🐜
|
KBase: The United States Department of Energy Systems Biology Knowledgebase
80 auth.
A. Arkin,
R. Cottingham,
C. Henry,
N. Harris,
Rick L. Stevens,
S. Maslov,
Paramvir S. Dehal,
D. Ware,
Fernando Pérez,
S. Canon,
Michael W. Sneddon,
Matthew L. Henderson,
William J. Riehl,
Daniel Murphy-Olson,
Stephen Y Chan,
...
R. Kamimura,
Meghan Drake,
T. Brettin,
E. Glass,
D. Chivian,
D. Gunter,
D. Weston,
Benjamin H. Allen,
J. Baumohl,
A. Best,
Ben Bowen,
S. Brenner,
Christopher Bun,
J. Chandonia,
Jer-Ming Chia,
R. Colasanti,
Neal Conrad,
James J. Davis,
B. Davison,
M. DeJongh,
Scott Devoid,
Emily M. Dietrich,
I. Dubchak,
Janaka N. Edirisinghe,
Gang Fang,
José P. Faria,
Paul Frybarger,
Wolfgang Gerlach,
M. Gerstein,
A. Greiner,
James Gurtowski,
Holly L. Haun,
Fei He,
Rashmi Jain,
marcin p. joachimiak,
Kevin P. Keegan,
S. Kondo,
Vivek Kumar,
M. Land,
Folker Meyer,
M. Mills,
P. Novichkov,
Taeyun Oh,
G. Olsen,
R. Olson,
B. Parrello,
S. Pasternak,
Erik Pearson,
S. Poon,
Gavin A. Price,
Srividya Ramakrishnan,
P. Ranjan,
P. Ronald,
M. Schatz,
S. Seaver,
Maulik Shukla,
R. Sutormin,
M. Syed,
Jim Thomason,
N. Tintle,
Daifeng Wang,
Fangfang Xia,
H. Yoo,
Shinjae Yoo,
Dantong Yu
|
10 |
2018 |
10 🐜
|
🐜
|
A genomic catalog of Earth’s microbiomes
267 auth.
Stephen Nayfach,
S. Roux,
Rekha Seshadri,
Daniel W. Udwary,
N. Varghese,
Frederik Schulz,
Dongying Wu,
David Páez-Espino,
I. Chen,
Marcel Huntemann,
Krishna Palaniappan,
J. Ladau,
Supratim Mukherjee,
T. Reddy,
T. Nielsen,
...
Edward Kirton,
José P. Faria,
Janaka N. Edirisinghe,
C. Henry,
S. Jungbluth,
D. Chivian,
Paramvir S. Dehal,
E. Wood-Charlson,
A. Arkin,
S. Tringe,
A. Visel,
H. Abreu,
S. Acinas,
E. Allen,
M. Allen,
L. Alteio,
G. Andersen,
A. Anesio,
G. Attwood,
Viridiana Avila-Magaña,
Yacine Badis,
J. Bailey,
B. Baker,
P. Baldrian,
H. Barton,
D. Beck,
Eric D. Becraft,
H. Beller,
J. Beman,
R. Bernier-Latmani,
T. Berry,
Anthony D. Bertagnolli,
S. Bertilsson,
Jennifer M. Bhatnagar,
J. Bird,
Jeffrey L. Blanchard,
Sara E. Blumer-Schuette,
B. Bohannan,
M. Borton,
Allyson Brady,
S. Brawley,
J. Brodie,
Steven Brown,
Jennifer R. Brum,
A. Brune,
D. Bryant,
A. Buchan,
D. Buckley,
J. Buongiorno,
H. Cadillo-Quiroz,
S. Caffrey,
A. Campbell,
Barbara Campbell,
S. Carr,
J. Carroll,
S. Cary,
Anna M. Cates,
R. Cattolico,
R. Cavicchioli,
L. Chistoserdova,
Maureen L. Coleman,
P. Constant,
Jonathan M. Conway,
W. M. Mac Cormack,
S. Crowe,
B. Crump,
C. Currie,
R. Daly,
Kristen M. DeAngelis,
Vincent J. Denef,
S. Denman,
A. Desta,
H. Dionisi,
J. Dodsworth,
Nina Dombrowski,
