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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simão,
Robert M. Waterhouse,
P. Ioannidis,
E. Kriventseva,
E. Zdobnov
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13 |
2015 |
13
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BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics
8 auth.
Robert M. Waterhouse,
M. Seppey,
Felipe A. Simão,
M. Manni,
P. Ioannidis,
Guennadi Klioutchnikov,
...
E. Kriventseva,
E. Zdobnov
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10 |
2017 |
10
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The genome of the model beetle and pest Tribolium castaneum
191 auth.
S. Richards,
R. Gibbs,
G. Weinstock,
Susan J. Brown,
R. Denell,
R. Beeman,
R. Gibbs,
Gregor Bucher,
M. Friedrich,
C. Grimmelikhuijzen,
M. Klingler,
M. Lorenzen,
S. Roth,
Reinhard Schröder,
D. Tautz,
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E. Zdobnov,
D. Muzny,
Tony Attaway,
S. Bell,
C. Buhay,
Mimi N. Chandrabose,
Dean Chavez,
Kerstin P Clerk-Blankenburg,
Andrew Cree,
M. Dao,
Clay Davis,
J. Chacko,
H. Dinh,
S. Dugan-Rocha,
G. Fowler,
Toni T. Garner,
J. Garnes,
A. Gnirke,
A. Hawes,
Judith Hernandez,
S. Hines,
M. Holder,
J. Hume,
S. Jhangiani,
Vandita Joshi,
Ziad Khan,
L. Jackson,
C. Kovar,
Andrea Kowis,
Sandy Lee,
L. Lewis,
J. Margolis,
M. Morgan,
L. Nazareth,
N. Nguyen,
Geoffrey Okwuonu,
David Parker,
S. Ruiz,
J. Santibanez,
Joël Savard,
S. Scherer,
Brian Schneider,
E. Sodergren,
Selina Vattahil,
D. Villasana,
Courtney S White,
Rita A. Wright,
Yoonseong Park,
J. Lord,
B. Oppert,
Sue Brown,
Liangjiang Wang,
G. Weinstock,
Yue Liu,
K. Worley,
C. Elsik,
J. Reese,
E. Elhaik,
Giddy Landan,
D. Graur,
Peter Arensburger,
P. Atkinson,
Jim Beidler,
Jeffery P. Demuth,
D. W. Drury,
Yu-Zhou Du,
H. Fujiwara,
V. Maselli,
Mizuko Osanai,
H. Robertson,
Z. Tu,
Jian-jun Wang,
Suzhi Wang,
H. Song,
Lan Zhang,
D. Werner,
M. Stanke,
B. Morgenstern,
Victor V. Solovyev,
P. Kosarev,
Garth R. Brown,
Hsiu-Chuan Chen,
O. Ermolaeva,
W. Hlavina,
Y. Kapustin,
B. Kiryutin,
P. Kitts,
D. Maglott,
K. Pruitt,
V. Sapojnikov,
A. Souvorov,
A. Mackey,
Robert M. Waterhouse,
S. Wyder,
E. Kriventseva,
T. Kadowaki,
P. Bork,
M. Aranda,
R. Bao,
A. Beermann,
N. Berns,
R. Bolognesi,
F. Bonneton,
D. Bopp,
T. Butts,
A. Chaumot,
R. Denell,
D. Ferrier,
Cassondra M Gordon,
M. Jindra,
Q. Lan,
H. Michael G. Lattorff,
V. Laudet,
Cornelia von Levetsow,
Zhenyi Liu,
R. Lutz,
Jeremy A. Lynch,
Rodrigo Nunes da Fonseca,
Nico Posnien,
R. Reuter,
Johannes B. Schinko,
Christian Schmitt,
M. Schoppmeier,
T. Shippy,
Franck Simonnet,
Henrique Marques-Souza,
Yoshinori Tomoyasu,
Jochen Trauner,
M. van der Zee,
Michel Vervoort,
Nadine Wittkopp,
E. Wimmer,
Xiaoyun Yang,
Andrew K. Jones,
D. Sattelle,
P. Ebert,
David R Nelson,
J. G. Scott,
S. Muthukrishnan,
K. Kramer,
Y. Arakane,
Qingsong Zhu,
D. Hogenkamp,
Radhika Dixit,
Haobo Jiang,
Z. Zou,
J. Marshall,
E. Elpidina,
K. Vinokurov,
C. Oppert,
J. Evans,
Zhiqiang Lu,
P. Zhao,
Niranji Sumathipala,
B. Altincicek,
A. Vilcinskas,
Michael Williams,
D. Hultmark,
C. Hétru,
F. Hauser,
Giuseppe Cazzamali,
M. Williamson,
Bin Li,
Yoshiaki Tanaka,
R. Predel,
S. Neupert,
J. Schachtner,
P. Verleyen,
F. Raible,
Kimberly K O Walden,
S. Angeli,
S. Forêt,
S. Schuetz,
R. Maleszka,
Sherry Miller,
Daniela Grossmann
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2008 |
10
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The Ecoresponsive Genome of Daphnia pulex
69 auth.
