|
π¬
|
WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs
Yuxing Liao,
Jing Wang,
Eric J. Jaehnig,
Zhiao Shi,
Bing Zhang
|
11 |
2019 |
11
π¬
|
|
π¬
|
WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013
Jing Wang,
Dexter T. Duncan,
Zhiao Shi,
Bing Zhang
|
10 |
2013 |
10
π¬
|
|
π
|
Proteogenomic characterization of human colon and rectal cancer
76 auth.
Bing Zhang,
Jing Wang,
Xiaojing Wang,
Jing Zhu,
Qi Liu,
Zhiao Shi,
Matthew Chambers,
L. Zimmerman,
Kent Shaddox,
Sangtae Kim,
Sherri R Davies,
Sean Wang,
C. Kinsinger,
Robert C. Rivers,
Henry Rodriguez,
...
R. Townsend,
Matthew J. C. Ellis,
Steve Carr,
David L. Tabb,
R. Coffey,
R. Slebos,
Daniel C. Liebler,
Steve Carr,
Michael A. Gillette,
Karl R. Klauser,
E. Kuhn,
D. Mani,
Philipp Mertins,
K. Ketchum,
A. Paulovich,
Jeffrey R. Whiteaker,
Nathan Edwards,
P. McGarvey,
Subha Madhavan,
Daniel W. Chan,
A. Pandey,
I. Shih,
Hui Zhang,
Zhen Zhang,
Heng Zhu,
Gordon A. Whiteley,
S. Skates,
F. White,
D. Levine,
Emily Boja,
C. Kinsinger,
Tara Hiltke,
M. Mesri,
Robert C. Rivers,
Henry Rodriguez,
K. Shaw,
S. Stein,
D. Fenyo,
T. Liu,
J. Mcdermott,
S. Payne,
K. Rodland,
Richard D. Smith,
P. Rudnick,
Michael Snyder,
Yingming Zhao,
Xian Chen,
D. Ransohoff,
A. Hoofnagle,
Daniel C. Liebler,
M. Sanders,
Zhiao Shi,
R. Slebos,
David L. Tabb,
Bing Zhang,
L. Zimmerman,
Yue Wang,
Sherri R Davies,
Li Ding,
Matthew J. C. Ellis,
R. Reid Townsend
|
10 |
2014 |
10
π
|
|
π
|
Proteogenomic characterization of human colon and rectal cancer
76 auth.
Bing Zhang,
Jing Wang,
Xiaojing Wang,
Jing Zhu,
Qi Liu,
Zhiao Shi,
Matthew Chambers,
L. Zimmerman,
Kent Shaddox,
Sangtae Kim,
Sherri R Davies,
Sean Wang,
C. Kinsinger,
Robert C. Rivers,
Henry Rodriguez,
...
R. Townsend,
Matthew J. C. Ellis,
Steve Carr,
David L. Tabb,
R. Coffey,
R. Slebos,
Daniel C. Liebler,
Steve Carr,
Michael A. Gillette,
Karl R. Klauser,
E. Kuhn,
D. Mani,
Philipp Mertins,
K. Ketchum,
A. Paulovich,
Jeffrey R. Whiteaker,
Nathan Edwards,
P. McGarvey,
Subha Madhavan,
Daniel W. Chan,
A. Pandey,
I. Shih,
Hui Zhang,
Zhen Zhang,
Heng Zhu,
Gordon A. Whiteley,
S. Skates,
F. White,
D. Levine,
Emily Boja,
C. Kinsinger,
Tara Hiltke,
M. Mesri,
Robert C. Rivers,
Henry Rodriguez,
K. Shaw,
S. Stein,
D. Fenyo,
T. Liu,
J. Mcdermott,
S. Payne,
K. Rodland,
Richard D. Smith,
P. Rudnick,
Michael Snyder,
Yingming Zhao,
Xian Chen,
D. Ransohoff,
A. Hoofnagle,
Daniel C. Liebler,
M. Sanders,
Zhiao Shi,
R. Slebos,
David L. Tabb,
Bing Zhang,
L. Zimmerman,
Yue Wang,
Sherri R Davies,
Li Ding,
Matthew J. C. Ellis,
R. Reid Townsend
|
10 |
2014 |
10
π
|
|
π¬
|
WebGestalt 2017: a more comprehensive, powerful, flexible and interactive gene set enrichment analysis toolkit
Jing Wang,
S. Vasaikar,
Zhiao Shi,
Michael Greer,
Bing Zhang
|
9 |
2017 |
9
π¬
|
|
π
|
Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities
82 auth.
