BetterScholar BetterScholar
8
Role
Title
Level Year L/R
🐜 Perspectives on ENCODE
501 auth. F. Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal, Bronwen L. Aken, Rizi Ai, J. Akiyama, O. A. Jammal, Henry Amrhein, S. Anderson, Gregory Andrews, I. Antoshechkin, K. Ardlie, J. Armstrong, ... Matthew Astley, Budhaditya Banerjee, Amira A. Barkal, If H. A. Barnes, I. Barozzi, D. Barrell, Gemma Barson, Daniel Bates, Ulugbek K. Baymuradov, C. Bazile, Michael A. Beer, Samantha P. Beik, M. Bender, Ruth Bennett, L. Bouvrette, Bradley E. Bernstein, Andrew E. Berry, A. Bhaskar, A. Bignell, S. Blue, D. Bodine, C. Boix, Nathan Boley, Tyler Borrman, Beatrice Borsari, A. Boyle, Laurel A. Brandsmeier, A. Breschi, E. Bresnick, Jason A. Brooks, Michael Buckley, C. Burge, Rachel Byron, Eileen W. Cahill, Lingling Cai, Lulu Cao, Mark Carty, R. Castanon, Andres Castillo, H. Chaib, Esther T. Chan, Daniel R. Chee, Sora Chee, Huaming Chen, Jia-Yu Chen, Songjie Chen, J. M. Cherry, S. Chhetri, J. Choudhary, Jacqueline Chrast, Dongjun Chung, Declan Clarke, Neal A. L. Cody, Candice J. Coppola, J. Coursen, A. D'Ippolito, S. Dalton, Cassidy Danyko, C. Davidson, J. Dávila-Velderrain, Carrie A. Davis, J. Dekker, A. Deran, Gilberto Desalvo, Gloria Despacio-Reyes, Colin N. Dewey, D. Dickel, Morgan Diegel, M. Diekhans, V. Dileep, Bo Ding, S. Djebali, A. Dobin, Daniel Dominguez, S. Donaldson, J. Drenkow, T. Dreszer, Y. Drier, M. Duff, D. Dunn, Catharine L. Eastman, J. Ecker, Matthew D. Edwards, Nicole C. El-Ali, Shaimae I. Elhajjajy, Keri Elkins, A. Emili, C. Epstein, Rachel C. Evans, Iakes Ezkurdia, K. Fan, P. Farnham, Nina P. Farrell, E. Feingold, Anne-Maud Ferreira, Katherine I. Fisher-Aylor, Stephen Fitzgerald, Paul Flicek, Chuan-Sheng Foo, K. Fortier, A. Frankish, Peter Freese, Shaliu Fu, Xiang-Dong Fu, Yu Fu, Yoko Fukuda-Yuzawa, M. Fulciniti, Alister P. W. Funnell, I. Gabdank, Timur Galeev, M. Gao, C. G. Girón, Tyler H. Garvin, C. Gelboin-Burkhart, G. Georgolopoulos, M. Gerstein, B. Giardine, D. Gifford, D. Gilbert, Daniel A. Gilchrist, Shawn M. Gillespie, T. Gingeras, Peng Gong, Alvaro J. González, J. Gonzalez, P. Good, A. Goren, David U. Gorkin, B. Graveley, Michael Gray, J. Greenblatt, Ed Griffiths, M. Groudine, Fabian Grubert, Mengting Gu, R. Guigó, Hongbo Guo, Gamze Gursoy, M. Gutierrez-Arcelus, J. Halow, R. Hardison, Matthew Hardy, M. Hariharan, A. Harmanci, Anne N. Harrington, J. Harrow, Tatsunori B. Hashimoto, R. Hasz, Meital Hatan, E. Haugen, J. Hayes, Peng He, Yupeng He, Nastaran Heidari, David Hendrickson, Elisabeth F. Heuston, J. Hilton, B. Hitz, Abigail Hochman, Cory Holgren, Lei Hou, Shuyu Hou, Y. Hsiao, Shan-Chun Hsu, Hui Huang, T. Hubbard, Jack Huey, Timothy R. Hughes, T. Hunt, S. Ibarrientos, Robbyn Issner, M. Iwata, Osagie G. Izuogu, T. Jaakkola, Nader Jameel, Camden Jansen, Lixia Jiang, Peng Jiang, Audra