|
๐
|
Direct detection of early-stage cancers using circulating tumor DNA
37 auth.
J. Phallen,
M. Sausen,
V. Adleff,
A. Leal,
C. Hruban,
J. White,
V. Anagnostou,
J. Fiksel,
S. Cristiano,
E. Papp,
S. Speir,
T. Reinert,
Mai-Britt Worm Orntoft,
Brian D Woodward,
D. Murphy,
...
S. Parpart-Li,
David R. Riley,
Monica Nesselbush,
Naomi A. Sengamalay,
Andrew P. Georgiadis,
Q. K. Li,
M. Madsen,
F. Mortensen,
J. Huiskens,
C. Punt,
N. V. van Grieken,
R. Fijneman,
G. Meijer,
H. Husain,
R. Scharpf,
L. Diaz,
Siaฬn Jones,
Samuel V. Angiuoli,
T. รrntoft,
H. Nielsen,
C. Andersen,
V. Velculescu
|
9 |
2017 |
9
๐
|
|
๐
|
Evolution of Neoantigen Landscape during Immune Checkpoint Blockade in Non-Small Cell Lung Cancer.
29 auth.
V. Anagnostou,
Kellie N. Smith,
P. Forde,
N. Niknafs,
Rohit Bhattacharya,
J. White,
Theresa Zhang,
V. Adleff,
J. Phallen,
N. Wali,
C. Hruban,
V. Guthrie,
Kristen Rodgers,
J. Naidoo,
Hyunseok Kang,
...
W. Sharfman,
C. Georgiades,
Franco Verde,
P. Illei,
Q. K. Li,
E. Gabrielson,
M. Brock,
C. Zahnow,
S. Baylin,
R. Scharpf,
J. Brahmer,
R. Karchin,
D. Pardoll,
V. Velculescu
|
9 |
2017 |
9
๐
|
|
๐
|
Control of PD-L1 Expression by Oncogenic Activation of the AKT-mTOR Pathway in Non-Small Cell Lung Cancer.
13 auth.
Kristin J. Lastwika,
W. Wilson,
Q. K. Li,
J. Norris,
Haiying Xu,
S. Ghazarian,
H. Kitagawa,
S. Kawabata,
J. Taube,
Sheng Yao,
...
Linda N. Liu,
Joell J. Gills,
P. Dennis
|
9 |
2016 |
9
๐
|
|
๐ข
|
Current WHO guidelines and the critical role of immunohistochemical markers in the subclassification of non-small cell lung carcinoma (NSCLC): Moving from targeted therapy to immunotherapy.
Lais Osmani,
F. Askin,
E. Gabrielson,
Q. K. Li
|
9 |
2017 |
9
๐ข
|
|
๐
|
Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma
80 auth.
D. Clark,
S. Dhanasekaran,
F. Petralia,
Jianbo Pan,
Xiaoyu Song,
Yingwei Hu,
Felipe da Veiga Leprevost,
B. Reva,
T. Lih,
Hui-Yin Chang,
Weiping Ma,
Chen Huang,
C. Ricketts,
Lijun Chen,
A. Krek,
...
Yize Li,
Dmitry Rykunov,
Q. K. Li,
Lin S. Chen,
U. Ozbek,
S. Vasaikar,
Yige Wu,
S. Yoo,
Shrabanti Chowdhury,
Matthew A. Wyczalkowski,
Jiayi Ji,
M. Schnaubelt,
Andy T. Kong,
Sunantha Sethuraman,
D. Avtonomov,
Minghui Ao,
A. Colaprico,
Song Cao,
Kyung-Cho Cho,
Selim Kalayci,
Shiyong Ma,
Wenke Liu,
Kelly V. Ruggles,
A. Calinawan,
Z. Gรผmรผล,
Daniel J. Geiszler,
Emily A. Kawaler,
Guo Ci Teo,
Bo Wen,
Yuping Zhang,
Sarah Keegan,
Kai Li,
Feng Chen,
N. Edwards,
P. Pierorazio,
Xi Chen,
C. Pavlovich,
A. Hakimi,
G. Bromiลski,
J. Hsieh,
A. Antczak,
T. Omelchenko,
J. Lubiลski,
M. Wiznerowicz,
W. Linehan,
C. Kinsinger,
M. Thiagarajan,
Emily Boja,
M. Mesri,
Tara Hiltke,
A. Robles,
H. Rodriguez,
Jiang Qian,
D. Fenyรถ,
Bing Zhang,
L. Ding,
E. Schadt,
A. Chinnaiyan,
Zhen Zhang,
G. Omenn,
M. Cieslik,
D. Chan,
A. Nesvizhskii,
Pei Wang,
Hui Zhang
|
8 |
2019 |
8
๐
|
|
๐
|
Prevalence of the alternative lengthening of telomeres telomere maintenance mechanism in human cancer subtypes.