S. Vasaikar,
Chen Huang,
Xiaojing Wang,
V. Petyuk,
Sara R. Savage,
Bo Wen,
Yongchao Dou,
Yun Zhang,
Zhiao Shi,
O. A. Arshad,
M. Gritsenko,
L. Zimmerman,
Jason E. McDermott,
T. Clauss,
Ronald J. Moore,
...
R. Zhao,
M. Monroe,
Yi-Ting Wang,
Matthew C Chambers,
R. Slebos,
Ken S. Lau,
Qianxing Mo,
L. Ding,
M. Ellis,
M. Thiagarajan,
C. Kinsinger,
H. Rodriguez,
Richard D. Smith,
K. Rodland,
Daniel C. Liebler,
Tao Liu,
Bing Zhang,
Akhilesh Pandey,
A. Paulovich,
Andrew N. Hoofnagle,
D. Mani,
Daniel W. Chan,
D. Ransohoff,
D. Fenyo,
David L. Tabb,
Douglas A. Levine,
Emily Boja,
E. Kuhn,
Forest M. White,
Gordon A. Whiteley,
Heng Zhu,
Hui Zhang,
I. Shih,
Jasmin H. Bavarva,
Jeffrey R. Whiteaker,
K. Ketchum,
K. Clauser,
Kelly V. Ruggles,
Kim Elburn,
L. Hannick,
Mark A. Watson,
Mauricio Oberti,
M. Mesri,
Melinda E. Sanders,
M. Borucki,
Michael A. Gillette,
Michael Snyder,
Nathan Edwards,
Negin Vatanian,
P. Rudnick,
P. McGarvey,
Philipp Mertins,
R. R. Townsend,
Ratna R. Thangudu,
Robert C. Rivers,
S. Payne,
Sherri R Davies,
Shuang Cai,
Stephen E. Stein,
Steve Carr,
Steven J. Skates,
Subha Madhavan,
Tara Hiltke,
Xian Chen,
Ying Zhao,
Yue Wang,
Zhen Zhang
|
9 |
2019 |
9
π
|
|
π
|
Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy
95 auth.
Karsten Krug,
Eric J. Jaehnig,
S. Satpathy,
L. Blumenberg,
A. Karpova,
M. Anurag,
G. Miles,
Philipp Mertins,
Philipp Mertins,
Y. Geffen,
Lauren C. Tang,
Lauren C. Tang,
David I Heiman,
Song Cao,
Y. Maruvka,
...
