, F. Sheldon, R. T. Brumfield, C. Mello, P. Lovell, Morgan E. Wirthlin, M. Schneider, F. Prosdocimi, J. A. Samaniego, A. M. V. Velazquez, Alonzo Alfaro-Núñez, P. Campos, Bent Petersen, Thomas Sicheritz-Pontén, A. Pas, T. Bailey, P. Scofield, M. Bunce, D. Lambert, Qi Zhou, P. Perelman, A. Driskell, B. Shapiro, Zijun Xiong, Yongli Zeng, Shiping Liu, Zhenyu Li, Binghang Liu, Kui Wu, Jin Xiao, Xiong Yinqi, Qiu-hong Zheng, Yong Zhang, Huanming Yang, Jian Wang, Linnéa Smeds, F. Rheindt, M. Braun, J. Fjeldså, L. Orlando, F. Barker, K. Jønsson, W. Johnson, Klaus‐Peter Koepfli, S. O’Brien, D. Haussler, O. Ryder, C. Rahbek, E. Willerslev, G. Graves, T. Glenn, J. McCormack, D. Burt, H. Ellegren, P. Alström, S. Edwards, A. Stamatakis, D. Mindell, J. Cracraft, E. Braun, T. Warnow, Wang Jun, M. Gilbert, Guojie Zhang	10	2014	10 🐜
🦁	RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees A. Stamatakis, T. Ludwig, H. Meier	10	2005	10 🦁
🐬	ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models D. Darriba, D. Posada, Alexey M. Kozlov, A. Stamatakis, Benoit Morel, T. Flouri	10	2019	10 🐬
🐢	How Many Bootstrap Replicates Are Necessary? N. Pattengale, M. Alipour, O. Bininda-Emonds, Bernard M. E. Moret, A. Stamatakis	10	2009	10 🐢
🐜	Eleven grand challenges in single-cell data science 51 auth. David Lähnemann, Johannes Köster, E. Szczurek, Davis J. McCarthy, S. Hicks, M. Robinson, C. Vallejos, Kieran R. Campbell, N. Beerenwinkel, A. Mahfouz, Luca Pinello, P. Skums, A. Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, ... J. Baaijens, M. Balvert, B. D. Barbanson, A. Cappuccio, G. Corleone, B. Dutilh, M. Florescu, V. Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, S. Kiełbasa, J. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, B. Lelieveldt, I. Măndoiu, J. Marioni, T. Marschall, Felix Mölder, A. Niknejad, Lukasz Raczkowski, M. Reinders, J. Ridder, A. Saliba, A. Somarakis, O. Stegle, Fabian J Theis, Huan Yang, A. Zelikovsky, A. Mchardy, Benjamin J. Raphael, Sohrab P. Shah, A. Schönhuth	9	2020	9 🐜
🐜	Assessing the root of bilaterian animals with scalable phylogenomic methods 17 auth. A. Hejnol, Matthias Obst, A. Stamatakis, M. Ott, G. Rouse, G. Edgecombe, P. Martinez, J. Baguñá, X. Bailly, U. Jondelius, ... M. Wiens, W. Müller, E. Seaver, W. Wheeler, M. Martindale, Gonzalo Giribet, C. Dunn	9	2009	9 🐜
🐜	Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo 7 auth. P. Kapli, S. Lutteropp, Jiajie Zhang, Kassian Kobert, P. Pavlidis, A. Stamatakis, ... T. Flouri	9	2016	9 🐜
🐢	Selecting optimal partitioning schemes for phylogenomic datasets R. Lanfear, B. Calcott, D. Kainer, C. Mayer, A. Stamatakis	9	2014	9 🐢