K. Johnson, Rory Johnson, Irwin Jungreis, Madhura Kadaba, Maya Kasowski, M. Kasparian, Momoe Kato, R. Kaul, T. Kawli, M. Kay, Judy C. Keen, S. Keleş, C. Keller, D. Kelley, Manolis Kellis, Pouya Kheradpour, Daniel S. Kim, Anthony Kirilusha, R. Klein, B. Knoechel, Samantha Kuan, M. Kulik, Sushant Kumar, A. Kundaje, T. Kutyavin, Julien Lagarde, B. Lajoie, Nicole J. Lambert, John E Lazar, Ah Young Lee, Donghoon Lee, Elizabeth Lee, Jin-Wook Lee, Kristen Lee, C. Leslie, Shawn E. Levy, Bin Li, Hai-Ri Li, Nan Li, Shantao Li, Xiangrui Li, Yining Li, Jin Lian, Maxwell W. Libbrecht, Shin Lin, Y. Lin, Dianbo Liu, Jason Liu, Peng Liu, Tingting Liu, X. Liu, Yaping Liu, Maria Long, S. Lou, J. Loveland, Aiping Lu, Yuheng Lu, Eric Lécuyer, Lijia Ma, M. Mackiewicz, B. Mannion, M. Mannstadt, Deepa Manthravadi, G. Marinov, Fergal J. Martin, E. Mattei, Kenneth McCue, Megan McEown, G. McVicker, Sarah K. Meadows, A. Meissner, E. Mendenhall, C. L. Messer, W. Meuleman, Clifford A. Meyer, Steve Miller, Matthew G. Milton, Tejaswini Mishra, Dianna E. Moore, H. M. Moore, Samuel H. Moore, Jennifer R. Moran, A. Mortazavi, Jonathan M. Mudge, N. Munshi, Rabi Murad, R. Myers, V. Nandakumar, Preetha Nandi, A. Narasimha, Aditi K. Narayanan, H. Naughton, Fábio C. P. Navarro, P. Navas, Jurijs Nazarovs, Jemma Nelson, Shane J. Neph, Fidencio J. Neri, Joseph R. Nery, Amy R. Nesmith, J. S. Newberry, Kimberly M. Newberry, Vu Ngo, R. Nguyen, Tung Nguyen, Andrew Nishida, W. S. Noble, Catherine S. Novak, E. Novoa, Briana Nuñez, C. W. O'Donnell, S. Olson, Kathrina C. Onate, Ericka Otterman, Hakan Ozadam, Michael Pagan, T. Palden, X. Pan, Yongjin P. Park, E. Partridge, B. Paten, Florencia Pauli-Behn, M. Pazin, Baikang Pei, L. Pennacchio, Alexander R. Perez, Emily Perry, D. Pervouchine, Nishigandha Phalke, Quan T. Pham, D. H. Phanstiel, I. Plajzer-Frick, G. Pratt, H. Pratt, S. Preissl, J. Pritchard, Y. Pritykin, Michael J. Purcaro, Qian Qin, Giovanni Quinones-Valdez, Ines Rabano, Ernest Radovani, Anil Raj, N. Rajagopal, Oren Ram, L. Ramírez, Ricardo N. Ramirez, D. Rausch, S. Raychaudhuri, Joseph Raymond, Rozita Razavi, Timothy E. Reddy, Thomas M. Reimonn, Bing Ren, A. Reymond, Alex P. Reynolds, S. Rhie, Johannes Rinn, Miguel Rivera, J. Rivera-Mulia, Brian S. Roberts, J. Rodríguez, J. Rozowsky, Russell Ryan, Eric Rynes, Denis Salins, R. Sandstrom, Takayo Sasaki, S. Sathe, D. Savic, A. Scavelli, J. Scheiman, Christoph N. Schlaffner, J. Schloss, F. Schmitges, L. See, A. Sethi, M. Setty, A. Shafer, Shuo Shan, Eilon Sharon, Quan Shen, Yin Shen, R. Sherwood, Minyi Shi, Sunyoung Shin, N. Shoresh, Kyle T. Siebenthall, Cristina Sisu, T. Slifer, C. A. Sloan, Anna M. Smith, V. Snetkova, Michael P. Snyder, D. Spacek, Sharanya Srinivasan, R. Srivas, G. Stamatoyannopoulos, J. Stamatoyannopoulos, Rebecca Stanton, D. Steffan, Sandra