26 auth.
C. Heaphy,
A. Subhawong,
SeungโMo Hong,
M. Goggins,
E. Montgomery,
E. Gabrielson,
G. Netto,
J. Epstein,
T. Lotan,
W. Westra,
I. Shih,
C. Iacobuzio-Donahue,
A. Maitra,
A. Maitra,
Q. K. Li,
...
C. Eberhart,
J. Taube,
D. Rakheja,
R. Kurman,
T. Wu,
R. Roden,
P. Argani,
A. Marzo,
L. Terracciano,
M. Torbenson,
A. Meeker
|
8 |
2011 |
8
๐
|
|
๐
|
The Genomic Landscape of Response to EGFR Blockade in Colorectal Cancer
35 auth.
A. Bertotti,
E. Papp,
Siaฬn Jones,
V. Adleff,
V. Anagnostou,
B. Lupo,
M. Sausen,
J. Phallen,
C. Hruban,
Collin J Tokheim,
N. Niknafs,
Monica Nesselbush,
Karli Lytle,
F. Sassi,
F. Cottino,
...
Giorgia Migliardi,
E. Zanella,
D. Ribero,
N. Russolillo,
A. Mellano,
A. Muratore,
G. Paraluppi,
M. Salizzoni,
S. Marsoni,
M. Kragh,
J. Lantto,
A. Cassingena,
Q. K. Li,
R. Karchin,
R. Scharpf,
A. Sartore-Bianchi,
S. Siena,
L. Diaz,
L. Trusolino,
V. Velculescu
|
8 |
2015 |
8
๐
|
|
๐
|
Proteogenomic and metabolomic characterization of human glioblastoma.
88 auth.
Liang-Bo Wang,
A. Karpova,
M. Gritsenko,
J. Kyle,
Song Cao,
Yize Li,
Dmitry Rykunov,
A. Colaprico,
J. Rothstein,
R. Hong,
Vasileios Stathias,
MacIntosh G. Cornwell,
F. Petralia,
Yige Wu,
B. Reva,
...
Karsten Krug,
Pietro Pugliese,
Emily A. Kawaler,
Lindsey K. Olsen,
Wen-Wei Liang,
Xiaoyu Song,
Yongchao Dou,
M. Wendl,
Wagma Caravan,
Wenke Liu,
Daniel Cui Zhou,
Jiayi Ji,
Chia-Feng Tsai,
V. Petyuk,
Jamie Moon,
Weiping Ma,
R. Chu,
K. Weitz,
Ronald J. Moore,
M. Monroe,
R. Zhao,
Xiaolu Yang,
S. Yoo,
A. Krek,
A. Demopoulos,
Houxiang Zhu,
Matthew A. Wyczalkowski,
Joshua F. McMichael,
B. L. Henderson,
Caleb M Lindgren,
Hannah Boekweg,
Shuangjia Lu,
Jessika Baral,
Lijun Yao,
K. Stratton,
L. Bramer,
Erika M. Zink,
Sneha P. Couvillion,
K. Bloodsworth,
S. Satpathy,
W. Sieh,
S. Boca,
S. Schรผrer,
Feng Chen,
M. Wiznerowicz,
K. Ketchum,
Emily Boja,
C. Kinsinger,
A. Robles,
Tara Hiltke,
M. Thiagarajan,
A. Nesvizhskii,
Bing Zhang,
D. Mani,
M. Ceccarelli,
Xi Chen,
S. Cottingham,
Q. K. Li,
A. Kim,
D. Fenyรถ,
Kelly V. Ruggles,
H. Rodriguez,
M. Mesri,
S. Payne,
A. Resnick,
Pei Wang,
Richard D. Smith,
A. Iavarone,
M. Chheda,
J. Barnholtz-Sloan,
K. Rodland,
Tao Liu,
L. Ding
|
8 |
2021 |
8
๐
|
|
๐
|
Proteogenomic Characterization of Endometrial Carcinoma
218 auth.
Yongchao Dou,
Emily A. Kawaler,
D. Zhou,
M. Gritsenko,
Chen Huang,
L. Blumenberg,
A. Karpova,
V. Petyuk,
Sara R. Savage,
S. Satpathy,
Wenke Liu,
Yige Wu,
Chia-Feng Tsai,
Bo Wen,
Zhi Li,
...
