|
🐜
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A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
7 auth.
Donovan H. Parks,
M. Chuvochina,
D. Waite,
Christian Rinke,
Adam Skarshewski,
Pierre-Alain Chaumeil,
...
P. Hugenholtz
|
11 |
2018 |
11
🐜
|
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Insights into the phylogeny and coding potential of microbial dark matter
22 auth.
Christian Rinke,
P. Schwientek,
A. Sczyrba,
Natalia N. Ivanova,
I. Anderson,
Jan-Fang Cheng,
A. Darling,
S. Malfatti,
B. Swan,
E. Gies,
...
J. Dodsworth,
B. Hedlund,
G. Tsiamis,
S. Sievert,
Wen-Tso Liu,
J. Eisen,
S. Hallam,
N. Kyrpides,
R. Stepanauskas,
E. Rubin,
P. Hugenholtz,
T. Woyke
|
10 |
2013 |
10
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|
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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
54 auth.
R. M. Bowers,
N. Kyrpides,
R. Stepanauskas,
Miranda Harmon-Smith,
Devin F R Doud,
T. Reddy,
Frederik Schulz,
J. Jarett,
A. Rivers,
E. Eloe-Fadrosh,
S. Tringe,
Natalia N. Ivanova,
A. Copeland,
Alicia Clum,
Eric D. Becraft,
...
R. Malmstrom,
B. Birren,
M. Podar,
P. Bork,
G. Weinstock,
G. Garrity,
J. Dodsworth,
Shibu Yooseph,
G. Sutton,
F. O. Gloeckner,
J. Gilbert,
W. Nelson,
S. Hallam,
S. Jungbluth,
Thijs J. G. Ettema,
S. Tighe,
K. Konstantinidis,
Wen-Tso Liu,
B. Baker,
T. Rattei,
J. Eisen,
B. Hedlund,
K. McMahon,
N. Fierer,
R. Knight,
R. Finn,
G. Cochrane,
I. Karsch-Mizrachi,
G. Tyson,
Christian Rinke,
A. Lapidus,
Folker Meyer,
Pelin Yilmaz,
Donovan H. Parks,
A. M. Eren,
L. Schriml,
J. Banfield,
P. Hugenholtz,
T. Woyke
|
10 |
2017 |
10
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|
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Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
8 auth.
Donovan H. Parks,
Christian Rinke,
M. Chuvochina,
Pierre-Alain Chaumeil,
B. Woodcroft,
P. Evans,
...
P. Hugenholtz,
G. Tyson
|
10 |
2017 |
10
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GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy
Donovan H. Parks,
M. Chuvochina,
Christian Rinke,
Aaron J. Mussig,
Pierre-Alain Chaumeil,
P. Hugenholtz
|
10 |
2021 |
10
🐬
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A complete domain-to-species taxonomy for Bacteria and Archaea
Donovan H. Parks,
M. Chuvochina,
Pierre-Alain Chaumeil,
Christian Rinke,
Aaron J. Mussig,
P. Hugenholtz
|
9 |
2020 |
9
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A genomic catalog of Earth’s microbiomes
267 auth.
Stephen Nayfach,
S. Roux,
Rekha Seshadri,
Daniel W. Udwary,
N. Varghese,
Frederik Schulz,
Dongying Wu,
David Páez-Espino,
I. Chen,
Marcel Huntemann,
Krishna Palaniappan,
J. Ladau,
Supratim Mukherjee,
T. Reddy,
T. Nielsen,
...