Stehling-Sun, J. Strattan, Amanda Su, B. Sundararaman, M. Suner, Tahin Syed, Matt Szynkarek, Forrest Tanaka, D. Tenen, Mingxiang Teng, Jeffrey A. Thomas, David E. Toffey, M. Tress, Diane Trout, G. Trynka, J. Tsuji, S. Upchurch, Oana Ursu, Barbara Uszczynska-Ratajczak, Mia C. Uziel, A. Valencia, B. V. Biber, A. van der Velde, Eric L. Van Nostrand, Yekaterina Vaydylevich, Jesús Vázquez, Alec Victorsen, J. Vielmetter, J. Vierstra, A. Visel, A. Vlasova, Christopher M. Vockley, S. Volpi, Shinny Vong, Hao Wang, Mengchi Wang, Qin Wang, Ruth Wang, Tao Wang, Wen Wang, Xiao-feng Wang, Yanli Wang, N. Watson, Xintao Wei, Zhijie Wei, Hendrik Weisser, S. Weissman, Rene Welch, R. Welikson, Z. Weng, H. Westra, J. Whitaker, Collin G. White, Kevin P. White, Andre Wildberg, B. Williams, D. Wine, Heather Witt, B. Wold, Maxim Y Wolf, J. Wright, Rui Xiao, Xinshu Xiao, Jie Xu, Jinrui Xu, Koon-Kiu Yan, Yongqi Yan, Hongbo Yang, Xinqiong Yang, Yi-Wen Yang, G. Yardımcı, Brian A. Yee, Gene W. Yeo, Taylor Young, Tianxiong Yu, Feng Yue, C. Zaleski, C. Zang, Haoyang Zeng, Weihua Zeng, D. Zerbino, J. Zhai, L. Zhan, Y. Zhan, Bo Zhang, Jialing Zhang, Jing Zhang, Kaijie Zhang, Lijun Zhang, Peng Zhang, Qi Zhang, Xiao-ou Zhang, Yanxiao Zhang, Zhizhuo Zhang, Yuan Zhao, Ye Zheng, Guoqing Zhong, Xiao-Qiao Zhou, Yun Zhu, Jared Zimmerman, Michael P. Snyder, Bing Ren, R. Hardison, J. M. Cherry, Bradley E. Bernstein, E. Mendenhall, Paul Flicek
6 2020
6
🐜
🐜 Single-nucleotide human disease mutation inactivates a blood-regenerative GATA2 enhancer
13 auth. A. Soukup, Ye Zheng, Charu Mehta, Jun Wu, P. Liu, Miao Cao, I. Hofmann, Yun Zhou, Jing Zhang, Kirby D. Johnson, ... Kyunghee Choi, S. Keleş, E. Bresnick
5 2019
5
🐜
🐜 GATA/Heme Multi-omics Reveals a Trace Metal-Dependent Cellular Differentiation Mechanism.
14 auth. N. Tanimura, Ruiqi Liao, G. Wilson, Matthew R. Dent, Miao Cao, J. Burstyn, P. Hematti, Xin Liu, Yuannyu Zhang, Ye Zheng, ... S. Keleş, Jian Xu, J. Coon, E. Bresnick
5 2018
5
🐜
🦁 Normalization and de-noising of single-cell Hi-C data with BandNorm and scVI-3D
Ye Zheng, Siqi Shen, S. Keleş
4 2022
4
🦁
🐜 Discovering How Heme Controls Genome Function Through Heme-omics.
13 auth. Ruiqi Liao, Ye Zheng, Xin Liu, Yuannyu Zhang, Gretchen L. Seim, N. Tanimura, G. Wilson, P. Hematti, J. Coon, Jing Fan, ... Jian Xu, S. Keleş, E. Bresnick
4 2020
4
🐜
🦁 Generative modeling of multi-mapping reads with mHi-C advances analysis of Hi-C studies
Ye Zheng, F. Ay, S. Keleş
4 2019
4
🦁
🐜 Transcriptome-wide transmission disequilibrium analysis identifies novel risk genes for autism spectrum disorder
13 auth. Kunling Huang, Yuchang Wu, Junha Shin, Ye Zheng, Alireza F. Siahpirani, Yupei Lin, Z. Ni, Jiawen Chen, Jing You, S. Keleş, ... Daifeng Wang, Sushmita Roy, Q. Lu
3 2019
3
🐜
🦁 CUT&Tag Data Processing and Analysis Tutorial v1
Ye Zheng, K. Ahmad, S. Henikoff
3 2020
3
🦁