Jonathan T. Lei,
Chen Huang,
Ramani Kothadia,
A. Colaprico,
Chet Birger,
Jarey H. Wang,
Yongchao Dou,
Bo Wen,
Zhiao Shi,
Yuxing Liao,
M. Wiznerowicz,
M. Wiznerowicz,
Matthew A. Wyczalkowski,
X. Chen,
Jacob J. Kennedy,
A. Paulovich,
M. Thiagarajan,
C. Kinsinger,
Tara Hiltke,
Emily Boja,
M. Mesri,
A. Robles,
H. Rodriguez,
Thomas F. Westbrook,
L. Ding,
G. Getz,
G. Getz,
K. Clauser,
D. FenyΓΆ,
Kelly V. Ruggles,
Bing Zhang,
D. Mani,
Steve Carr,
M. Ellis,
Michael A. Gillette,
Michael A. Gillette,
S. Avanessian,
S. Cai,
Daniel W. Chan,
Xian Chen,
N. Edwards,
A. Hoofnagle,
M. H. Kane,
K. Ketchum,
E. Kuhn,
D. Levine,
Shunqiang Li,
D. Liebler,
Tao Liu,
Jingqin R Luo,
Subha Madhavan,
Christopher G. Maher,
J. Mcdermott,
P. McGarvey,
Mauricio Oberti,
A. Pandey,
S. Payne,
D. Ransohoff,
Robert C. Rivers,
K. Rodland,
P. Rudnick,
M. Sanders,
K. Shaw,
I. Shih,
R. Slebos,
Richard D. Smith,
Michael Snyder,
S. Stein,
D. Tabb,
Ratna R. Thangudu,
Stefani N. Thomas,
Yue Wang,
F. White,
Jeffrey R. Whiteaker,
Gordon A. Whiteley,
Hui Zhang,
Zhen Zhang,
Yingming Zhao,
Hengying Zhu,
L. Zimmerman
|
8 |
2020 |
8
π
|
|
π
|
Proteogenomic Characterization of Endometrial Carcinoma
218 auth.
Yongchao Dou,
Emily A. Kawaler,
D. Zhou,
M. Gritsenko,
Chen Huang,
L. Blumenberg,
A. Karpova,
V. Petyuk,
Sara R. Savage,
S. Satpathy,
Wenke Liu,
Yige Wu,
Chia-Feng Tsai,
Bo Wen,
Zhi Li,
...
Song Cao,
Jamie Moon,
Zhiao Shi,
MacIntosh G. Cornwell,
Matthew A. Wyczalkowski,
R. Chu,
S. Vasaikar,
Hua Zhou,
Qingsong Gao,
Ronald J. Moore,
Kai Li,
Sunantha Sethuraman,
M. Monroe,
R. Zhao,
David I Heiman,
Karsten Krug,
K. Clauser,
Ramani Kothadia,
Y. Maruvka,
Alexander R. Pico,
A. Oliphant,
E. L. Hoskins,
Samuel L. Pugh,
Sean J.I. Beecroft,
David W. Adams,
J. Jarman,
Andy T. Kong,
Hui-Yin Chang,
B. Reva,
Yuxing Liao,
Dmitry Rykunov,
A. Colaprico,
Xi Chen,
Andrzej CzekaΕski,
Marcin JΔdryka,
R. Matkowski,
M. Wiznerowicz,
Tara Hiltke,
Emily Boja,
C. Kinsinger,
M. Mesri,
A. Robles,
H. Rodriguez,
D. Mutch,
K. Fuh,
M. Ellis,
D. DeLair,
M. Thiagarajan,
D. Mani,
G. Getz,
Michael Noble,
A. Nesvizhskii,
Pei Wang,
Matthew L. Anderson,
D. Levine,
Richard D. Smith,
S. Payne,
Kelly V. Ruggles,
K. Rodland,
L. Ding,
Bing Zhang,
Tao Liu,
D. FenyΓΆ,
A. Agarwal,
M. Anurag,
D. Avtonomov,
Chet Birger,
M. Birrer,
S. Boca,
William Bocik,
U. Borate,
M. Borucki,
Meghan C. Burke,
S. Cai,
A. Calinawan,
Steve Carr,
Sonya Carter,
Patricia D. Castro,
Sandra R. Cerda,
Michelle Chaikin,
D. Chan,
D. Chan,
