BetterScholar BetterScholar
15
Role
Title
Level Year L/R
🐜 Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data
21 auth. M. Grabherr, B. Haas, M. Yassour, J. Levin, Dawn A Thompson, I. Amit, Xian Adiconis, Lin Fan, R. Raychowdhury, Qiandong Zeng, ... Zehua Chen, E. Mauceli, N. Hacohen, A. Gnirke, Nicholas Rhind, F. Di Palma, B. Birren, C. Nusbaum, K. Lindblad-Toh, N. Friedman, A. Regev
13 2011
13
🐜
🐜 Structure, Function and Diversity of the Healthy Human Microbiome
248 auth. C. Huttenhower, D. Gevers, R. Knight, Sahar Abubucker, J. Badger, A. Chinwalla, H. Creasy, A. Earl, Michael G. Fitzgerald, R. Fulton, M. Giglio, Kymberlie Hallsworth-Pepin, E. Lobos, R. Madupu, V. Magrini, ... John Martin, M. Mitreva, D. Muzny, E. Sodergren, J. Versalovic, A. Wollam, K. Worley, J. Wortman, Sarah K. Young, Qiandong Zeng, K. Aagaard, Olukemi O. Abolude, E. Allen-Vercoe, E. Alm, Lucia Alvarado, G. Andersen, S. Anderson, Elizabeth L. Appelbaum, H. Arachchi, G. Armitage, Cesar Arze, T. Ayvaz, Carl C. Baker, L. Begg, Tsegahiwot Belachew, Veena Bhonagiri, Monika Bihan, M. Blaser, Toby Bloom, Vivien R. Bonazzi, J. Brooks, G. Buck, C. Buhay, D. Busam, Joseph L. Campbell, S. Canon, B. Cantarel, P. Chain, I. Chen, Lei Chen, Shaila Chhibba, Ken Chu, Dawn M. Ciulla, J. Clemente, S. Clifton, S. Conlan, J. Crabtree, M. Cutting, Noam J. Davidovics, Catherine C. Davis, T. DeSantis, C. Deal, Kimberley D. Delehaunty, F. Dewhirst, E. Deych, Yan Ding, D. Dooling, Shannon P. Dugan, W. Dunne, A. S. Durkin, Robert C. Edgar, R. Erlich, Candace N. Farmer, R. Farrell, Karoline Faust, M. Feldgarden, Victor Felix, Sheila A Fisher, A. Fodor, L. Forney, Les Foster, V. D. Francesco, Jonathan Friedman, Dennis C. Friedrich, C. Fronick, L. Fulton, Hongyu Gao, Nathalia Garcia, G. Giannoukos, C. Giblin, Maria Y. Giovanni, J. Goldberg, Johannes Goll, Antonio Gonzalez, Allison D. Griggs, Sharvari Gujja, S. Haake, B. Haas, Holli A. Hamilton, Emily L. Harris, Theresa A. Hepburn, Brandi N. Herter, D. Hoffmann, M. Holder, Clinton Howarth, Katherine H. Huang, Susan M. Huse, J. Izard, J. Jansson, Huaiyang Jiang, Catherine Jordan, Vandita Joshi, J. Katancik, W. Keitel, S. Kelley, C. Kells, N. King, D. Knights, H. Kong, O. Koren, S. Koren, Karthik Kota, C. Kovar, N. Kyrpides, P. S. Rosa, Sandy Lee, K. P. Lemon, N. Lennon, Cecil M. Lewis, L. Lewis, R. Ley, Kelvin Li, K. Liolios, Bo Liu, Yue Liu, C. Lo, C. Lozupone, R. Lunsford, T. Madden, A. Mahurkar, P. Mannon, E. Mardis, V. Markowitz, K. Mavromatis, J. McCorrison, Daniel McDonald, J. Mcewen, A. McGuire, P. Mcinnes, Teena Mehta, K. Mihindukulasuriya, J. Miller, P. Minx, I. Newsham, C. Nusbaum, M. O'Laughlin, Joshua Orvis, I. Pagani, Krishna Palaniappan, Shital M. Patel, Matthew D. Pearson, Jane