|
🐜
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A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
11 auth.
Suhas S. P. Rao,
M. Huntley,
Neva C. Durand,
Elena K. Stamenova,
Ivan D. Bochkov,
James T. Robinson,
...
Adrian L. Sanborn,
Ido Machol,
Arina D. Omer,
E. Lander,
Erez Lieberman Aiden
|
12 |
2014 |
12
🐜
|
|
🐜
|
Cohesin Loss Eliminates All Loop Domains
22 auth.
Suhas S. P. Rao,
Su-Chen Huang,
B. G. S. Hilaire,
J. Engreitz,
Elizabeth M. Perez,
Kyong-Rim Kieffer-Kwon,
Adrian L. Sanborn,
Sarah E. Johnstone,
Gavin D. Bascom,
Ivan D. Bochkov,
...
Xingfan Huang,
M. Shamim,
Jaeweon Shin,
Douglass Turner,
Ziyi Ye,
Arina D. Omer,
James T. Robinson,
T. Schlick,
B. Bernstein,
R. Casellas,
E. Lander,
Erez Lieberman Aiden
|
10 |
2017 |
10
🐜
|
|
🐜
|
Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
17 auth.
Adrian L. Sanborn,
Suhas S. P. Rao,
Su-Chen Huang,
Neva C. Durand,
M. Huntley,
A. Jewett,
Ivan D. Bochkov,
D. Chinnappan,
Ashok Cutkosky,
Jian Li,
...
Kristopher P Geeting,
A. Gnirke,
Alexandre Melnikov,
Doug McKenna,
Elena K. Stamenova,
E. Lander,
Erez Lieberman Aiden
|
10 |
2015 |
10
🐜
|
|
🐜
|
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
11 auth.
Suhas S. P. Rao,
M. Huntley,
Neva C. Durand,
Elena K. Stamenova,
Ivan D. Bochkov,
James T. Robinson,
...
Adrian L. Sanborn,
Ido Machol,
Arina D. Omer,
E. Lander,
Erez Lieberman Aiden
|
9 |
2015 |
9
🐜
|
|
🐜
|
Large DNA Methylation Nadirs Anchor Chromatin Loops Maintaining Hematopoietic Stem Cell Identity.
21 auth.
Xiaotian Zhang,
M. Jeong,
Xingfan Huang,
X. Q. Wang,
Xinyu Wang,
Wanding Zhou,
M. Shamim,
Haley Gore,
Pamela Himadewi,
Yushuai Liu,
...
Ivan D. Bochkov,
Jaime M. Reyes,
Madison Doty,
Yung-Hsin Huang,
Haiyoung Jung,
Emily B. Heikamp,
A. P. Aiden,
Wei Li,
Jianzhong Su,
Erez Lieberman Aiden,
M. Goodell
|
6 |
2020 |
6
🐜
|
|
🐜
|
The ENCODE Uniform Analysis Pipelines
60 auth.
B. Hitz,
Jin-Wook Lee,
Otto Jolanki,
Meenakshi S. Kagda,
Keenan Graham,
Paul Sud,
I. Gabdank,
J. Seth Strattan,
C. A. Sloan,
T. Dreszer,
Laurence D. Rowe,
Nikhil R. Podduturi,
V. Malladi,
Esther T. Chan,
Jean M. Davidson,
...
Marcus Ho,
S. Miyasato,
Matt Simison,
Forrest Tanaka,
Yunhai Luo,
Ian Whaling,
Eurie L. Hong,
Brian T. Lee,
R. Sandstrom,
Eric Rynes,
Jemma Nelson,
Andrew Nishida,
A. Ingersoll,
Michael Buckley,
M. Frerker,
Daniel S. Kim,
Nathan Boley,
Diane Trout,
A. Dobin,
Sorena Rahmanian,
D. Wyman,
Gabriela Balderrama-Gutierrez,
Fairlie Reese,
Neva C. Durand,
O. Dudchenko,
D. Weisz,
Suhas S. P. Rao,
Alyssa Blackburn,
Dimos Gkountaroulis,
Mahdi Sadr,
M. Olshansky,
Yossi Eliaz,
D. Nguyen,
Ivan D. Bochkov,
M. Shamim,
Ragini Mahajan,
Erez Lieberman Aiden,
T. Gingeras,
S. Heath,
M. Hirst,
W. James Kent,
A. Kundaje,
A. Mortazavi,
B. Wold,
J. Cherry
|
5 |
2023 |
5
🐜
|
|
🐜
|
Cohesin loss eliminates all loop domains, leading to links among superenhancers and downregulation of nearby genes
16 auth.
