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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
S. Capella-Gutiérrez,
José M. Silla-Martínez,
T. Gabaldón
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13 |
2009 |
13
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Whole-genome analyses resolve early branches in the tree of life of modern birds
105 auth.
E. Jarvis,
S. Mirarab,
A. Aberer,
Bo Li,
P. Houde,
Cai Li,
S. Ho,
B. Faircloth,
B. Nabholz,
Jason T. Howard,
Alexander Suh,
Claudia C. Weber,
R. D. da Fonseca,
Jianwen Li,
Fang Zhang,
...
Hui Li,
Long Zhou,
Nitish Narula,
Liang Liu,
Ganeshkumar Ganapathy,
B. Boussau,
Md. Shamsuzzoha Bayzid,
Volodymyr Zavidovych,
Sankar Subramanian,
T. Gabaldón,
S. Capella-Gutiérrez,
J. Huerta-Cepas,
Bhanu Rekepalli,
Kasper Munch,
M. Schierup,
B. Lindow,
W. Warren,
D. Ray,
R. Green,
M. Bruford,
Xiangjiang Zhan,
A. Dixon,
Shengbin Li,
Ning Li,
Yinhua Huang,
E. Derryberry,
M. Bertelsen,
F. Sheldon,
R. T. Brumfield,
C. Mello,
P. Lovell,
Morgan E. Wirthlin,
M. Schneider,
F. Prosdocimi,
J. A. Samaniego,
A. M. V. Velazquez,
Alonzo Alfaro-Núñez,
P. Campos,
Bent Petersen,
Thomas Sicheritz-Pontén,
A. Pas,
T. Bailey,
P. Scofield,
M. Bunce,
D. Lambert,
Qi Zhou,
P. Perelman,
A. Driskell,
B. Shapiro,
Zijun Xiong,
Yongli Zeng,
Shiping Liu,
Zhenyu Li,
Binghang Liu,
Kui Wu,
Jin Xiao,
Xiong Yinqi,
Qiu-hong Zheng,
Yong Zhang,
Huanming Yang,
Jian Wang,
Linnéa Smeds,
F. Rheindt,
M. Braun,
J. Fjeldså,
L. Orlando,
F. Barker,
K. Jønsson,
W. Johnson,
Klaus‐Peter Koepfli,
S. O’Brien,
D. Haussler,
O. Ryder,
C. Rahbek,
E. Willerslev,
G. Graves,
T. Glenn,
J. McCormack,
D. Burt,
H. Ellegren,
P. Alström,
S. Edwards,
A. Stamatakis,
D. Mindell,
J. Cracraft,
E. Braun,
T. Warnow,
Wang Jun,
M. Gilbert,
Guojie Zhang
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10 |
2014 |
10
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|
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The genome of melon (Cucumis melo L.)
35 auth.
J. Garcia-Mas,
A. Benjak,
W. Sanseverino,
Michael Bourgeois,
G. Mir,
V. González,
Elizabeth Hénaff,
F. Camara,
L. Cozzuto,
E. Lowy,
T. Alioto,
S. Capella-Gutiérrez,
J. Blanca,
J. Cañizares,
P. Ziarsolo,
...
D. Gonzalez-Ibeas,
Luis Rodríguez-Moreno,
M. Droege,
Lei Du,
M. Álvarez-Tejado,
B. Lorente-Galdos,
Marta Melé,
Luming Yang,
Y. Weng,
A. Navarro,
Tomàs Marquès-Bonet,
M. Aranda,
F. Nuez,
B. Picó,
T. Gabaldón,
G. Roma,
R. Guigó,
J. Casacuberta,
P. Arús,
P. Puigdomènech
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9 |
2012 |
9
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|
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The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)
19 auth.
J. C. Dohm,
A. Minoche,
Daniela Holtgräwe,
S. Capella-Gutiérrez,
F. Zakrzewski,
Hakim Tafer,
O. Rupp,
Thomas Rosleff Sörensen,
R. Stracke,
R. Reinhardt,
...
A. Goesmann,
T. Kraft,
B. Schulz,
P. Stadler,
T. Schmidt,
T. Gabaldón,
H. Lehrach,
B. Weisshaar,
H. Himmelbauer
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9 |
2013 |
9
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|
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Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida
58 auth.
J. Collén,
Betina M. Porcel,
W. Carré,
S. Ball,
C. Chaparro,
T. Tonon,
T. Barbeyron,
G. Michel,
B. Noel,
K. Valentin,
M. Eliáš,
F. Artiguenave,
A. Arun,
J. Aury,
J. F. Barbosa-Neto,
...