Edward Kirton,
José P. Faria,
Janaka N. Edirisinghe,
C. Henry,
S. Jungbluth,
D. Chivian,
Paramvir S. Dehal,
E. Wood-Charlson,
A. Arkin,
S. Tringe,
A. Visel,
H. Abreu,
S. Acinas,
E. Allen,
M. Allen,
L. Alteio,
G. Andersen,
A. Anesio,
G. Attwood,
Viridiana Avila-Magaña,
Yacine Badis,
J. Bailey,
B. Baker,
P. Baldrian,
H. Barton,
D. Beck,
Eric D. Becraft,
H. Beller,
J. Beman,
R. Bernier-Latmani,
T. Berry,
Anthony D. Bertagnolli,
S. Bertilsson,
Jennifer M. Bhatnagar,
J. Bird,
Jeffrey L. Blanchard,
Sara E. Blumer-Schuette,
B. Bohannan,
M. Borton,
Allyson Brady,
S. Brawley,
J. Brodie,
Steven Brown,
Jennifer R. Brum,
A. Brune,
D. Bryant,
A. Buchan,
D. Buckley,
J. Buongiorno,
H. Cadillo-Quiroz,
S. Caffrey,
A. Campbell,
Barbara Campbell,
S. Carr,
J. Carroll,
S. Cary,
Anna M. Cates,
R. Cattolico,
R. Cavicchioli,
L. Chistoserdova,
Maureen L. Coleman,
P. Constant,
Jonathan M. Conway,
W. M. Mac Cormack,
S. Crowe,
B. Crump,
C. Currie,
R. Daly,
Kristen M. DeAngelis,
Vincent J. Denef,
S. Denman,
A. Desta,
H. Dionisi,
J. Dodsworth,
Nina Dombrowski,
Timothy Donohue,
Mark Dopson,
Timothy P. Driscoll,
P. Dunfield,
C. Dupont,
Katherine A. Dynarski,
V. Edgcomb,
E. Edwards,
M. Elshahed,
Israel Figueroa,
Beverly E. Flood,
Nathaniel W. Fortney,
Caroline S. Fortunato,
C. Francis,
C. Gachon,
S. Garcia,
M. C. Gazitúa,
T. Gentry,
L. Gerwick,
Javad Gharechahi,
P. Girguis,
J. Gladden,
M. Gradoville,
S. Grasby,
Kelly Gravuer,
C. Grettenberger,
R. Gruninger,
Jiarong Guo,
M. Habteselassie,
S. Hallam,
R. Hatzenpichler,
B. Hausmann,
T. Hazen,
B. Hedlund,
C. Henny,
L. Herfort,
Maria Hernandez,
Olivia S. Hershey,
M. Hess,
E. Hollister,
L. Hug,
D. Hunt,
J. Jansson,
J. Jarett,
V. Kadnikov,
C. Kelly,
R. Kelly,
W. Kelly,
C. Kerfeld,
Jefferey A Kimbrel,
J. Klassen,
K. Konstantinidis,
Laura L. Lee,
Wenjun Li,
Andrew J. Loder,
A. Loy,
M. Lozada,
B. MacGregor,
C. Magnabosco,
Aline Maria da Silva,
R. McKay,
K. McMahon,
C. McSweeney,
Mónica Medina,
Laura K. Meredith,
Jessica E. Mizzi,
T. Mock,
L. Momper,
M. Moran,
C. Morgan-Lang,
D. Moser,
G. Muyzer,
D. Myrold,
Maisie Nash,
C. Nesbø,
A. Neumann,
R. Neumann,
D. Noguera,
T. Northen,
J. Norton,
Brent Nowinski,
K. Nüsslein,
M. O’Malley,
R. Oliveira,
Valéria Maia de Oliveira,
T. Onstott,
J. Osvatic,
Ouyang Yang,
M. Pachiadaki,
J. Parnell,
L. Partida-Martínez,
K. Peay,
D. Pelletier,
Xuefeng Peng,
Michael Pester,
J. Pett‐Ridge,
Sari Peura,
P. Pjevac,
Alvaro M. Plominsky,
Anja Poehlein,
P. Pope,
N. Ravin,
M. Redmond,
Rebecca A. Reiss,
V. Rich,
Christian Rinke,
J. L. M. Rodrigues,
W. Rodríguez-Reillo,
K. Rossmassler,
Joshua D. Sackett,
G. Salekdeh,
Scott Saleska,
M. Scarborough,
D. Schachtman,
C. Schadt,
M. Schrenk,
A. Sczyrba,
A. Sengupta,
J. Setubal,
A. Shade,
Christine Sharp,
D. Sherman,
O. Shubenkova,
I. N. Sierra-Garcia,
R. Simister,
H. Simon,
S. Sjöling,
