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Protein structure prediction and analysis using the Robetta server
David E. Kim,
D. Chivian,
D. Baker
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10 |
2004 |
10 🐬
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KBase: The United States Department of Energy Systems Biology Knowledgebase
80 auth.
A. Arkin,
R. Cottingham,
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N. Harris,
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S. Canon,
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Matthew L. Henderson,
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Stephen Y Chan,
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R. Kamimura,
Meghan Drake,
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D. Chivian,
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D. Weston,
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J. Baumohl,
A. Best,
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R. Colasanti,
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M. DeJongh,
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I. Dubchak,
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Paul Frybarger,
Wolfgang Gerlach,
M. Gerstein,
A. Greiner,
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Fei He,
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marcin p. joachimiak,
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M. Land,
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M. Mills,
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G. Olsen,
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B. Parrello,
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M. Syed,
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Shinjae Yoo,
Dantong Yu
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10 |
2018 |
10 🐜
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A genomic catalog of Earth’s microbiomes
267 auth.
Stephen Nayfach,
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Edward Kirton,
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Janaka N. Edirisinghe,
C. Henry,
S. Jungbluth,
D. Chivian,
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E. Wood-Charlson,
A. Arkin,
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A. Visel,
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9 |
2020 |
9 🐜
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MicrobesOnline: an integrated portal for comparative and functional genomics
13 auth.
Paramvir S. Dehal,
marcin p. joachimiak,
M. Price,
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J. Baumohl,
D. Chivian,
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K. Keller,
P. Novichkov,
...
I. Dubchak,
E. Alm,
A. Arkin
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8 |
2009 |
8 🐜
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Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth
20 auth.
D. Chivian,
Eoin L. Brodie,
E. Alm,
D. Culley,
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T. DeSantis,
T. Gihring,
A. Lapidus,
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D. Moser,
P. Richardson,
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F. Brockman,
A. Arkin,
T. Onstott
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8 |
2008 |
8 🦁
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Modeling structurally variable regions in homologous proteins with rosetta
C. Rohl,
Charles E.M. Strauss,
D. Chivian,
David Baker
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8 |
2004 |
8 🐬
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🐜
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Rosetta in CASP4: Progress in ab initio protein structure prediction
7 auth.
Richard Bonneau,
J. Tsai,
I. Ruczinski,
D. Chivian,
C. Rohl,
C. Strauss,
...
D. Baker
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8 |
2001 |
8 🐜
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Automated prediction of CASP‐5 structures using the Robetta server
10 auth.
D. Chivian,
David E. Kim,
L. Malmström,
P. Bradley,
Timothy Robertson,
Paul Murphy,
...
C. Strauss,
Richard Bonneau,
C. Rohl,
D. Baker
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8 |
2003 |
8 🦁
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De novo prediction of three-dimensional structures for major protein families.
8 auth.
Richard Bonneau,
C. Strauss,
C. Rohl,
D. Chivian,
Phillip Bradley,
L. Malmström,
...
Timothy Robertson,
D. Baker
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8 |
2002 |
8 🐜
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🐜
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Structure prediction for CASP7 targets using extensive all‐atom refinement with Rosetta@home
17 auth.
Rhiju Das,
Bin Qian,
Srivatsan Raman,
R. Vernon,
James M. Thompson,
P. Bradley,
S. Khare,
M. Tyka,
Divya Bhat,
D. Chivian,
...
David E. Kim,
W. Sheffler,
L. Malmström,
Andrew M Wollacott,
Chu Wang,
I. André,
D. Baker
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7 |
2007 |
7 🐜
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🐜
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Rosetta predictions in CASP5: Successes, failures, and prospects for complete automation
12 auth.
P. Bradley,
D. Chivian,
J. Meiler,
K. Misura,
C. Rohl,
W. Schief,
...
W. Wedemeyer,
Ora Schueler‐Furman,
Paul Murphy,
Jack Schonbrun,
Charles E.M. Strauss,
D. Baker
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7 |
2003 |
7 🐜
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🐬
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Physically realistic homology models built with ROSETTA can be more accurate than their templates.
K. Misura,
D. Chivian,
C. Rohl,
David E. Kim,
D. Baker
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7 |
2006 |
7 🐬
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