Suhas S. P. Rao,
Su-Chen Huang,
Brian Glenn St Hilair,
J. Engreitz,
Elizabeth M. Perez,
Kyong-Rim Kieffer-Kwon,
Adrian L. Sanborn,
Sarah E. Johnstone,
Ivan D. Bochkov,
Xingfan Huang,
...
M. Shamim,
Arina D. Omer,
B. Bernstein,
R. Casellas,
E. Lander,
Erez Lieberman Aiden
|
4 |
2017 |
4
🐜
|
|
🐜
|
A Cell type-specific Class of Chromatin Loops Anchored at Large DNA Methylation Nadirs
13 auth.
M. Jeong,
Xingfan Huang,
Xiaotian Zhang,
Jianzhong Su,
M. Shamim,
Ivan D. Bochkov,
Jaime M. Reyes,
Haiyoung Jung,
Emily B. Heikamp,
A. P. Aiden,
...
Wei Li,
Erez Lieberman Aiden,
M. Goodell
|
3 |
2017 |
3
🐜
|
|
🐜
|
Limited Evidence for Parallel Evolution Among Desert-Adapted Peromyscus Deer Mice
8 auth.
J. P. Colella,
Anna Tigano,
O. Dudchenko,
Arina D. Omer,
Ruqayya Khan,
Ivan D. Bochkov,
...
Erez Lieberman Aiden,
M. MacManes
|
3 |
2020 |
3
🐜
|
|
🐜
|
The Hi-Culfite assay reveals relationships between chromatin contacts and DNA methylation state
11 auth.
Elena K. Stamenova,
Neva C. Durand,
O. Dudchenko,
M. Shamim,
Su-Chen Huang,
Yiqun Jiang,
...
Ivan D. Bochkov,
Suhas S. P. Rao,
E. Lander,
A. Gnirke,
Erez Lieberman Aiden
|
1 |
2018 |
1
🐜
|
|
🐜
|
Multiple evolutionary pathways to achieve thermal adaptation in small mammals
8 auth.
J. P. Colella,
Anna Tigano,
O. Dudchenko,
Arina D. Omer,
Ruqayya Khan,
Ivan D. Bochkov,
...
Erez Lieberman Aiden,
M. MacManes
|
0 |
2020 |
0
🐜
|
|
🐜
|
Crispr Engineering in CD34+ Progenitors Reveals Cis-Acting Regulatory Regions Mediating 3D Interactions and Stem Cell Fate Decisions
13 auth.
M. Jeong,
Yong Lei,
Ivan D. Bochkov,
M. Shamim,
A. Guzman,
Su-Chen Huang,
Olga Dudchenko,
Ido Machol,
Michael C. Gundry,
H. Mujahed,
...
S. Lehmann,
Erez Lieberman,
M. Goodell
|
0 |
2016 |
0
🐜
|
|
🐜
|
Large DNA Methylation Canyons Anchor Chromatin Loops Maintaining Hematopoietic Stem Cell Identity
13 auth.
M. Jeong,
X. Huang,
Xiaotian Zhang,
Jianzhong Su,
M. Shamim,
Ivan D. Bochkov,
Jaime M. Reyes,
Haiyoung Jung,
Emily B. Heikamp,
A. P. Aiden,
...
Wei Li,
Erez Lieberman Aiden,
M. Goodell
|
0 |
2018 |
0
🐜
|