Song Cao,
Jamie Moon,
Zhiao Shi,
MacIntosh G. Cornwell,
Matthew A. Wyczalkowski,
R. Chu,
S. Vasaikar,
Hua Zhou,
Qingsong Gao,
Ronald J. Moore,
Kai Li,
Sunantha Sethuraman,
M. Monroe,
R. Zhao,
David I Heiman,
Karsten Krug,
K. Clauser,
Ramani Kothadia,
Y. Maruvka,
Alexander R. Pico,
A. Oliphant,
E. L. Hoskins,
Samuel L. Pugh,
Sean J.I. Beecroft,
David W. Adams,
J. Jarman,
Andy T. Kong,
Hui-Yin Chang,
B. Reva,
Yuxing Liao,
Dmitry Rykunov,
A. Colaprico,
Xi Chen,
Andrzej Czekaลski,
Marcin Jฤdryka,
R. Matkowski,
M. Wiznerowicz,
Tara Hiltke,
Emily Boja,
C. Kinsinger,
M. Mesri,
A. Robles,
H. Rodriguez,
D. Mutch,
K. Fuh,
M. Ellis,
D. DeLair,
M. Thiagarajan,
D. Mani,
G. Getz,
Michael Noble,
A. Nesvizhskii,
Pei Wang,
Matthew L. Anderson,
D. Levine,
Richard D. Smith,
S. Payne,
Kelly V. Ruggles,
K. Rodland,
L. Ding,
Bing Zhang,
Tao Liu,
D. Fenyรถ,
A. Agarwal,
M. Anurag,
D. Avtonomov,
Chet Birger,
M. Birrer,
S. Boca,
William Bocik,
U. Borate,
M. Borucki,
Meghan C. Burke,
S. Cai,
A. Calinawan,
Steve Carr,
Sonya Carter,
Patricia D. Castro,
Sandra R. Cerda,
Michelle Chaikin,
D. Chan,
D. Chan,
Alyssa Charamut,
F. Chen,
Jin Chen,
Lijun Chen,
Lin S. Chen,
David W. Chesla,
M. Chheda,
A. Chinnaiyan,
Shrabanti Chowdhury,
M. Cieslik,
D. Clark,
S. Cottingham,
Houston W. Culpepper,
Jacob O Day,
S. Young,
E. Demir,
S. Dhanasekaran,
R. Dhir,
M. Domagalski,
P. Dottino,
B. Druker,
Elizabeth Duffy,
Maureen A. Dyer,
N. Edwards,
Robert A. Edwards,
Kim Elburn,
J. Field,
Alicia Francis,
S. Gabriel,
Y. Geffen,
Daniel J. Geiszler,
Michael A. Gillette,
A. Godwin,
Pamela Grady,
L. Hannick,
P. Hariharan,
S. Hilsenbeck,
B. Hindenach,
K. Hoadley,
R. Hong,
G. Hostetter,
J. Hsieh,
Yingwei Hu,
M. Ittmann,
Eric J. Jaehnig,
S. Jewell,
Jiayi Ji,
Corbin D. Jones,
Renee Karabon,
K. Ketchum,
Munziba Khan,
Beom-Jun Kim,
A. Krek,
Tanya Krubit,
Chandan Kumar-Sinha,
F. Leprevost,
Michael Lewis,
Q. K. Li,
Yize Li,
Hongwei Liu,
J. Lubiลski,
Weiping Ma,
R. Madan,
Ewa P. Malc,
A. Malovannaya,
S. Mareedu,
S. Markey,
Annette Marrero-Oliveras,
J. Martignetti,
Jason G. McDermott,
P. McGarvey,
John McGee,
P. Mieczkowski,
F. Modugno,
Rebecca S. Montgomery,
Chelsea J. Newton,
G. Omenn,
A. Paulovich,
Amy M. Perou,
F. Petralia,
P. Piehowski,
L. Polonskaya,
L. Qi,
Shannon Richey,
Karna L. Robinson,
Nancy V. Roche,
D. Rohrer,
E. Schadt,
M. Schnaubelt,
Yan Shi,
Tara J. Skelly,
L. Sokoll,
Xiaoyu Song,
S. Stein,
J. Suh,
Donghui Tan,
Darlene Tansil,
Guo Ci Teo,
Ratna R. Thangudu,
C. Tognon,
E. Traer,
J. Tyner,
K. S. Um,
Dana R. Valley,
Negin Vatanian,
Pankaj Vats,
Uma Velvulou,
Michael Vernon,
Liang-Bo Wang,
Ying Wang,
A. Webster,
Thomas F. Westbrook,
D. Wheeler,
Jeffrey R. Whiteaker,
G. Wilson,
Yuriy Zakhartsev,
Robert Zelt,
Hui Zhang,
Yuping Zhang,
Zhen Zhang,
Grace Zhao
|
8 |
2020 |
8
๐
|
|
๐
|
Proteogenomic characterization of pancreatic ductal adenocarcinoma
139 auth.