Alyssa Charamut,
F. Chen,
Jin Chen,
Lijun Chen,
Lin S. Chen,
David W. Chesla,
M. Chheda,
A. Chinnaiyan,
Shrabanti Chowdhury,
M. Cieslik,
D. Clark,
S. Cottingham,
Houston W. Culpepper,
Jacob O Day,
S. Young,
E. Demir,
S. Dhanasekaran,
R. Dhir,
M. Domagalski,
P. Dottino,
B. Druker,
Elizabeth Duffy,
Maureen A. Dyer,
N. Edwards,
Robert A. Edwards,
Kim Elburn,
J. Field,
Alicia Francis,
S. Gabriel,
Y. Geffen,
Daniel J. Geiszler,
Michael A. Gillette,
A. Godwin,
Pamela Grady,
L. Hannick,
P. Hariharan,
S. Hilsenbeck,
B. Hindenach,
K. Hoadley,
R. Hong,
G. Hostetter,
J. Hsieh,
Yingwei Hu,
M. Ittmann,
Eric J. Jaehnig,
S. Jewell,
Jiayi Ji,
Corbin D. Jones,
Renee Karabon,
K. Ketchum,
Munziba Khan,
Beom-Jun Kim,
A. Krek,
Tanya Krubit,
Chandan Kumar-Sinha,
F. Leprevost,
Michael Lewis,
Q. K. Li,
Yize Li,
Hongwei Liu,
J. LubiΕski,
Weiping Ma,
R. Madan,
Ewa P. Malc,
A. Malovannaya,
S. Mareedu,
S. Markey,
Annette Marrero-Oliveras,
J. Martignetti,
Jason G. McDermott,
P. McGarvey,
John McGee,
P. Mieczkowski,
F. Modugno,
Rebecca S. Montgomery,
Chelsea J. Newton,
G. Omenn,
A. Paulovich,
Amy M. Perou,
F. Petralia,
P. Piehowski,
L. Polonskaya,
L. Qi,
Shannon Richey,
Karna L. Robinson,
Nancy V. Roche,
D. Rohrer,
E. Schadt,
M. Schnaubelt,
Yan Shi,
Tara J. Skelly,
L. Sokoll,
Xiaoyu Song,
S. Stein,
J. Suh,
Donghui Tan,
Darlene Tansil,
Guo Ci Teo,
Ratna R. Thangudu,
C. Tognon,
E. Traer,
J. Tyner,
K. S. Um,
Dana R. Valley,
Negin Vatanian,
Pankaj Vats,
Uma Velvulou,
Michael Vernon,
Liang-Bo Wang,
Ying Wang,
A. Webster,
Thomas F. Westbrook,
D. Wheeler,
Jeffrey R. Whiteaker,
G. Wilson,
Yuriy Zakhartsev,
Robert Zelt,
Hui Zhang,
Yuping Zhang,
Zhen Zhang,
Grace Zhao
|
8 |
2020 |
8
π
|
|
π
|
Proteogenomic characterization of pancreatic ductal adenocarcinoma
139 auth.
L. Cao,
Chen Huang,
D. Zhou,
Yingwei Hu,
T. M. Lih,
Sara R. Savage,
Karsten Krug,
D. Clark,
M. Schnaubelt,
Lijun Chen,
F. Leprevost,
R. V. Eguez,
Weiming Yang,
Jianbo Pan,
Bo Wen,
...
Yongchao Dou,
Wen Jiang,
Yuxing Liao,
Zhiao Shi,
Nadezhda V. Terekhanova,
Song Cao,
Rita Jui-Hsien Lu,
Yize Li,
Ruiyang Liu,
Houxiang Zhu,
Peter Ronning,
Yige Wu,
Matthew A. Wyczalkowski,
H. Easwaran,
Ludmila V. Danilova,
A. Mer,
S. Yoo,
Joshua M Wang,
Wenke Liu,
B. Haibe-Kains,
M. Thiagarajan,
S. Jewell,
G. Hostetter,
Chelsea J. Newton,
Q. K. Li,
M. Roehrl,
D. FenyΓΆ,
Pei Wang,
A. Nesvizhskii,
D. Mani,
G. Omenn,
Emily Boja,
M. Mesri,
A. Robles,
H. Rodriguez,
O. Bathe,
D. Chan,
R. Hruban,
L. Ding,
Bing Zhang,
Hui Zhang,