L. Peterson, M. Podar, C. Pohl, K. Pollard, Mihai Pop, M. Priest, L. Proctor, X. Qin, J. Raes, J. Ravel, J. Reid, Mina Rho, R. Rhodes, Kevin P. Riehle, M. Rivera, B. Rodriguez-Mueller, Y. Rogers, M. C. Ross, C. Russ, Ravi K. Sanka, P. Sankar, J. Sathirapongsasuti, J. Schloss, P. Schloss, T. Schmidt, M. Scholz, L. Schriml, Alyxandria M. Schubert, N. Segata, J. Segre, W. Shannon, R. Sharp, T. Sharpton, N. Shenoy, N. Sheth, Gina A. Simone, Indresh Singh, C. Smillie, J. Sobel, Daniel D. Sommer, P. Spicer, G. Sutton, S. Sykes, D. Tabbaa, M. Thiagarajan, Chad Tomlinson, M. Torralba, Todd J. Treangen, R. Truty, T. Vishnivetskaya, Jason R. Walker, Lu Wang, Zhengyuan O. Wang, D. Ward, W. Warren, M. Watson, Christopher Wellington, K. Wetterstrand, J. White, Katarzyna Wilczek-Boney, Yuanqing Wu, K. Wylie, T. Wylie, C. Yandava, Liang Ye, Yuzhen Ye, Shibu Yooseph, Bonnie P. Youmans, Lan Zhang, Yanjiao Zhou, Yiming Zhu, L. Zoloth, Jeremy D. Zucker, B. Birren, R. Gibbs, S. Highlander, B. MethΓ©, K. Nelson, J. Petrosino, G. Weinstock, R. Wilson, O. White
13 2012
13
🐜
🦁 De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
23 auth. B. Haas, A. Papanicolaou, M. Yassour, M. Grabherr, Philip D. Blood, Joshua C. Bowden, M. B. Couger, David A. Eccles, Bo Li, Matthias Lieber, ... M. MacManes, M. Ott, Joshua Orvis, N. Pochet, F. Strozzi, N. Weeks, R. Westerman, T. William, Colin N. Dewey, R. Henschel, Richard D. LeDuc, N. Friedman, A. Regev
12 2013
12
🦁
🐜 Trinity : reconstructing a full-length transcriptome without a genome from RNA-Seq data
21 auth. M. Grabherr, B. Haas, M. Yassour, J. Levin, Dawn A Thompson, I. Amit, Xian Adiconis, Lin Fan, R. Raychowdhury, Qiandong Zeng, ... Zehua Chen, E. Mauceli, N. Hacohen, A. Gnirke, Nicholas Rhind, Federica Di Palma, B. Birren, C. Nusbaum, K. Lindblad-Toh, N. Friedman, A. Regev
12 2016
12
🐜
🦁 Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons.
15 auth. B. Haas, D. Gevers, A. Earl, M. Feldgarden, D. Ward, G. Giannoukos, Dawn M. Ciulla, D. Tabbaa, S. Highlander, E. Sodergren, ... B. MethΓ©, T. DeSantis, J. Petrosino, R. Knight, B. Birren
11 2011
11
🦁
🦁 Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
10 auth. B. Haas, S. Salzberg, Wei Zhu, Mihaela, Pertea, Jonathan E. Allen, ... Joshua Orvis, O. White, C. Buell, J. Wortman
11 2007
11
🦁
🐜 Next-generation characterization of the Cancer Cell Line Encyclopedia
