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Systematic phenotyping and characterization of the 5xFAD mouse model of Alzheimer’s disease
21 auth.
S. Forner,
S. Kawauchi,
Gabriela Balderrama-Gutierrez,
E. Kramár,
D. Matheos,
Jimmy Phan,
D. Javonillo,
Kristine M. Tran,
Edna E. Hingco,
Celia da Cunha,
...
Narges Rezaie,
J. Alcantara,
D. Baglietto-Vargas,
Camden Jansen,
Jon Neumann,
M. Wood,
G. MacGregor,
A. Mortazavi,
A. Tenner,
F. LaFerla,
K. Green
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8 |
2021 |
8
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|
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A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantification
16 auth.
D. Wyman,
Gabriela Balderrama-Gutierrez,
Fairlie Reese,
Shan Jiang,
Sorena Rahmanian,
S. Forner,
D. Matheos,
Weihua Zeng,
B. Williams,
Diane Trout,
...
W. England,
Shu-Hui Chu,
R. Spitale,
A. Tenner,
B. Wold,
A. Mortazavi
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6 |
2019 |
6
🐜
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|
🐜
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Generation of a humanized Aβ expressing mouse demonstrating aspects of Alzheimer’s disease-like pathology
35 auth.
D. Baglietto-Vargas,
S. Forner,
Lena Cai,
A. Martini,
Laura Trujillo-Estrada,
V. Swarup,
Marie Minh Thu Nguyen,
Kelly Do Huynh,
D. Javonillo,
Kristine M. Tran,
Jimmy Phan,
Shan Jiang,
E. Kramár,
Cristina Nuñez‐Diaz,
Gabriela Balderrama-Gutierrez,
...
Franklin Garcia,
Jessica E. Childs,
Carlos J. Rodriguez-Ortiz,
J. García-León,
M. Kitazawa,
M. Shahnawaz,
D. Matheos,
Xinyi Ma,
Celia da Cunha,
K. C. Walls,
Rahasson R. Ager,
C. Soto,
A. Gutiérrez,
I. Moreno-Gonzalez,
A. Mortazavi,
A. Tenner,
G. MacGregor,
M. Wood,
K. Green,
F. LaFerla
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6 |
2021 |
6
🐜
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|
🐜
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The ENCODE Uniform Analysis Pipelines
60 auth.
B. Hitz,
Jin-Wook Lee,
Otto Jolanki,
Meenakshi S. Kagda,
Keenan Graham,
Paul Sud,
I. Gabdank,
J. Seth Strattan,
C. A. Sloan,
T. Dreszer,
Laurence D. Rowe,
Nikhil R. Podduturi,
V. Malladi,
Esther T. Chan,
Jean M. Davidson,
...
Marcus Ho,
S. Miyasato,
Matt Simison,
Forrest Tanaka,
Yunhai Luo,
Ian Whaling,
Eurie L. Hong,
Brian T. Lee,
R. Sandstrom,
Eric Rynes,
Jemma Nelson,
Andrew Nishida,
A. Ingersoll,
Michael Buckley,
M. Frerker,
Daniel S. Kim,
Nathan Boley,
Diane Trout,
A. Dobin,
Sorena Rahmanian,
D. Wyman,
Gabriela Balderrama-Gutierrez,
Fairlie Reese,
Neva C. Durand,
O. Dudchenko,
D. Weisz,
Suhas S. P. Rao,
Alyssa Blackburn,
Dimos Gkountaroulis,
Mahdi Sadr,
M. Olshansky,
Yossi Eliaz,
D. Nguyen,
Ivan D. Bochkov,
M. Shamim,
Ragini Mahajan,
Erez Lieberman Aiden,
T. Gingeras,
S. Heath,
M. Hirst,
W. James Kent,
A. Kundaje,
A. Mortazavi,
B. Wold,
J. Cherry
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5 |
2023 |
5
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🐜
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The genome of Peromyscus leucopus, natural host for Lyme disease and other emerging infections
8 auth.
A. Long,
James G. Baldwin-Brown,
Yuan Tao,
Vanessa J. Cook,
Gabriela Balderrama-Gutierrez,
Russell B. Corbett-Detig,
...
A. Mortazavi,
A. Barbour
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5 |
2019 |
5
🐜
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🐜
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The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models
99 auth.
J. Rozowsky,
J. Drenkow,
Yucheng T. Yang,
Gamze Gursoy,
Timur Galeev,
Beatrice Borsari,
C. Epstein,
Kun Xiong,
Jinrui Xu,
Jiahao Gao,
K. Yu,
Ana Berthel,
Zhanlin Chen,
Fábio C. P. Navarro,
Jason Liu,
...