Mitual B. Amin,
E. An,
Christine Ayad,
Thomas Bauer,
Chet Birger,
M. Birrer,
S. Boca,
William Bocik,
M. Borucki,
S. Cai,
Steve Carr,
Sandra R. Cerda,
Huan Chen,
Steven F. Chen,
David W. Chesla,
A. Chinnaiyan,
A. Colaprico,
S. Cottingham,
Magdalena Derejska,
S. Dhanasekaran,
M. Domagalski,
B. Druker,
Elizabeth Duffy,
Maureen A. Dyer,
Nathan J. Edwards,
M. Ellis,
J. Eschbacher,
Alicia Francis,
Jesse Francis,
S. Gabriel,
N. Gabrovski,
J. Gardner,
G. Getz,
Michael A. Gillette,
C. A. Goldthwaite,
Pamela Grady,
Shuai Guo,
P. Hariharan,
Tara Hiltke,
B. Hindenach,
K. Hoadley,
Jasmine Huang,
Corbin D. Jones,
K. Ketchum,
C. Kinsinger,
J. Koziak,
K. KuΕnierz,
Tao Liu,
J. Long,
D. Mallery,
S. Mareedu,
R. Matteotti,
Nicollette Maunganidze,
P. McGarvey,
P. Minoo,
O. Paklina,
A. Paulovich,
S. Payne,
O. Potapova,
B. Pruetz,
L. Qi,
Nancy V. Roche,
K. Rodland,
D. Rohrer,
E. Schadt,
A. Shabunin,
T. Shelton,
Y. Shutack,
Shilpi Singh,
Michael V. Smith,
Richard D. Smith,
L. Sokoll,
J. Suh,
Ratna R. Thangudu,
S. Tsang,
K. S. Um,
Dana R. Valley,
Negin Vatanian,
Wenyi Wang,
G. Wilson,
M. Wiznerowicz,
Zhen Zhang,
Grace Zhao
|
8 |
2021 |
8
π
|
|
π
|
Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma.
69 auth.
Chen Huang,
Lijun Chen,
Sara R. Savage,
R. V. Eguez,
Yongchao Dou,
Yize Li,
Felipe da Veiga Leprevost,
Eric J. Jaehnig,
Jonathan T. Lei,
Bo Wen,
M. Schnaubelt,
Karsten Krug,
Xiaoyu Song,
M. Cieslik,
Hui-Yin Chang,
...
Matthew A. Wyczalkowski,
Kai Li,
A. Colaprico,
Q. K. Li,
D. Clark,
Yingwei Hu,
Liwei Cao,
Jianbo Pan,
Yuefan Wang,
Kyung-Cho Cho,
Zhiao Shi,
Yuxing Liao,
Wen Jiang,
M. Anurag,
Jiayi Ji,
S. Yoo,
D. Zhou,
Wen-Wei Liang,
M. Wendl,
Pankaj Vats,
S. Carr,
D. Mani,
Zhen Zhang,
Jiang Qian,
Xi Chen,
Alexander R. Pico,
Pei Wang,
A. Chinnaiyan,
K. Ketchum,
C. Kinsinger,
A. Robles,
E. An,
Tara Hiltke,
M. Mesri,
M. Thiagarajan,
Alissa M. Weaver,
A. Sikora,
J. LubiΕski,
M. Wierzbicka,
M. Wiznerowicz,
S. Satpathy,
Michael A. Gillette,
G. Miles,
M. Ellis,
G. Omenn,
H. Rodriguez,
Emily Boja,
S. Dhanasekaran,
L. Ding,
A. Nesvizhskii,
A. El-Naggar,
D. Chan,
Hui Zhang,
Bing Zhang
|
7 |
2021 |
7
π
|
|
π¦
|
Co-expression module analysis reveals biological processes, genomic gain, and regulatory mechanisms associated with breast cancer progression
Zhiao Shi,
C. Derow,
Bing Zhang
|
6 |
2010 |
6
π¦
|
|
π¬
|
GLAD4U: deriving and prioritizing gene lists from PubMed literature
J. Jourquin,
Dexter T. Duncan,
Zhiao Shi,
Bing Zhang
|
6 |
2012 |
6
π¬
|