68 auth. M. Ghandi, F. Huang, Judit JanΓ©-Valbuena, G. Kryukov, Christopher C. Lo, E. McDonald, J. Barretina, Ellen T. Gelfand, C. Bielski, Haoxin Li, K. Hu, Alexander Y. Andreev-Drakhlin, Jaegil Kim, J. Hess, B. Haas, ... F. Aguet, B. Weir, M. Rothberg, B. Paolella, M. Lawrence, Rehan Akbani, Yiling Lu, Hong L. Tiv, P. Gokhale, Antoine de Weck, Ali Amin Mansour, Coyin Oh, J. Shih, Kevin Hadi, Yanay Rosen, J. Bistline, K. Venkatesan, Anupama Reddy, D. Sonkin, Manway Liu, J. LehΓ‘r, Joshua M. Korn, D. Porter, Michael D. Jones, J. Golji, G. Caponigro, Jordan E. Taylor, C. Dunning, Amanda L. Creech, Allison C. Warren, James M. McFarland, Mahdi Zamanighomi, A. Kauffmann, Nicolas Stransky, M. ImieliΕ„ski, Y. Maruvka, A. Cherniack, Aviad Tsherniak, F. Vazquez, Jacob D. Jaffe, A. Lane, D. Weinstock, Cory M. Johannessen, Michael P. Morrissey, F. Stegmeier, R. Schlegel, W. Hahn, G. Getz, G. Mills, J. Boehm, T. Golub, L. Garraway, W. Sellers
11 2019
11
🐜
🐜 A framework for human microbiome research
248 auth. B. MethΓ©, K. Nelson, Mihai Pop, H. Creasy, M. Giglio, C. Huttenhower, D. Gevers, J. Petrosino, Sahar Abubucker, J. Badger, A. Chinwalla, A. Earl, Michael G. Fitzgerald, R. Fulton, Kymberlie Hallsworth-Pepin, ... E. Lobos, R. Madupu, V. Magrini, John C. Martin, M. Mitreva, D. Muzny, E. Sodergren, J. Versalovic, A. Wollam, K. Worley, J. Wortman, Sarah K. Young, Qiandong Zeng, K. Aagaard, Olukemi O. Abolude, E. Allen-Vercoe, E. Alm, Lucia Alvarado, G. Andersen, S. Anderson, Elizabeth L. Appelbaum, H. Arachchi, G. Armitage, Cesar Arze, T. Ayvaz, Carl C. Baker, L. Begg, Tsegahiwot Belachew, Veena Bhonagiri, Monika Bihan, M. Blaser, Toby Bloom, J. Vivien Bonazzi, Paul Brooks, G. Buck, C. Buhay, D. Busam, Joseph L. Campbell, S. Canon, B. Cantarel, P. Chain, I. Chen, Lei Chen, Shaila Chhibba, Ken Chu, Dawn M. Ciulla, J. Clemente, S. Clifton, S. Conlan, J. Crabtree, M. Cutting, Noam J. Davidovics, Catherine C. Davis, T. DeSantis, C. Deal, Kimberley D. Delehaunty, F. Dewhirst, E. Deych, Yan Ding, D. Dooling, Shannon P. Dugan, W. Dunne, A. S. Durkin, Robert C. Edgar, R. Erlich, Candace N. Farmer, R. Farrell, Karoline Faust, M. Feldgarden, Victor Felix, Sheila A Fisher, A. Fodor, L. Forney, Les Foster, V. Di Francesco, Jonathan Friedman, Dennis C. Friedrich, C. Fronick, L. Fulton, Hongyu Gao, Nathalia Garcia, G. Giannoukos, C. Giblin, Maria Y. Giovanni, J. Goldberg, Johannes Goll, Antonio Gonzalez, Allison D. Griggs, Sharvari Gujja, B. Haas, Holli A. Hamilton, Emily L. Harris, Theresa A. Hepburn, Brandi N. Herter, D. Hoffmann, M. Holder, Clinton Howarth, Katherine H. Huang, Susan M. Huse, J. Izard, J. Jansson, Huaiyang Jiang, Catherine Jordan, Vandita Joshi, J. Katancik, W. Keitel, S. Kelley, C. Kells, Susan Kinder-Haake, N. King, R. Knight, D. Knights, H. Kong, O. Koren, S. Koren, Karthik Kota, C. Kovar, N. Kyrpides, Patricio S. La Rosa, Sandy Lee, K. P. Lemon, N. Lennon, Cecil M. Lewis, L. Lewis, R. Ley, Kelvin Li, K. Liolios, Bo Liu, Yue Liu, C. Lo, C. Lozupone, R. Lunsford, T. Madden, A. Mahurkar, P. Mannon, E. Mardis, V. Markowitz, K. Mavrommatis, J. McCorrison, Daniel