J. Bothwell,
F. Bouget,
L. Brillet,
F. Cabello-Hurtado,
S. Capella-Gutiérrez,
Bénédicte Charrier,
Lionel Cladière,
J. Cock,
Susana M. Coelho,
C. Colleoni,
M. Czjzek,
C. da Silva,
Ludovic Delage,
F. Denoeud,
P. Deschamps,
S. Dittami,
T. Gabaldón,
C. Gachon,
A. Groisillier,
Cécile Hervé,
K. Jabbari,
M. Katinka,
B. Kloareg,
Nathalie Kowalczyk,
K. Labadie,
C. Leblanc,
P. Lopez,
D. McLachlan,
L. Meslet-Cladière,
Ahmed Moustafa,
Zofia Nehr,
P. Nyvall Collén,
O. Panaud,
F. Partensky,
J. Poulain,
S. Rensing,
S. Rousvoal,
Gaelle Samson,
Aikaterini Symeonidi,
J. Weissenbach,
A. Zambounis,
P. Wincker,
C. Boyen
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8 |
2013 |
8
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|
🐜
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Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs
55 auth.
R. Green,
E. Braun,
J. Armstrong,
Dent Earl,
N. Nguyen,
G. Hickey,
Michael W. Vandewege,
John A St John,
S. Capella-Gutiérrez,
T. Castoe,
C. Kern,
M. Fujita,
J. Opazo,
J. Jurka,
K. Kojima,
...
Juan Caballero,
R. Hubley,
A. Smit,
Roy N Platt,
C. Lavoie,
Meganathan P. Ramakodi,
J. W. Finger,
Alexander Suh,
S. Isberg,
L. Miles,
A. Y. Chong,
Weerachai Jaratlerdsiri,
J. Gongora,
C. Moran,
A. Iriarte,
J. McCormack,
S. Burgess,
S. Edwards,
E. Lyons,
C. Williams,
M. Breen,
Jason T. Howard,
Cathy R. Gresham,
D. Peterson,
J. Schmitz,
D. Pollock,
D. Haussler,
E. Triplett,
Guojie Zhang,
Naoki Irie,
E. Jarvis,
C. Brochu,
C. Schmidt,
F. McCarthy,
B. Faircloth,
F. Hoffmann,
T. Glenn,
T. Gabaldón,
B. Paten,
D. Ray
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8 |
2014 |
8
🐜
|
|
🐜
|
The First Myriapod Genome Sequence Reveals Conservative Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritima
106 auth.
A. Chipman,
D. Ferrier,
C. Brena,
J. Qu,
D. Hughes,
Reinhard Schröder,
Montserrat Torres-Oliva,
Nadia Znassi,
Huaiyang Jiang,
F. C. Almeida,
C. Alonso,
Zivkos Apostolou,
Peshtewani K. Aqrawi,
W. Arthur,
J. Barna,
...
K. Blankenburg,
D. Brites,
S. Capella-Gutiérrez,
Marcus Coyle,
P. Dearden,
L. Du Pasquier,
E. Duncan,
D. Ebert,
Cornelius Eibner,
Galina A. Erikson,
P. Evans,
C. Extavour,
Liezl E. Francisco,
T. Gabaldón,
William J. Gillis,
Elizabeth A. Goodwin-Horn,
Jack E. Green,
S. Griffiths-Jones,
C. Grimmelikhuijzen,
S. Gubbala,
R. Guigó,
Yi Han,
F. Hauser,
P. Havlak,
L. Hayden,
Sophie Helbing,
M. Holder,
J. Hui,
Julia P. Hunn,
Vera S. Hunnekuhl,
L. Jackson,
Mehwish Javaid,
S. Jhangiani,
F. Jiggins,
T. Jones,
T. Kaiser,
D. Kalra,
N. Kenny,
V. Korchina,
C. Kovar,
F. Kraus,
F. Lapraz,
Sandy Lee,
Jie Lv,
Christigale Mandapat,
G. Manning,
M. Mariotti,
Robert Mata,
T. Mathew,
Tobias Neumann,
I. Newsham,
Dinh N. Ngo,
Maria Ninova,
Geoffrey Okwuonu,
Fiona Ongeri,
W. Palmer,
Shobha Patil,
Pedro Patraquim,
Christopher Pham,
ling-ling Pu,
Nicholas H. Putman,
C. Rabouille,
Olivia Mendivil Ramos,
Adelaide C. Rhodes,
Helen E. Robertson,
H. Robertson,
M. Ronshaugen,
J. Rozas,
Nehad I. Saada,
A. Sánchez‐Gracia,
S. Scherer,
A. Schurko,
Kenneth W. Siggens,
DeNard V. Simmons,
A. Stief,
Eckart Stolle,
M. Telford,
Kristin Tessmar-Raible,
Rebecca L. Thornton,
M. van der Zee,
A. von Haeseler,
J. M. Williams,
J. H. Willis,
Yuanqing Wu,
Xiaoyan Zou,
D. Lawson,
D. Muzny,
K. Worley,
R. Gibbs,
M. Akam,
S. Richards
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8 |
2014 |
8
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|
🐬
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PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome
J. Huerta-Cepas,
S. Capella-Gutiérrez,
Leszek P. Pryszcz,
M. Marcet-Houben,
T. Gabaldón
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7 |
2013 |
7
🐬
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|
🐜
|
Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing
12 auth.