L. Cao,
Chen Huang,
D. Zhou,
Yingwei Hu,
T. M. Lih,
Sara R. Savage,
Karsten Krug,
D. Clark,
M. Schnaubelt,
Lijun Chen,
F. Leprevost,
R. V. Eguez,
Weiming Yang,
Jianbo Pan,
Bo Wen,
...
Yongchao Dou,
Wen Jiang,
Yuxing Liao,
Zhiao Shi,
Nadezhda V. Terekhanova,
Song Cao,
Rita Jui-Hsien Lu,
Yize Li,
Ruiyang Liu,
Houxiang Zhu,
Peter Ronning,
Yige Wu,
Matthew A. Wyczalkowski,
H. Easwaran,
Ludmila V. Danilova,
A. Mer,
S. Yoo,
Joshua M Wang,
Wenke Liu,
B. Haibe-Kains,
M. Thiagarajan,
S. Jewell,
G. Hostetter,
Chelsea J. Newton,
Q. K. Li,
M. Roehrl,
D. Fenyรถ,
Pei Wang,
A. Nesvizhskii,
D. Mani,
G. Omenn,
Emily Boja,
M. Mesri,
A. Robles,
H. Rodriguez,
O. Bathe,
D. Chan,
R. Hruban,
L. Ding,
Bing Zhang,
Hui Zhang,
Mitual B. Amin,
E. An,
Christine Ayad,
Thomas Bauer,
Chet Birger,
M. Birrer,
S. Boca,
William Bocik,
M. Borucki,
S. Cai,
Steve Carr,
Sandra R. Cerda,
Huan Chen,
Steven F. Chen,
David W. Chesla,
A. Chinnaiyan,
A. Colaprico,
S. Cottingham,
Magdalena Derejska,
S. Dhanasekaran,
M. Domagalski,
B. Druker,
Elizabeth Duffy,
Maureen A. Dyer,
Nathan J. Edwards,
M. Ellis,
J. Eschbacher,
Alicia Francis,
Jesse Francis,
S. Gabriel,
N. Gabrovski,
J. Gardner,
G. Getz,
Michael A. Gillette,
C. A. Goldthwaite,
Pamela Grady,
Shuai Guo,
P. Hariharan,
Tara Hiltke,
B. Hindenach,
K. Hoadley,
Jasmine Huang,
Corbin D. Jones,
K. Ketchum,
C. Kinsinger,
J. Koziak,
K. Kuลnierz,
Tao Liu,
J. Long,
D. Mallery,
S. Mareedu,
R. Matteotti,
Nicollette Maunganidze,
P. McGarvey,
P. Minoo,
O. Paklina,
A. Paulovich,
S. Payne,
O. Potapova,
B. Pruetz,
L. Qi,
Nancy V. Roche,
K. Rodland,
D. Rohrer,
E. Schadt,
A. Shabunin,
T. Shelton,
Y. Shutack,
Shilpi Singh,
Michael V. Smith,
Richard D. Smith,
L. Sokoll,
J. Suh,
Ratna R. Thangudu,
S. Tsang,
K. S. Um,
Dana R. Valley,
Negin Vatanian,
Wenyi Wang,
G. Wilson,
M. Wiznerowicz,
Zhen Zhang,
Grace Zhao
|
8 |
2021 |
8
๐
|
|
๐
|
Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma.
69 auth.
Chen Huang,
Lijun Chen,
Sara R. Savage,
R. V. Eguez,
Yongchao Dou,
Yize Li,
Felipe da Veiga Leprevost,
Eric J. Jaehnig,
Jonathan T. Lei,
Bo Wen,
M. Schnaubelt,
Karsten Krug,
Xiaoyu Song,
M. Cieslik,
Hui-Yin Chang,
...