McDonald, J. Mcewen, A. McGuire, P. Mcinnes, Teena Mehta, K. Mihindukulasuriya, J. Miller, P. Minx, I. Newsham, C. Nusbaum, M. O'Laughlin, Joshua Orvis, I. Pagani, Krishna Palaniappan, Shital M. Patel, Matthew D. Pearson, Jane L. Peterson, M. Podar, C. Pohl, K. Pollard, M. Priest, L. Proctor, X. Qin, J. Raes, J. Ravel, J. Reid, Mina Rho, R. Rhodes, Kevin P. Riehle, M. Rivera, B. Rodriguez-Mueller, Y. Rogers, M. C. Ross, C. Russ, Ravi K. Sanka, J. Pamela Sankar, Fah Sathirapongsasuti, J. Schloss, P. Schloss, T. Schmidt, M. Scholz, L. Schriml, Alyxandria M. Schubert, N. Segata, J. Segre, W. Shannon, R. Sharp, T. Sharpton, N. Shenoy, N. Sheth, Gina A. Simone, Indresh Singh, C. Smillie, J. Sobel, Daniel D. Sommer, P. Spicer, G. Sutton, S. Sykes, D. Tabbaa, M. Thiagarajan, Chad Tomlinson, M. Torralba, Todd J. Treangen, R. Truty, T. Vishnivetskaya, Jason R. Walker, Lu Wang, Zhengyuan O. Wang, D. Ward, W. Warren, M. Watson, Christopher Wellington, K. Wetterstrand, J. White, Katarzyna Wilczek-Boney, Yuanqing Wu, K. Wylie, T. Wylie, C. Yandava, Liang Ye, Yuzhen Ye, Shibu Yooseph, Bonnie P. Youmans, Lan Zhang, Yanjiao Zhou, Yiming Zhu, L. Zoloth, Jeremy D. Zucker, B. Birren, R. Gibbs, S. Highlander, G. Weinstock, R. Wilson, O. White
11 2012
11
🐜
🦁 Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies.
12 auth. B. Haas, A. Delcher, Stephen M. Mount, J. Wortman, R. Smith, L. Hannick, ... R. Maiti, C. Ronning, D. Rusch, C. Town, S. Salzberg, O. White
10 2003
10
🦁
🐜 The Genome of the African Trypanosome Trypanosoma brucei
102 auth. M. Berriman, E. Ghedin, C. Hertz-Fowler, G. Blandin, H. Renauld, D. Bartholomeu, Nicola J Lennard, E. Caler, N. Hamlin, B. Haas, U. BΓΆhme, L. Hannick, M. Aslett, J. Shallom, Lucio Marcello, ... Li-li Hou, B. Wickstead, U. Alsmark, C. Arrowsmith, R. Atkin, Andrew J Barron, F. Bringaud, K. Brooks, M. Carrington, Inna Cherevach, T. Chillingworth, C. Churcher, L. Clark, C. Corton, A. Cronin, R. Davies, J. Doggett, A. Djikeng, T. Feldblyum, Mark C. Field, A. Fraser, I. Goodhead, Z. Hance, D. Harper, B. Harris, H. Hauser, J. Hostetler, A. Ivens, K. Jagels, David C Johnson, Justin Johnson, Kristine Jones, A. Kerhornou, H. Koo, N. Larke, S. Landfear, C. Larkin, V. Leech, A. Line, Angela Lord, A. MacLeod, P. Mooney, S. Moule, David M. A. Martin, G. Morgan, K. Mungall, H. Norbertczak, D. Ormond, G. Pai, C. Peacock, J. Peterson, M. Quail, E. Rabbinowitsch, M. Rajandream, C. Reitter, S. Salzberg, M. Sanders, S. Schobel, S. Sharp, M. Simmonds, A. J. Simpson, L. Tallon, C. Turner, A. Tait, A. Tivey, S. V. Van Aken, D. Walker, D. Wanless, Shiliang Wang, Brian White, O. White, S. Whitehead, J. Woodward, J. Wortman, M. Adams, T. Embley, K. Gull, E. Ullu, J. Barry, A. Fairlamb, F. Opperdoes, B. Barrell, J. Donelson, N. Hall, C. Fraser, S. Melville, N. El-Sayed