J. Colbourne,
M. Pfrender,
D. Gilbert,
W. Thomas,
Abraham E. Tucker,
Todd H. Oakley,
S. Tokishita,
A. Aerts,
G. Arnold,
M. K. Basu,
D. Bauer,
C. Cáceres,
L. Carmel,
C. Casola,
Jeong-Hyeon Choi,
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J. Detter,
Qunfeng Dong,
Serge Dusheyko,
B. Eads,
T. Fröhlich,
Kerry Geiler-Samerotte,
D. Gerlach,
P. Hatcher,
S. Jogdeo,
J. Krijgsveld,
E. Kriventseva,
D. Kültz,
C. Laforsch,
E. Lindquist,
Jacqueline Lopez,
J. Manak,
J. Muller,
Jasmyn Pangilinan,
Rupali Patwardhan,
Sam Pitluck,
Ellen J. Pritham,
A. Rechtsteiner,
Mina Rho,
I. Rogozin,
O. Sakarya,
A. Salamov,
S. Schaack,
H. Shapiro,
Y. Shiga,
Courtney A. Skalitzky,
Z. Smith,
Alexander Souvorov,
Way Sung,
Zuojian Tang,
D. Tsuchiya,
Hank Tu,
H. Vos,
Mei Wang,
Y. Wolf,
H. Yamagata,
Takuji Yamada,
Yuzhen Ye,
J. Shaw,
J. Andrews,
T. Crease,
Haixu Tang,
S. Lucas,
H. Robertson,
P. Bork,
E. Koonin,
E. Zdobnov,
I. Grigoriev,
M. Lynch,
J. Boore
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10 |
2011 |
10
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Genome Sequence of Aedes aegypti, a Major Arbovirus Vector
102 auth.
V. Nene,
J. Wortman,
D. Lawson,
B. Haas,
C. Kodira,
Z. Tu,
B. Loftus,
B. Loftus,
Z. Xi,
K. Megy,
M. Grabherr,
Quinghu Ren,
E. Zdobnov,
E. Zdobnov,
E. Zdobnov,
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N. Lobo,
K. S. Campbell,
Susan E. Brown,
M. F. Bonaldo,
Jingsong Zhu,
S. Sinkins,
D. Hogenkamp,
P. Amedeo,
Peter Arensburger,
P. Atkinson,
Shelby L. Bidwell,
J. Biedler,
E. Birney,
R. Bruggner,
J. Costas,
M. Coy,
J. Crabtree,
Matt Crawford,
B. Debruyn,
David DeCaprio,
K. Eiglmeier,
E. Eisenstadt,
H. El-Dorry,
W. Gelbart,
S. Gomes,
M. Hammond,
L. Hannick,
J. Hogan,
M. Holmes,
D. Jaffe,
J. Johnston,
R. Kennedy,
H. Koo,
S. Kravitz,
E. Kriventseva,
D. Kulp,
K. Labutti,
Eduardo Lee,
Song Li,
Diane D. Lovin,
Chunhong Mao,
E. Mauceli,
C. Menck,
J. Miller,
Philip Montgomery,
A. Mori,
A. L. Nascimento,
H. Naveira,
C. Nusbaum,
Sinead B. O'Leary,
Joshua Orvis,
M. Perțea,
H. Quesneville,
Kyanne R. Reidenbach,
Y. Rogers,
C. Roth,
J. R. Schneider,
M. Schatz,
M. Schatz,
Martin Shumway,
M. Stanke,
M. Stanke,
Eric O. Stinson,
J. Tubío,
J. P. Vanzee,
S. Verjovski-Almeida,
D. Werner,
O. White,
S. Wyder,
Qiandong Zeng,
Qi Zhao,
Yongmei Zhao,
C. Hill,
A. Raikhel,
M. Soares,
D. Knudson,
N. Lee,
N. Lee,
J. Galagan,
S. Salzberg,
I. Paulsen,
G. Dimopoulos,
F. Collins,
B. Birren,
Claire Fraser-Liggett,
Claire Fraser-Liggett,
D. Severson
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10 |
2007 |
10
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Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species
157 auth.