Matthew A. Wyczalkowski,
Kai Li,
A. Colaprico,
Q. K. Li,
D. Clark,
Yingwei Hu,
Liwei Cao,
Jianbo Pan,
Yuefan Wang,
Kyung-Cho Cho,
Zhiao Shi,
Yuxing Liao,
Wen Jiang,
M. Anurag,
Jiayi Ji,
S. Yoo,
D. Zhou,
Wen-Wei Liang,
M. Wendl,
Pankaj Vats,
S. Carr,
D. Mani,
Zhen Zhang,
Jiang Qian,
Xi Chen,
Alexander R. Pico,
Pei Wang,
A. Chinnaiyan,
K. Ketchum,
C. Kinsinger,
A. Robles,
E. An,
Tara Hiltke,
M. Mesri,
M. Thiagarajan,
Alissa M. Weaver,
A. Sikora,
J. Lubiลski,
M. Wierzbicka,
M. Wiznerowicz,
S. Satpathy,
Michael A. Gillette,
G. Miles,
M. Ellis,
G. Omenn,
H. Rodriguez,
Emily Boja,
S. Dhanasekaran,
L. Ding,
A. Nesvizhskii,
A. El-Naggar,
D. Chan,
Hui Zhang,
Bing Zhang
|
7 |
2021 |
7
๐
|
|
๐
|
A proteogenomic portrait of lung squamous cell carcinoma
162 auth.
S. Satpathy,
Karsten Krug,
P. M. J. Beltran,
Sara R. Savage,
F. Petralia,
Chandan Kumar-Sinha,
Yongchao Dou,
B. Reva,
M. H. Kane,
S. Avanessian,
S. Vasaikar,
A. Krek,
Jonathan T. Lei,
Eric J. Jaehnig,
T. Omelchenko,
...
Y. Geffen,
Erik J. Bergstrom,
Vasileios Stathias,
K. E. Christianson,
David I Heiman,
M. Cieslik,
Song Cao,
Xiaoyu Song,
Jiayi Ji,
Wenke Liu,
Kai Li,
Bo Wen,
Yize Li,
Z. Gรผmรผล,
M. Selvan,
R. Soundararajan,
Tanvi H Visal,
M. G. Raso,
E. Parra,
รzgรผn Babur,
Pankaj Vats,
Shankara K. Anand,
Tobias Schraink,
MacIntosh G. Cornwell,
F. M. Rodrigues,
Houxiang Zhu,
Chia-Kuei Mo,
Yuping Zhang,
F. Leprevost,
Chen Huang,
A. Chinnaiyan,
Matthew A. Wyczalkowski,
G. Omenn,
Chelsea J. Newton,
Stephan Schurer,
Kelly V. Ruggles,
D. Fenyรถ,
S. Jewell,
M. Thiagarajan,
M. Mesri,
H. Rodriguez,
Sendurai A Mani,
N. Udeshi,
G. Getz,
J. Suh,
Q. K. Li,
G. Hostetter,
P. Paik,
S. Dhanasekaran,
R. Govindan,
Li Ding,
A. Robles,
K. Clauser,
A. Nesvizhskii,
Pei Wang,
Steve Carr,
Bing Zhang,
D. Mani,
Michael A. Gillette,
Alex E. Green,
Alfredo Molinolo,
Alicia Francis,
A. Paulovich,
Andrii Karnuta,
A. Colaprico,
B. Hindenach,
B. Pruetz,
B. Kubisa,
B. Druker,
Carissa A. Huynh,
C. A. Goldthwaite,
Chet Birger,
C. Kinsinger,
Corbin D. Jones,
D. Rohrer,
Dana R. Valley,
D. Chan,
David W. Chesla,
D. Hansel,
E. Ponomareva,
Elizabeth Duffy,
E. Burks,
E. Schadt,
E. S. Fedorov,
E. An,
Fei Ding,
G. Wilson,
H. Batra,
Hui Zhang,
Jennifer E. Maas,
J. Eschbacher,
K. Ketchum,
K. Rodland,
K. Hoadley,
Kei Suzuki,
K. S. Um,
L. Qi,
L. Bernard,
M. Wiznerowicz,
M. Wojtyล,
M. Domagalski,
M. Ellis,
Maureen A. Dyer,
M. Borucki,
M. Anurag,
M. Birrer,
Midie Xu,
M. Krotevich,
Nancy V. Roche,
N. Edwards,
Negin Vatanian,
N. R. Mucci,
Nicollette Maunganidze,
N. Gabrovski,
O. Potapova,
O. Fadare,
Pamela Grady,
P. McGarvey,
P. Hariharan,
Ratna R. Thangudu,
Rebecca Montgomery,
R. Pandurengan,
Richard D. Smith,
R. Welsh,
S. Mareedu,
S. Payne,
S. Cottingham,
Shilpi Singh,
S. Tsang,
S. Cai,
S. Gabriel,
Tao Liu,
Tara Hiltke,
T. Vashist,
Thomas Bauer,
V. Sovenko,
Warren G. Tourtellotte,
Weiping Ma,
William Bocik,
Wohaib Hasan,
Xiaojun Jing,
Ximing Tang,
Yuxing Liao,
Yvonne,
Shutack,
Zhen Zhang,
Ziad Hanhan
|
7 |
2021 |
7
๐
|