10 2005
10
🐜
🦁 Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans
96 auth. B. Haas, S. Kamoun, M. Zody, R. Jiang, R. Handsaker, L. Cano, M. Grabherr, C. Kodira, S. Raffaele, T. Torto-Alalibo, T. Bozkurt, Audrey M. V. Ah-Fong, Lucia Alvarado, Victoria L. Anderson, M. Armstrong, ... A. Avrova, L. Baxter, J. Beynon, P. Boevink, Stephanie R. Bollmann, J. Bos, V. Bulone, G. Cai, C. Cakir, J. C. Carrington, M. Chawner, Lucio Conti, S. Costanzo, R. Ewan, N. Fahlgren, M. Fischbach, Johanna Fugelstad, Eleanor M. Gilroy, S. Gnerre, P. Green, L. Grenville-Briggs, J. Griffith, N. GrΓΌnwald, K. Horn, Neil R. Horner, Chia-Hui Hu, E. Huitema, D. Jeong, Alexandra M. E. Jones, Jonathan D. G. Jones, Richard W. Jones, E. Karlsson, Sridhara G. Kunjeti, K. Lamour, Zhenyu Liu, Li‐Jun Ma, D. MacLean, M. Chibucos, Hayes W. McDonald, J. McWalters, H. Meijer, W. Morgan, P. Morris, C. Munro, K. O'Neill, M. Ospina-Giraldo, A. PinzΓ³n, L. Pritchard, B. Ramsahoye, Q. Ren, S. Restrepo, Sourav Roy, A. Sadanandom, A. Savidor, S. Schornack, D. Schwartz, Ulrike Schumann, B. Schwessinger, L. Seyer, Ted Sharpe, C. Silvar, Jing Song, D. Studholme, S. Sykes, M. Thines, P. V. D. Vondervoort, V. Phuntumart, Stephan Wawra, R. Weide, J. Win, C. Young, Shiguo Zhou, W. Fry, B. Meyers, P. West, J. Ristaino, F. Govers, P. Birch, S. Whisson, H. Judelson, C. Nusbaum
10 2009
10
🦁
🐜 Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus
98 auth. W. Nierman, A. Pain, M. Anderson, J. Wortman, H. Kim, J. Arroyo, M. Berriman, Keietsu Abe, D. Archer, Clara Bermejo, J. Bennett, P. Bowyer, Dan Chen, M. Collins, Richard Coulsen, ... R. Davies, P. Dyer, M. Farman, N. Fedorova, N. Fedorova, T. Feldblyum, R. Fischer, Nigel Fosker, A. Fraser, JosΓ© L. GarcΓ­a, M. J. GarcΓ­a, A. Goble, G. Goldman, K. Gomi, S. Griffith-Jones, R. Gwilliam, B. Haas, H. Haas, D. Harris, H. Horiuchi, Jiaqi Huang, S. Humphray, J. JimΓ©nez, N. Keller, H. Khouri, K. Kitamoto, Tetsuo Kobayashi, S. Konzack, R. Kulkarni, Toshitaka Kumagai, Anne Lafton, J. LatgΓ©, Weixi Li, Angela Lord, Charles Lu, William H. Majoros, G. May, B. Miller, Y. Mohamoud, M. Molina, M. Monod, I. Mouyna, Stephanie Mulligan, L. Murphy, S. O'neil, I. Paulsen, M. PeΓ±alva, M. PerΘ›ea, C. Price, B. Pritchard, M. Quail, E. Rabbinowitsch, N. Rawlins, M. Rajandream, U. Reichard, H. Renauld, G. Robson, S. R. CΓ³rdoba, J. M. RodrΓ­guez-PeΓ±a, C. Ronning, S. Rutter, S. Salzberg, M. SΓ‘nchez, J. Sanchez-Ferrero, D. Saunders, K. Seeger, R. Squares, S. Squares, M. Takeuchi, F. Tekaia, G. Turner, C. D. V. Aldana, J. Weidman, O. White, J. Woodward, Jae-Hyuk Yu, C. Fraser, J. Galagan, K. Asai, M. Machida, N. Hall, B. Barrell, D. Denning
10 2005
10
🐜
🐜 The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease
82 auth. N. El-Sayed, P. Myler, D. Bartholomeu, D. Nilsson, Gautam Aggarwal, A. Tran, E. Ghedin, E. Worthey, A. Delcher, G. Blandin, S. Westenberger, E. Caler, G. Cerqueira, C. Branche, B. Haas, ... Atashi Anupama, E. Arner, L. Åslund, Philip Attipoe, E. Bontempi, F. Bringaud, P. Burton, Eithon Cadag, D. Campbell, M. Carrington, J. Crabtree, H. Darban, J. F. da Silveira, P. D. de Jong, K. Edwards, P. T. Englund, Gholam Fazelina, T. Feldblyum, Marcela Ferella, A. Frasch, K. Gull, D. Horn, Li-li Hou, Yiting Huang, Ellen Kindlund, M. Klingbeil, Sindy Kluge, H. Koo, D. Lacerda, M. Levin, H. Lorenzi, T. Louie, C. R. Machado, R. McCulloch, A. McKenna, Yumi Mizuno, J. Mottram, Siri O Nelson, Stephen Ochaya, K. Osoegawa, G. Pai, M. Parsons, Martin J. Pentony, U. Pettersson, Mihai Pop, J. Ramírez, J. Rinta, Laura Robertson, S. Salzberg, D. SÑnchez, Amber Seyler, R. Sharma, Jyoti Shetty, A. J. Simpson, E. Sisk, M. Tammi, R. Tarleton, S. Teixeira, S. V. Van Aken, Christy Vogt, Pauline Ward, B. Wickstead, J. Wortman, O. White, C. Fraser, K. Stuart, B. Andersson
10 2005
10
🐜
🐜 The TIGR Rice Genome Annotation Resource: improvements and new features
14 auth. S. Ouyang, Wei Zhu, John A. Hamilton, Haining Lin, M. Campbell, K. Childs, F. Thibaud-Nissen, R. Malek, Yuandan Lee, Li Zheng, ... Joshua Orvis, B. Haas, J. Wortman, C. R. Buell
10 2006
10
🐜
🐜 Genome Sequence of Aedes aegypti, a Major Arbovirus Vector
102 auth. V. Nene, J. Wortman, D. Lawson, B. Haas, C. Kodira, Z. Tu, B. Loftus, B. Loftus, Z. Xi, K. Megy, M. Grabherr, Quinghu Ren, E. Zdobnov, E. Zdobnov, E. Zdobnov, ... N. Lobo, K. S. Campbell, Susan E. Brown, M. F. Bonaldo, Jingsong Zhu, S. Sinkins, D. Hogenkamp, P. Amedeo, Peter Arensburger, P. Atkinson, Shelby L. Bidwell, J. Biedler, E. Birney, R. Bruggner, J. Costas, M. Coy, J. Crabtree, Matt Crawford, B. Debruyn, David DeCaprio, K. Eiglmeier, E. Eisenstadt, H. El-Dorry, W. Gelbart, S. Gomes, M. Hammond, L. Hannick, J. Hogan, M. Holmes, D. Jaffe, J. Johnston, R. Kennedy, H. Koo, S. Kravitz, E. Kriventseva, D. Kulp, K. Labutti, Eduardo Lee, Song Li, Diane D. Lovin, Chunhong Mao, E. Mauceli, C. Menck, J. Miller, Philip Montgomery, A. Mori, A. L. Nascimento, H. Naveira, C. Nusbaum, Sinead B. O'Leary, Joshua Orvis, M. PerΘ›ea, H. Quesneville, Kyanne R. Reidenbach, Y. Rogers, C. Roth, J. R. Schneider, M. Schatz, M. Schatz, Martin Shumway, M. Stanke, M. Stanke, Eric O. Stinson, J. TubΓ­o, J. P. Vanzee, S. Verjovski-Almeida, D. Werner, O. White, S. Wyder, Qiandong Zeng, Qi Zhao, Yongmei Zhao, C. Hill, A. Raikhel, M. Soares, D. Knudson, N. Lee, N. Lee, J. Galagan, S. Salzberg, I. Paulsen, G. Dimopoulos, F. Collins, B. Birren, Claire Fraser-Liggett, Claire Fraser-Liggett, D. Severson
10 2007
10
🐜