BetterScholar BetterScholar
12
Role
Title
Level Year L/R
🦁 CheckV assesses the quality and completeness of metagenome-assembled viral genomes
Stephen Nayfach, A. P. Camargo, Frederik Schulz, E. Eloe-Fadrosh, S. Roux, N. Kyrpides
9 2020
9
🦁
🐜 A unified catalog of 204,938 reference genomes from the human gut microbiome
13 auth. Alexandre Almeida, Stephen Nayfach, M. Boland, F. Strozzi, Martin Beracochea, Z. Shi, K. Pollard, Ekaterina A. Sakharova, Donovan H. Parks, P. Hugenholtz, ... N. Segata, N. Kyrpides, R. Finn
9 2020
9
🐜
🦁 A genomic catalog of Earth’s microbiomes
267 auth. Stephen Nayfach, S. Roux, Rekha Seshadri, Daniel W. Udwary, N. Varghese, Frederik Schulz, Dongying Wu, David Páez-Espino, I. Chen, Marcel Huntemann, Krishna Palaniappan, J. Ladau, Supratim Mukherjee, T. Reddy, T. Nielsen, ... Edward Kirton, José P. Faria, Janaka N. Edirisinghe, C. Henry, S. Jungbluth, D. Chivian, Paramvir S. Dehal, E. Wood-Charlson, A. Arkin, S. Tringe, A. Visel, H. Abreu, S. Acinas, E. Allen, M. Allen, L. Alteio, G. Andersen, A. Anesio, G. Attwood, Viridiana Avila-Magaña, Yacine Badis, J. Bailey, B. Baker, P. Baldrian, H. Barton, D. Beck, Eric D. Becraft, H. Beller, J. Beman, R. Bernier-Latmani, T. Berry, Anthony D. Bertagnolli, S. Bertilsson, Jennifer M. Bhatnagar, J. Bird, Jeffrey L. Blanchard, Sara E. Blumer-Schuette, B. Bohannan, M. Borton, Allyson Brady, S. Brawley, J. Brodie, Steven Brown, Jennifer R. Brum, A. Brune, D. Bryant, A. Buchan, D. Buckley, J. Buongiorno, H. Cadillo-Quiroz, S. Caffrey, A. Campbell, Barbara Campbell, S. Carr, J. Carroll, S. Cary, Anna M. Cates, R. Cattolico, R. Cavicchioli, L. Chistoserdova, Maureen L. Coleman, P. Constant, Jonathan M. Conway, W. M. Mac Cormack, S. Crowe, B. Crump, C. Currie, R. Daly, Kristen M. DeAngelis, Vincent J. Denef, S. Denman, A. Desta, H. Dionisi, J. Dodsworth, Nina Dombrowski, Timothy Donohue, Mark Dopson, Timothy P. Driscoll, P. Dunfield, C. Dupont, Katherine A. Dynarski, V. Edgcomb, E. Edwards, M. Elshahed, Israel Figueroa, Beverly E. Flood, Nathaniel W. Fortney, Caroline S. Fortunato, C. Francis, C. Gachon, S. Garcia, M. C. Gazitúa, T. Gentry, L. Gerwick, Javad Gharechahi, P. Girguis, J. Gladden, M. Gradoville, S. Grasby, Kelly Gravuer, C. Grettenberger, R. Gruninger, Jiarong Guo, M. Habteselassie, S. Hallam, R. Hatzenpichler, B. Hausmann, T. Hazen, B. Hedlund, C. Henny, L. Herfort, Maria Hernandez, Olivia S. Hershey, M. Hess, E. Hollister, L. Hug, D. Hunt, J. Jansson, J. Jarett, V. Kadnikov, C. Kelly, R. Kelly, W. Kelly, C. Kerfeld, Jefferey A Kimbrel, J. Klassen, K. Konstantinidis, Laura L. Lee, Wenjun Li, Andrew J. Loder, A. Loy, M. Lozada, B. MacGregor, C. Magnabosco, Aline Maria da Silva, R. McKay, K. McMahon, C. McSweeney, Mónica Medina, Laura K. Meredith, Jessica E. Mizzi, T. Mock, L. Momper, M. Moran, C. Morgan-Lang, D. Moser, G. Muyzer, D. Myrold, Maisie Nash, C. Nesbø, A. Neumann, R. Neumann, D. Noguera, T. Northen, J. Norton, Brent Nowinski, K. Nüsslein, M. O’Malley, R. Oliveira, Valéria Maia de Oliveira, T. Onstott, J. Osvatic, Ouyang