Timothy Donohue,
Mark Dopson,
Timothy P. Driscoll,
P. Dunfield,
C. Dupont,
Katherine A. Dynarski,
V. Edgcomb,
E. Edwards,
M. Elshahed,
Israel Figueroa,
Beverly E. Flood,
Nathaniel W. Fortney,
Caroline S. Fortunato,
C. Francis,
C. Gachon,
S. Garcia,
M. C. Gazitúa,
T. Gentry,
L. Gerwick,
Javad Gharechahi,
P. Girguis,
J. Gladden,
M. Gradoville,
S. Grasby,
Kelly Gravuer,
C. Grettenberger,
R. Gruninger,
Jiarong Guo,
M. Habteselassie,
S. Hallam,
R. Hatzenpichler,
B. Hausmann,
T. Hazen,
B. Hedlund,
C. Henny,
L. Herfort,
Maria Hernandez,
Olivia S. Hershey,
M. Hess,
E. Hollister,
L. Hug,
D. Hunt,
J. Jansson,
J. Jarett,
V. Kadnikov,
C. Kelly,
R. Kelly,
W. Kelly,
C. Kerfeld,
Jefferey A Kimbrel,
J. Klassen,
K. Konstantinidis,
Laura L. Lee,
Wenjun Li,
Andrew J. Loder,
A. Loy,
M. Lozada,
B. MacGregor,
C. Magnabosco,
Aline Maria da Silva,
R. McKay,
K. McMahon,
C. McSweeney,
Mónica Medina,
Laura K. Meredith,
Jessica E. Mizzi,
T. Mock,
L. Momper,
M. Moran,
C. Morgan-Lang,
D. Moser,
G. Muyzer,
D. Myrold,
Maisie Nash,
C. Nesbø,
A. Neumann,
R. Neumann,
D. Noguera,
T. Northen,
J. Norton,
Brent Nowinski,
K. Nüsslein,
M. O’Malley,
R. Oliveira,
Valéria Maia de Oliveira,
T. Onstott,
J. Osvatic,
Ouyang Yang,
M. Pachiadaki,
J. Parnell,
L. Partida-Martínez,
K. Peay,
D. Pelletier,
Xuefeng Peng,
Michael Pester,
J. Pett‐Ridge,
Sari Peura,
P. Pjevac,
Alvaro M. Plominsky,
Anja Poehlein,
P. Pope,
N. Ravin,
M. Redmond,
Rebecca A. Reiss,
V. Rich,
Christian Rinke,
J. L. M. Rodrigues,
W. Rodríguez-Reillo,
K. Rossmassler,
Joshua D. Sackett,
G. Salekdeh,
Scott Saleska,
M. Scarborough,
D. Schachtman,
C. Schadt,
M. Schrenk,
A. Sczyrba,
A. Sengupta,
J. Setubal,
A. Shade,
Christine Sharp,
D. Sherman,
O. Shubenkova,
I. N. Sierra-Garcia,
R. Simister,
H. Simon,
S. Sjöling,
J. Slonczewski,
Rafael Soares Correa de Souza,
J. Spear,
J. Stegen,
R. Stepanauskas,
F. Stewart,
G. Suen,
Matthew B. Sullivan,
D. Sumner,
B. Swan,
W. Swingley,
J. Tarn,
G. Taylor,
H. Teeling,
M. Tekere,
A. Teske,
T. Thomas,
C. Thrash,
J. Tiedje,
C. Ting,
B. Tully,
G. Tyson,
Osvlado Ulloa,
D. Valentine,
Marc Warwick Van Goethem,
J. VanderGheynst,
T. Verbeke,
John Vollmers,
A. Vuillemin,
N. Waldo,
D. Walsh,
B. Weimer,
T. Whitman,
P. van der Wielen,
Michael Wilkins,
Timothy J. Williams,
B. Woodcroft,
Jamie Woolet,
K. Wrighton,
Jun Ye,
E. Young,
N. Youssef,
F. Yu,
T. Zemskaya,
Ryan M. Ziels,
T. Woyke,
N. Mouncey,
Natalia N. Ivanova,
N. Kyrpides,
E. Eloe-Fadrosh
|
9 |
2020 |
9 🐜
|
🐜
|
MEMOTE for standardized genome-scale metabolic model testing
69 auth.