Rubén Sánchez,
François Serra,
Joaquín Tárraga,
Ignacio Medina,
J. Carbonell,
Luis Pulido,
...
A. D. María,
S. Capella-Gutiérrez,
J. Huerta-Cepas,
T. Gabaldón,
J. Dopazo,
H. Dopazo
|
7 |
2011 |
7
🐜
|
|
🐢
|
Towards FAIR principles for research software
18 auth.
Anna-Lena Lamprecht,
L. García,
Mateusz Kuzak,
Carlos Martinez,
Ricardo Arcila,
Eva Martin Del Pico,
Victoria Dominguez Del Angel,
Stephanie van de Sandt,
J. Ison,
P. Martínez,
...
Peter McQuilton,
A. Valencia,
J. Harrow,
Fotis Psomopoulos,
J. Gelpi,
Neil Philippe Chue Hong,
C. Goble,
S. Capella-Gutiérrez
|
7 |
2020 |
7
🐢
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|
🦁
|
Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi
S. Capella-Gutiérrez,
M. Marcet-Houben,
T. Gabaldón
|
7 |
2012 |
7
🦁
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|
🐜
|
Standardized benchmarking in the quest for orthologs
42 auth.
A. Altenhoff,
B. Boeckmann,
S. Capella-Gutiérrez,
Daniel A. Dalquen,
Todd DeLuca,
K. Forslund,
J. Huerta-Cepas,
Benjamin Linard,
Leszek P. Pryszcz,
Fabian Schreiber,
Alan Wilter Sousa da Silva,
Damian Szklarczyk,
Clément-Marie Train,
P. Bork,
Odile Lecompte,
...
C. von Mering,
Ioannis Xenarios,
Kimmen Sjölander,
L. Jensen,
Matthieu Muffato,
A. Altenhoff,
B. Boeckmann,
S. Capella-Gutiérrez,
Todd DeLuca,
K. Forslund,
J. Huerta-Cepas,
Benjamin Linard,
Leszek P. Pryszcz,
Fabian Schreiber,
Alan Wilter Sousa da Silva,
Damian Szklarczyk,
Clément-Marie Train,
Odile Lecompte,
Ioannis Xenarios,
Kimmen Sjölander,
Matthieu Muffato,
Toni Gabaldón,
Erik L. L. Sonnhammer,
Christophe Dessimoz,
Toni Gabaldón,
Erik L. L. Sonnhammer,
Christophe Dessimoz
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7 |
2016 |
7
🐜
|
|
🐜
|
Standardized benchmarking in the quest for orthologs
42 auth.
A. Altenhoff,
B. Boeckmann,
S. Capella-Gutiérrez,
Daniel A. Dalquen,
Todd DeLuca,
K. Forslund,
J. Huerta-Cepas,
Benjamin Linard,
Leszek P. Pryszcz,
Fabian Schreiber,
Alan Wilter Sousa da Silva,
Damian Szklarczyk,
Clément-Marie Train,
P. Bork,
Odile Lecompte,
...
C. von Mering,
Ioannis Xenarios,
Kimmen Sjölander,
L. Jensen,
Matthieu Muffato,
A. Altenhoff,
B. Boeckmann,
S. Capella-Gutiérrez,
Todd DeLuca,
K. Forslund,
J. Huerta-Cepas,
Benjamin Linard,
Leszek P. Pryszcz,
Fabian Schreiber,
Alan Wilter Sousa da Silva,
Damian Szklarczyk,
Clément-Marie Train,
Odile Lecompte,
Ioannis Xenarios,
Kimmen Sjölander,
Matthieu Muffato,
Toni Gabaldón,
Erik L. L. Sonnhammer,
Christophe Dessimoz,
Toni Gabaldón,
Erik L. L. Sonnhammer,
Christophe Dessimoz
|
7 |
2016 |
7
🐜
|