Yang, M. Pachiadaki, J. Parnell, L. Partida-Martínez, K. Peay, D. Pelletier, Xuefeng Peng, Michael Pester, J. Pett‐Ridge, Sari Peura, P. Pjevac, Alvaro M. Plominsky, Anja Poehlein, P. Pope, N. Ravin, M. Redmond, Rebecca A. Reiss, V. Rich, Christian Rinke, J. L. M. Rodrigues, W. Rodríguez-Reillo, K. Rossmassler, Joshua D. Sackett, G. Salekdeh, Scott Saleska, M. Scarborough, D. Schachtman, C. Schadt, M. Schrenk, A. Sczyrba, A. Sengupta, J. Setubal, A. Shade, Christine Sharp, D. Sherman, O. Shubenkova, I. N. Sierra-Garcia, R. Simister, H. Simon, S. Sjöling, J. Slonczewski, Rafael Soares Correa de Souza, J. Spear, J. Stegen, R. Stepanauskas, F. Stewart, G. Suen, Matthew B. Sullivan, D. Sumner, B. Swan, W. Swingley, J. Tarn, G. Taylor, H. Teeling, M. Tekere, A. Teske, T. Thomas, C. Thrash, J. Tiedje, C. Ting, B. Tully, G. Tyson, Osvlado Ulloa, D. Valentine, Marc Warwick Van Goethem, J. VanderGheynst, T. Verbeke, John Vollmers, A. Vuillemin, N. Waldo, D. Walsh, B. Weimer, T. Whitman, P. van der Wielen, Michael Wilkins, Timothy J. Williams, B. Woodcroft, Jamie Woolet, K. Wrighton, Jun Ye, E. Young, N. Youssef, F. Yu, T. Zemskaya, Ryan M. Ziels, T. Woyke, N. Mouncey, Natalia N. Ivanova, N. Kyrpides, E. Eloe-Fadrosh
9 2020
9
🦁
🦁 New insights from uncultivated genomes of the global human gut microbiome
Stephen Nayfach, Z. Shi, Rekha Seshadri, K. Pollard, N. Kyrpides
9 2019
9
🦁
🦁 An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography
Stephen Nayfach, B. Rodriguez-Mueller, Nandita R. Garud, K. Pollard
8 2016
8
🦁
🦁 Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome
11 auth. Stephen Nayfach, David Páez-Espino, Lee Call, Soo Jen Low, Hila Sberro, Natalia N. Ivanova, ... A. Proal, M. Fischbach, A. Bhatt, P. Hugenholtz, N. Kyrpides
8 2021
8
🦁
🦁 Average genome size estimation improves comparative metagenomics and sheds light on the functional ecology of the human microbiome
Stephen Nayfach, K. Pollard
8 2015
8
🦁
🐜 IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses
15 auth. S. Roux, David Páez-Espino, I. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, T. Reddy, Stephen Nayfach, Frederik Schulz, Lee Call, ... R. Neches, T. Woyke, Natalia N. Ivanova, E. Eloe-Fadrosh, N. Kyrpides
8 2020
8
🐜
🦁 Toward Accurate and Quantitative Comparative Metagenomics
Stephen Nayfach, K. Pollard
7 2016
7
🦁
🐜 Identification of mobile genetic elements with geNomad
9 auth. A. P. Camargo, Simon Roux, Frederik Schulz, Michal Babinski, Yan Xu, B. Hu, ... P. Chain, Stephen Nayfach, N. Kyrpides
7 2023
7
🐜
🐜 Modulation of a Circulating Uremic Solute via Rational Genetic Manipulation of the Gut Microbiota.
9 auth. A. S. Devlin, A. Marcobal, Dylan Dodd, Stephen Nayfach, Natalie S. Plummer, Tim Meyer, ... Katherine S. Pollard, J. Sonnenburg, Michael A. Fischbach
7 2016
7
🐜
🐜 Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes
16 auth. S. Roux, M. Krupovic, R. Daly, Adair L. Borges, Stephen Nayfach, Frederik Schulz, A. Sharrar, P. M. Matheus Carnevali, Jan-Fang Cheng, Natalia N. Ivanova, ... Joseph Bondy-Denomy, K. Wrighton, T. Woyke, A. Visel, N. Kyrpides, E. Eloe-Fadrosh
7 2019
7
🐜