Christian Lieven,
M. Beber,
B. Olivier,
Frank T. Bergmann,
M. Ataman,
P. Babaei,
J. Bartell,
L. Blank,
Siddharth M. Chauhan,
Kevin Correia,
C. Diener,
Andreas Dräger,
B. Ebert,
Janaka N. Edirisinghe,
José P. Faria,
...
Adam M. Feist,
Georgios Fengos,
R. Fleming,
Beatriz García-Jiménez,
V. Hatzimanikatis,
Wout van Helvoirt,
C. Henry,
H. Hermjakob,
Markus J. Herrgård,
A. Kaafarani,
H. Kim,
Zachary A. King,
Steffen Klamt,
E. Klipp,
J. Koehorst,
M. König,
Meiyappan Lakshmanan,
Dong-Yup Lee,
S. Lee,
Sunjae Lee,
N. Lewis,
Filipe Liu,
Hongwu Ma,
D. Machado,
R. Mahadevan,
Paulo Maia,
A. Mardinoğlu,
Gregory L. Medlock,
Jonathan M. Monk,
J. Nielsen,
L. Nielsen,
Juan Nogales,
I. Nookaew,
B. Palsson,
J. Papin,
K. Patil,
M. Poolman,
N. Price,
O. Reséndis-Antonio,
A. Richelle,
I. Rocha,
Benjamín J. Sánchez,
P. Schaap,
Rahuman S. Malik Sheriff,
S. Shoaie,
Nikolaus Sonnenschein,
B. Teusink,
Paulo Vilaça,
J. Vik,
Judith A. H. Wodke,
Joana C. Xavier,
Qianqian Yuan,
M. Zakhartsev,
Cheng Zhang
|
8 |
2020 |
8 🐜
|
🐜
|
Vitamin K2 Is a Mitochondrial Electron Carrier That Rescues Pink1 Deficiency
12 auth.
M. Vos,
G. Esposito,
Janaka N. Edirisinghe,
Sven Vilain,
Dominik Haddad,
Jan R. Slabbaert,
...
S. Van Meensel,
O. Schaap,
B. de Strooper,
R. Meganathan,
V. Morais,
P. Verstreken
|
8 |
2012 |
8 🐜
|
🐜
|
Genome Sequences of the Biotechnologically Important Bacillus megaterium Strains QM B1551 and DSM319
25 auth.
M. Eppinger,
B. Bunk,
M. Johns,
Janaka N. Edirisinghe,
Kirthi K. Kutumbaka,
Sara S. K. Koenig,
Heather Huot Creasy,
M. J. Rosovitz,
David R. Riley,
Sean C. Daugherty,
Madeleine Martin,
Liam D. H. Elbourne,
I. Paulsen,
R. Biedendieck,
C. Braun,
...
S. Grayburn,
S. Dhingra,
V. Lukyanchuk,
B. Ball,
Riaz Ul-Qamar,
J. Seibel,
E. Bremer,
D. Jahn,
J. Ravel,
P. Vary
|
7 |
2011 |
7 🐜
|
🐜
|
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes
22 auth.
S. Seaver,
Filipe Liu,
Qizh Zhang,
James G. Jeffryes,
José P. Faria,
Janaka N. Edirisinghe,
Michael B. Mundy,
N. Chia,
E. Noor,
M. Beber,
...
A. Best,
M. DeJongh,
Jeffrey A. Kimbrel,
P. D’haeseleer,
S. McCorkle,
Jay R. Bolton,
Erik Pearson,
S. Canon,
E. Wood-Charlson,
R. Cottingham,
A. Arkin,
C. Henry
|
7 |
2020 |
7 🐜
|
🐜
|
Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine
15 auth.
A. Heinken,
Johannes Hertel,
Geeta Acharya,
D. Ravcheev,
M. Nyga,
Onyedika Emmanuel Okpala,
Marcus Hogan,
Stefanía Magnúsdóttir,
Filippo Martinelli,
Bram Nap,
...
German Preciat,
Janaka N. Edirisinghe,
C. Henry,
R. Fleming,
I. Thiele
|
6 |
2023 |
6 🐜
|
🐜
|
Metabolic Reconstruction and Modeling Microbial Electrosynthesis
13 auth.
C. Marshall,
C. Marshall,
C. Marshall,
Daniel E. Ross,
K. Handley,
K. Handley,
P. Weisenhorn,
Janaka N. Edirisinghe,
C. Henry,
J. Gilbert,
...