J. Werren,
S. Richards,
C. Desjardins,
O. Niehuis,
J. Gadau,
J. Colbourne,
L. Beukeboom,
C. Desplan,
C. Elsik,
C. Grimmelikhuijzen,
P. Kitts,
Jeremy A. Lynch,
T. Murphy,
D. C. S. G. Oliveira,
CHRISTOPHER D. Smith,
...
L. van de Zande,
K. Worley,
E. Zdobnov,
M. Aerts,
S. Albert,
V. Anaya,
J. Anzola,
A. Barchuk,
S. Behura,
A. N. Bera,
M. Berenbaum,
Rinaldo C. Bertossa,
M. M. Bitondi,
Seth R. Bordenstein,
P. Bork,
E. Bornberg-Bauer,
Marleen Brunain,
Giuseppe Cazzamali,
Lesley S. Chaboub,
J. Chacko,
Dean Chavez,
C. Childers,
Jeong-Hyeon Choi,
M. E. Clark,
C. Claudianos,
R. A. Clinton,
Andrew Cree,
A. Cristino,
P. Dang,
A. Darby,
D. D. de Graaf,
B. Devreese,
H. Dinh,
R. Edwards,
Navin Elango,
E. Elhaik,
O. Ermolaeva,
J. Evans,
S. Forêt,
G. Fowler,
D. Gerlach,
J. D. Gibson,
D. Gilbert,
D. Graur,
S. Gründer,
D. Hagen,
Yi Han,
F. Hauser,
D. Hultmark,
H. C. Hunter,
G. Hurst,
Shalini N. Jhangian,
Huaiyang Jiang,
Reed M. Johnson,
Andrew K. Jones,
Thomas Junier,
T. Kadowaki,
A. Kamping,
Y. Kapustin,
B. Kechavarzi,
Jaebum Kim,
Jay W. Kim,
B. Kiryutin,
T. Koevoets,
C. Kovar,
E. Kriventseva,
R. Kucharski,
Heewook Lee,
Sandy Lee,
K. Lees,
L. Lewis,
David W. Loehlin,
J. Logsdon,
Jacqueline Lopez,
R. Lozado,
D. Maglott,
R. Maleszka,
A. Mayampurath,
D. Mazur,
M. A. McClure,
Andrew D. Moore,
M. Morgan,
J. Muller,
M. Munoz-Torres,
D. Muzny,
L. Nazareth,
S. Neupert,
N. Nguyen,
F. M. Nunes,
J. Oakeshott,
Geoffrey Okwuonu,
B. Pannebakker,
V. Pejaver,
Zuogang Peng,
S. Pratt,
R. Predel,
ling-ling Pu,
H. Ranson,
Rhitoban Raychoudhury,
A. Rechtsteiner,
J. Reese,
J. Reid,
Megan C Riddle,
H. Robertson,
J. Romero‐Severson,
M. Rosenberg,
Timothy B Sackton,
D. Sattelle,
H. Schlüns,
T. Schmitt,
Martina Schneider,
A. Schüler,
A. Schurko,
D. Shuker,
Z. Simões,
S. Sinha,
Z. Smith,
Victor V. Solovyev,
A. Souvorov,
Andreas Springauf,
Elisabeth Stafflinger,
D. Stage,
M. Stanke,
Yoshiaki Tanaka,
A. Telschow,
C. Trent,
Selina M. Vattathil,
E. Verhulst,
L. Viljakainen,
K. Wanner,
Robert M. Waterhouse,
J. Whitfield,
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M. Williamson,
J. H. Willis,
F. Wolschin,
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Takuji Yamada,
S. Yi,
Courtney N. Zecher,
Lan Zhang,
R. Gibbs
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9 |
2010 |
9
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OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs
7 auth.
