|
🐬
|
CheckV assesses the quality and completeness of metagenome-assembled viral genomes
Stephen Nayfach,
A. P. Camargo,
Frederik Schulz,
E. Eloe-Fadrosh,
S. Roux,
N. Kyrpides
|
9 |
2020 |
9
🐬
|
|
🦁
|
Identification of mobile genetic elements with geNomad
9 auth.
A. P. Camargo,
Simon Roux,
Frederik Schulz,
Michal Babinski,
Yan Xu,
B. Hu,
...
P. Chain,
Stephen Nayfach,
N. Kyrpides
|
7 |
2023 |
7
🦁
|
|
🦁
|
IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata
17 auth.
A. P. Camargo,
Stephen Nayfach,
I. Chen,
Krishna Palaniappan,
Anna Ratner,
Ken Chu,
Stephan Ritter,
T. Reddy,
Supratim Mukherjee,
Frederik Schulz,
...
Lee Call,
R. Neches,
T. Woyke,
Natalia N. Ivanova,
E. Eloe-Fadrosh,
N. Kyrpides,
S. Roux
|
7 |
2022 |
7
🦁
|
|
🐜
|
Expansion of the global RNA virome reveals diverse clades of bacteriophages
110 auth.
Uri Neri,
Y. Wolf,
S. Roux,
A. P. Camargo,
Benjamin D. Lee,
Darius Kazlauskas,
I. Chen,
Natalia N. Ivanova,
L. Z. Allen,
David Páez-Espino,
D. Bryant,
D. Bhaya,
M. Krupovic,
V. Dolja,
N. Kyrpides,
...
E. Koonin,
U. Gophna,
Adrienne B. Narrowe,
Alexander J. Probst,
A. Sczyrba,
A. Kohler,
A. Séguin,
A. Shade,
B. Campbell,
Björn D. Lindahl,
B. Reese,
B. Roque,
C. DeRito,
C. Averill,
D. Cullen,
David A. C. Beck,
D. Walsh,
D. M. Ward,
Dongying Wu,
E. Eloe-Fadrosh,
Eoin L. Brodie,
E. Young,
E. Lilleskov,
F. Castillo,
Francis M. Martin,
Gary R. LeCleir,
G. Attwood,
H. Cadillo-Quiroz,
H. Simon,
I. Hewson,
I. Grigoriev,
J. Tiedje,
J. Jansson,
Janey Lee,
J. VanderGheynst,
J. Dangl,
J. Bowman,
Jeffrey L. Blanchard,
J. Bowen,
Jiangbin Xu,
J. Banfield,
J. Deming,
J. Kostka,
J. Gladden,
J. Rapp,
Joshua L. Sharpe,
K. McMahon,
K. Treseder,
K. Bidle,
K. Wrighton,
K. Thamatrakoln,
K. Nusslein,
Laura K. Meredith,
L. Ramírez,
M. Buée,
Marcel Huntemann,
M. Kalyuzhnaya,
M. Waldrop,
M. Sullivan,
M. Schrenk,
M. Hess,
Michael A. Vega,
M. O’Malley,
Mónica Medina,
N. Gilbert,
N. Delherbe,
O. U. Mason,
P. Dijkstra,
P. Chuckran,
P. Baldrian,
P. Constant,
R. Stepanauskas,
R. Daly,
Regina Lamendella,
R. Gruninger,
R. Mckay,
S. Hylander,
Sarah L. Lebeis,
Sarah P. Esser,
S. Acinas,
Steven Wilhelm,
S. Singer,
Susannah Tringe,
T. Woyke,
T. Reddy,
Terrence H. Bell,
T. Mock,
T. McAllister,
V. Thiel,
Vincent J. Denef,
Wen-Tso Liu,
Willm Martens‐Habbena,
Xiao‐Jun Allen Liu,
Zachary S. Cooper,
Zhong Wang
|
7 |
2022 |
7
🐜
|
|
🐜
|
iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria
7 auth.
S. Roux,
A. P. Camargo,
F. Coutinho,
S. Dabdoub,
B. Dutilh,
Stephen Nayfach,
...
Andrew J. Tritt
|
7 |
2023 |
7
🐜
|
|
🐜
|
Unraveling the functional dark matter through global metagenomics
132 auth.
Georgios A Pavlopoulos,
Fotis A. Baltoumas,
Sirui Liu,
Oguz Selvitopi,
A. P. Camargo,
Stephen Nayfach,
Ariful Azad,
Simon Roux,
Lee Call,
Natalia N. Ivanova,
I. Chen,
David Páez-Espino,
E. Karatzas,
S. Acinas,
N. Ahlgren,
...