J. Slonczewski,
Rafael Soares Correa de Souza,
J. Spear,
J. Stegen,
R. Stepanauskas,
F. Stewart,
G. Suen,
Matthew B. Sullivan,
D. Sumner,
B. Swan,
W. Swingley,
J. Tarn,
G. Taylor,
H. Teeling,
M. Tekere,
A. Teske,
T. Thomas,
C. Thrash,
J. Tiedje,
C. Ting,
B. Tully,
G. Tyson,
Osvlado Ulloa,
D. Valentine,
Marc Warwick Van Goethem,
J. VanderGheynst,
T. Verbeke,
John Vollmers,
A. Vuillemin,
N. Waldo,
D. Walsh,
B. Weimer,
T. Whitman,
P. van der Wielen,
Michael Wilkins,
Timothy J. Williams,
B. Woodcroft,
Jamie Woolet,
K. Wrighton,
Jun Ye,
E. Young,
N. Youssef,
F. Yu,
T. Zemskaya,
Ryan M. Ziels,
T. Woyke,
N. Mouncey,
Natalia N. Ivanova,
N. Kyrpides,
E. Eloe-Fadrosh
|
9 |
2020 |
9
🐜
|
|
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|
An environmental bacterial taxon with a large and distinct metabolic repertoire
23 auth.
Micheal C. Wilson,
Tetsushi Mori,
C. Rückert,
A. Uria,
M. Helf,
Kentaro Takada,
C. Gernert,
Ursula A. E. Steffens,
N. Heycke,
Susan Schmitt,
...
Christian Rinke,
Eric J. N. Helfrich,
A. Brachmann,
C. Gurgui,
T. Wakimoto,
Matthias Kracht,
M. Crüsemann,
U. Hentschel,
I. Abe,
S. Matsunaga,
J. Kalinowski,
H. Takeyama,
J. Piel
|
8 |
2014 |
8
🐜
|
|
🐜
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Microbial dark matter ecogenomics reveals complex synergistic networks in a methanogenic bioreactor
7 auth.
M. Nobu,
T. Narihiro,
Christian Rinke,
Y. Kamagata,
S. Tringe,
T. Woyke,
...
Wen-Tso Liu
|
8 |
2015 |
8
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Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.)
13 auth.
D. Waite,
Inka Vanwonterghem,
Christian Rinke,
Donovan H. Parks,
Ying Zhang,
K. Takai,
S. Sievert,
J. Simon,
B. Campbell,
Thomas E Hanson,
...
T. Woyke,
M. Klotz,
P. Hugenholtz
|
8 |
2017 |
8
🐜
|
|
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A standardized archaeal taxonomy for the Genome Taxonomy Database
9 auth.
Christian Rinke,
M. Chuvochina,
Aaron J. Mussig,
Pierre-Alain Chaumeil,
Adrián A. Davín,
D. Waite,
...
W. Whitman,
Donovan H. Parks,
P. Hugenholtz
|
7 |
2021 |
7
🦁
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🦁
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Obtaining genomes from uncultivated environmental microorganisms using FACS–based single-cell genomics
10 auth.
Christian Rinke,
Janey Lee,
Nandita Nath,
D. Goudeau,
Brian P. Thompson,
N. Poulton,
...
E. Dmitrieff,
R. Malmstrom,
R. Stepanauskas,
T. Woyke
|
7 |
2014 |
7
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|
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Decontamination of MDA Reagents for Single Cell Whole Genome Amplification
9 auth.
T. Woyke,
A. Sczyrba,
Janey Lee,
Christian Rinke,
D. Tighe,
S. Clingenpeel,
...
R. Malmstrom,
R. Stepanauskas,
Jan-Fang Cheng
|
7 |
2011 |
7
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