E. Kriventseva,
D. Kuznetsov,
F. Tegenfeldt,
M. Manni,
R. Dias,
Felipe A. Simão,
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E. Zdobnov
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9 |
2018 |
9
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Evolutionary Dynamics of Immune-Related Genes and Pathways in Disease-Vector Mosquitoes
35 auth.
Robert M. Waterhouse,
E. Kriventseva,
S. Meister,
Z. Xi,
Kanwal S. Alvarez,
L. Bartholomay,
C. Barillas-Mury,
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M. Kanost,
A. Koutsos,
E. Levashina,
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P. Ligoxygakis,
R. MacCallum,
G. Mayhew,
A. Mendes,
K. Michel,
M. Osta,
S. Paskewitz,
S. Shin,
D. Vlachou,
Lihui Wang,
Weiqi Wei,
Liangbiao Zheng,
Z. Zou,
D. Severson,
A. Raikhel,
F. Kafatos,
G. Dimopoulos,
E. Zdobnov,
G. Christophides
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9 |
2007 |
9
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Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle
71 auth.
E. Kirkness,
B. Haas,
Weilin Sun,
H. Braig,
M. A. Perotti,
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H. Robertson,
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D. Gerlach,
E. Kriventseva,
C. Elsik,
D. Graur,
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J. Veenstra,
B. Walenz,
J. Tubío,
J. Ribeiro,
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J. Johnston,
J. Reese,
Aleksandar Popadić,
M. Tojo,
D. Raoult,
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V. Margam,
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Reed M. Johnson,
J. Romero‐Severson,
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F. G. Vieira,
M. Aguadé,
S. Guirao-Rico,
J. Anzola,
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J. Strycharz,
M. Unger,
S. Christley,
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G. Dasch,
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V. Joardar,
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T. Utterback,
G. Sutton,
D. Lawson,
Robert M. Waterhouse,
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R. Strausberg,
M. Berenbaum,
F. Collins,
E. Zdobnov,
B. Pittendrigh
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9 |
2010 |
9
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OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs
9 auth.
E. Zdobnov,
F. Tegenfeldt,
D. Kuznetsov,
Robert M. Waterhouse,
Felipe A. Simão,
P. Ioannidis,
...
M. Seppey,
Alexis Loetscher,
E. Kriventseva
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8 |
2016 |
8
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OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs
Robert M. Waterhouse,
F. Tegenfeldt,
Jia Li,
E. Zdobnov,
E. Kriventseva
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8 |
2012 |
8
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OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software
8 auth.
E. Kriventseva,
F. Tegenfeldt,
Tom J. Petty,
Robert M. Waterhouse,
Felipe A. Simão,
Igor A. Pozdnyakov,
...
P. Ioannidis,
E. Zdobnov
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8 |
2014 |
8
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Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality
38 auth.
D. Simola,
Lothar Wissler,
G. Donahue,
Robert M. Waterhouse,
M. Helmkampf,
Julien Roux,
S. Nygaard,
Karl M. Glastad,
D. Hagen,
L. Viljakainen,
J. Reese,
B. Hunt,
D. Graur,
E. Elhaik,
E. Kriventseva,
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Jiayu Wen,
B. Parker,
E. Cash,
Eyal Privman,
C. Childers,
M. Munoz-Torres,
J. Boomsma,
E. Bornberg-Bauer,
C. Currie,
C. Elsik,
G. Suen,
M. Goodisman,
L. Keller,
J. Liebig,
A. Rawls,
D. Reinberg,
Chris D. Smith,
Chris C. R. Smith,
N. Tsutsui,
Y. Wurm,
E. Zdobnov,
S. Berger,
J. Gadau
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7 |
2013 |
7
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Increase of functional diversity by alternative splicing.
7 auth.
E. Kriventseva,
I. Koch,
R. Apweiler,
M. Vingron,
P. Bork,
M. Gelfand,
...
S. Sunyaev
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7 |
2003 |
7
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