Maxwell Sun,
James C. Wright,
Justin Chang,
Christopher J. F. Cameron,
N. Shoresh,
Elizabeth Gaskell,
Jessika Adrian,
S. Aganezov,
Gabriela Balderrama-Gutierrez,
Samridhi Banskota,
Guillermo Barreto Corona,
Sora Chee,
S. Chhetri,
Gabriel Conte Cortez Martins,
Cassidy Danyko,
Carrie A. Davis,
Daniel Farid,
Nina P. Farrell,
I. Gabdank,
Yoel Gofin,
David U. Gorkin,
Mengting Gu,
Vivian C. Hecht,
B. Hitz,
Robbyn Issner,
Melanie Kirsche,
Xiangmeng Kong,
Bonita R Lam,
Shantao Li,
Bian Li,
Tianxiao Li,
Xiqi Li,
K. Lin,
Ruibang Luo,
M. Mackiewicz,
Jill E. Moore,
J. Mudge,
Nicholas C Nelson,
C. Nusbaum,
Ioann Popov,
H. Pratt,
Yunjiang Qiu,
Srividya Ramakrishnan,
J. Raymond,
L. Salichos,
A. Scavelli,
Jacob M. Schreiber,
F. Sedlazeck,
L. See,
Rachel M. Sherman,
Xu Shi,
Minyi Shi,
C. A. Sloan,
J. Strattan,
Zhenqi Tan,
Forrest Tanaka,
A. Vlasova,
Jun Wang,
Jonathan D. Werner,
B. Williams,
Min Xu,
Chengfei Yan,
Lu Yu,
C. Zaleski,
Jing Zhang,
J. Cherry,
E. Mendenhall,
William Stafford Noble,
Z. Weng,
M. Levine,
A. Dobin,
B. Wold,
A. Mortazavi,
B. Ren,
J. Gillis,
R. Myers,
M. Snyder,
J. Choudhary,
A. Milosavljevic,
M. Schatz,
R. Guigó,
B. Bernstein,
T. Gingeras,
M. Gerstein
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5 |
2022 |
5
🐜
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|
🐜
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Systematic Phenotyping and Characterization of the 3xTg-AD Mouse Model of Alzheimer’s Disease
21 auth.
S. Forner,
S. Kawauchi,
Gabriela Balderrama-Gutierrez,
E. Kramár,
D. Matheos,
Jimmy Phan,
D. Javonillo,
Kristine M. Tran,
Edna E. Hingco,
Celia da Cunha,
...
Narges Rezaie,
J. Alcantara,
D. Baglietto-Vargas,
Camden Jansen,
Jon Neumann,
M. Wood,
G. MacGregor,
A. Mortazavi,
A. Tenner,
F. LaFerla,
K. Green
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5 |
2021 |
5
🐜
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|
🐜
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Systematic assessment of long-read RNA-seq methods for transcript identification and quantification
83 auth.
Francisco J. Pardo-Palacios,
Dingjie Wang,
Fairlie Reese,
M. Diekhans,
Sílvia Carbonell-Sala,
B. Williams,
J. Loveland,
M. De María,
Matthew Adams,
Gabriela Balderrama-Gutierrez,
A. Behera,
J. Gonzalez,
T. Hunt,
Julien Lagarde,
Cindy E Liang,
...
Haoran Li,
M. J. Meade,
D. Amador,
A. Prjibelski,
I. Birol,
H. Bostan,
As Brooks,
M. H. Çelik,
Ying Chen,
Meihong Du,
Colette Felton,
Jonathan Göke,
Saber Hafezqorani,
R. Herwig,
H. Kawaji,
Joseph Lee,
Jian-liang Li,
M. Lienhard,
Alla Mikheenko,
Dennis Mulligan,
K. Nip,
M. Perțea,
Matthew E. Ritchie,
Andre Sim,
Alison D. Tang,
Y. Wan,
Changqing Wang,
Brandon Y Wong,
Chen Yang,
If H. A. Barnes,
Andrew E. Berry,
S. Capella,
N. Dhillon,
J. M. Fernandez-Gonzalez,
Luis Ferrández-Peral,
N. Garcia-Reyero,
Stefan M. M. Goetz,
C. Hernández-Ferrer,
L. Kondratova,
Tianyuan Liu,
Alessandra Martinez-Martin,
C. Menor,
Jorge Mestre-Tomás,
Jonathan M. Mudge,
Nedka G Panayotova,
Alejandro Paniagua,
Dmitry Repchevsky,
E. Rouchka,
Brandon Saint-John,
Enrique Sapena,
L. Sheynkman,
M. Smith,
M. Suner,
Hazuki Takahashi,
Ingrid Youngworth,
Piero Carninci,
N. Denslow,
R. Guigó,
Margaret E. Hunter,
Hagen U. Tilgner,
B. Wold,
Christopher Vollmers,
A. Frankish,
K. Au,
Gloria M. Sheynkman,
A. Mortazavi,
A. Conesa,
Angela N. Brooks
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5 |
2023 |
5
🐜
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|
🐜
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Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq
10 auth.
Elisabeth Rebboah,
Fairlie Reese,
K. Williams,
Gabriela Balderrama-Gutierrez,
Cassandra J. McGill,
Diane Trout,
...
I. Rodriguez,
H. Liang,
B. Wold,
A. Mortazavi
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5 |
2021 |
5
🐜
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