G. Attwood,
P. Baldrian,
T. Berry,
Jennifer M. Bhatnagar,
D. Bhaya,
K. Bidle,
Jeffrey L. Blanchard,
Eric S. Boyd,
Jennifer L. Bowen,
J. Bowman,
S. Brawley,
E. Brodie,
Andreas Brune,
Donald A. Bryant,
Alison Buchan,
H. Cadillo-Quiroz,
Barbara J. Campbell,
R. Cavicchioli,
P. Chuckran,
Maureen Coleman,
Sean A. Crowe,
D. Colman,
Cameron R. Currie,
Jeff Dangl,
N. Delherbe,
Vincent J. Denef,
P. Dijkstra,
Daniel D. Distel,
E. Eloe-Fadrosh,
Kirsten Fisher,
C. Francis,
A. Garoutte,
Amélie C. M. Gaudin,
L. Gerwick,
F. Godoy-Vitorino,
Peter Guerra,
Jiarong Guo,
M. Habteselassie,
S. Hallam,
R. Hatzenpichler,
U. Hentschel,
Matthias Hess,
Ann M. Hirsch,
L. Hug,
J. Hultman,
D. Hunt,
Marcel Huntemann,
W. Inskeep,
Timothy Y. James,
Janet K. Jansson,
Eric R. Johnston,
Marina Kalyuzhnaya,
Charlene N. Kelly,
Robert M. Kelly,
J. Klassen,
K. Nüsslein,
J. Kostka,
S. Lindow,
E. Lilleskov,
Mackenzie M. Lynes,
R. Mackelprang,
Francis M. Martin,
O. U. Mason,
R. McKay,
Katherine D. McMahon,
David A. Mead,
Mónica Medina,
Laura K. Meredith,
T. Mock,
W. Mohn,
M. Moran,
Alison E. Murray,
Josh D. Neufeld,
Rebecca B Neumann,
J. Norton,
L. Partida-Martínez,
Nicole Pietrasiak,
D. Pelletier,
T. Reddy,
B. Reese,
Nicholas J. Reichart,
R. Reiss,
M. Saito,
Daniel P. Schachtman,
Rekha Seshadri,
A. Shade,
David H. Sherman,
R. Simister,
Holly Simon,
James Stegen,
R. Stepanauskas,
Matthew B. Sullivan,
D. Y. Sumner,
H. Teeling,
K. Thamatrakoln,
K. Treseder,
Susannah Tringe,
P. Vaishampayan,
D. L. Valentine,
N. Waldo,
M. Waldrop,
D. Walsh,
David M. Ward,
Michael J. Wilkins,
T. Whitman,
Jamie Woolet,
T. Woyke,
I. Iliopoulos,
K. Konstantinidis,
J. Tiedje,
J. Pett-Ridge,
David Baker,
A. Visel,
Christos A. Ouzounis,
S. Ovchinnikov,
A. Buluç,
N. Kyrpides
|
6 |
2023 |
6
🐜
|
|
🐜
|
Mining metatranscriptomes reveals a vast world of viroid-like circular RNAs
11 auth.
Benjamin D. Lee,
Uri Neri,
S. Roux,
Y. Wolf,
A. P. Camargo,
M. Krupovic,
...
P. Simmonds,
N. Kyrpides,
U. Gophna,
V. Dolja,
E. Koonin
|
5 |
2023 |
5
🐜
|
|
🐬
|
CheckV: assessing the quality of metagenome-assembled viral genomes
Stephen Nayfach,
A. P. Camargo,
E. Eloe-Fadrosh,
S. Roux,
N. Kyrpides
|
5 |
2020 |
5
🐬
|
|
🦁
|
Plant microbiomes harbor potential to promote nutrient turnover in impoverished substrates of a Brazilian biodiversity hotspot
10 auth.
A. P. Camargo,
R. S. D. de Souza,
J. José,
I. Gerhardt,
R. A. Dante,
Supratim Mukherjee,
...
Marcel Huntemann,
N. Kyrpides,
M. Carazzolle,
Paulo Arruda
|
5 |
2022 |
5
🦁
|
|
🦁
|
You can move, but you can’t hide: identification of mobile genetic elements with geNomad
9 auth.
A. P. Camargo,
S. Roux,
Frederik Schulz,
Michal Babinski,
Yan Xu,
Bin Hu,
...
P. Chain,
Stephen Nayfach,
N. Kyrpides
|
4 |
2023 |
4
🦁
|