J. Gilbert,
H. May,
R. Norman
|
6 |
2016 |
6 🐜
|
🐜
|
The DOE Systems Biology Knowledgebase (KBase)
78 auth.
A. Arkin,
Rick L. Stevens,
R. Cottingham,
S. Maslov,
C. Henry,
Paramvir S. Dehal,
D. Ware,
Fernando Pérez,
N. Harris,
S. Canon,
Michael W. Sneddon,
Matthew L. Henderson,
William J. Riehl,
D. Gunter,
Daniel Murphy-Olson,
...
Stephen Y Chan,
R. Kamimura,
T. Brettin,
Folker Meyer,
D. Chivian,
D. Weston,
E. Glass,
B. Davison,
Benjamin H. Allen,
J. Baumohl,
A. Best,
Ben Bowen,
S. Brenner,
Christopher Bun,
J. Chandonia,
Jer-Ming Chia,
R. Colasanti,
Neal Conrad,
James J. Davis,
M. DeJongh,
Scott Devoid,
Emily M. Dietrich,
Meghan Drake,
I. Dubchak,
Janaka N. Edirisinghe,
Gang Fang,
José P. Faria,
Paul Frybarger,
Wolfgang Gerlach,
M. Gerstein,
James Gurtowski,
Holly L. Haun,
Fei He,
Rashmi Jain,
marcin p. joachimiak,
Kevin P. Keegan,
S. Kondo,
Vivek Kumar,
M. Land,
M. Mills,
P. Novichkov,
Taeyun Oh,
G. Olsen,
B. Olson,
B. Parrello,
S. Pasternak,
Erik Pearson,
S. Poon,
Gavin A. Price,
Srividya Ramakrishnan,
P. Ranjan,
P. Ronald,
M. Schatz,
S. Seaver,
Maulik Shukla,
R. Sutormin,
M. Syed,
Jim Thomason,
N. Tintle,
Daifeng Wang,
Fangfang Xia,
H. Yoo,
Shinjae Yoo
|
6 |
2016 |
6 🐜
|
🐜
|
Comparative Genomics of Cultured and Uncultured Strains Suggests Genes Essential for Free-Living Growth of Liberibacter
7 auth.
Jennie R. Fagen,
Michael T Leonard,
C. M. McCullough,
Janaka N. Edirisinghe,
C. Henry,
Michael J. Davis,
...
E. Triplett
|
5 |
2014 |
5 🐜
|
🐜
|
Memote: A community driven effort towards a standardized genome-scale metabolic model test suite
67 auth.
Christian Lieven,
M. Beber,
B. Olivier,
Frank T. Bergmann,
M. Ataman,
P. Babaei,
J. Bartell,
L. Blank,
Siddharth M. Chauhan,
Kevin Correia,
C. Diener,
Andreas Dräger,
B. Ebert,
Janaka N. Edirisinghe,
José P. Faria,
...
Adam M. Feist,
Georgios Fengos,
R. Fleming,
Beatriz García-Jiménez,
V. Hatzimanikatis,
Wout van Helvoirt,
C. Henry,
H. Hermjakob,
Markus J. Herrgård,
H. Kim,
Zachary A. King,
J. Koehorst,
Steffen Klamt,
E. Klipp,
Meiyappan Lakshmanan,
N. L. Le Novère,
Dong-Yup Lee,
Sang Yup Lee,
Sunjae Lee,
N. Lewis,
Hongwu Ma,
D. Machado,
R. Mahadevan,
Paulo Maia,
A. Mardinoğlu,
Gregory L. Medlock,
Jonathan M. Monk,
Jens Nielsen,
L. Nielsen,
Juan Nogales,
I. Nookaew,
O. Reséndis-Antonio,
B. Palsson,
J. Papin,
K. Patil,
M. Poolman,
N. Price,
A. Richelle,
I. Rocha,
Benjamín J. Sánchez,
P. Schaap,
Rahuman S. Malik Sheriff,
S. Shoaie,
Nikolaus Sonnenschein,
B. Teusink,
Paulo Vilaça,
J. Vik,
Judith A. H. Wodke,
Joana C. Xavier,
Qianqian Yuan,
M. Zakhartsev,
Cheng Zhang
|
5 |
2018 |
5 🐜
|