|
🐜
|
Proteogenomic characterization of pancreatic ductal adenocarcinoma
139 auth.
L. Cao,
Chen Huang,
D. Zhou,
Yingwei Hu,
T. M. Lih,
Sara R. Savage,
Karsten Krug,
D. Clark,
M. Schnaubelt,
Lijun Chen,
F. Leprevost,
R. V. Eguez,
Weiming Yang,
Jianbo Pan,
Bo Wen,
...
Yongchao Dou,
Wen Jiang,
Yuxing Liao,
Zhiao Shi,
Nadezhda V. Terekhanova,
Song Cao,
Rita Jui-Hsien Lu,
Yize Li,
Ruiyang Liu,
Houxiang Zhu,
Peter Ronning,
Yige Wu,
Matthew A. Wyczalkowski,
H. Easwaran,
Ludmila V. Danilova,
A. Mer,
S. Yoo,
Joshua M Wang,
Wenke Liu,
B. Haibe-Kains,
M. Thiagarajan,
S. Jewell,
G. Hostetter,
Chelsea J. Newton,
Q. K. Li,
M. Roehrl,
D. Fenyö,
Pei Wang,
A. Nesvizhskii,
D. Mani,
G. Omenn,
Emily Boja,
M. Mesri,
A. Robles,
H. Rodriguez,
O. Bathe,
D. Chan,
R. Hruban,
L. Ding,
Bing Zhang,
Hui Zhang,
Mitual B. Amin,
E. An,
Christine Ayad,
Thomas Bauer,
Chet Birger,
M. Birrer,
S. Boca,
William Bocik,
M. Borucki,
S. Cai,
Steve Carr,
Sandra R. Cerda,
Huan Chen,
Steven F. Chen,
David W. Chesla,
A. Chinnaiyan,
A. Colaprico,
S. Cottingham,
Magdalena Derejska,
S. Dhanasekaran,
M. Domagalski,
B. Druker,
Elizabeth Duffy,
Maureen A. Dyer,
Nathan J. Edwards,
M. Ellis,
J. Eschbacher,
Alicia Francis,
Jesse Francis,
S. Gabriel,
N. Gabrovski,
J. Gardner,
G. Getz,
Michael A. Gillette,
C. A. Goldthwaite,
Pamela Grady,
Shuai Guo,
P. Hariharan,
Tara Hiltke,
B. Hindenach,
K. Hoadley,
Jasmine Huang,
Corbin D. Jones,
K. Ketchum,
C. Kinsinger,
J. Koziak,
K. Kuśnierz,
Tao Liu,
J. Long,
D. Mallery,
S. Mareedu,
R. Matteotti,
Nicollette Maunganidze,
P. McGarvey,
P. Minoo,
O. Paklina,
A. Paulovich,
S. Payne,
O. Potapova,
B. Pruetz,
L. Qi,
Nancy V. Roche,
K. Rodland,
D. Rohrer,
E. Schadt,
A. Shabunin,
T. Shelton,
Y. Shutack,
Shilpi Singh,
Michael V. Smith,
Richard D. Smith,
L. Sokoll,
J. Suh,
Ratna R. Thangudu,
S. Tsang,
K. S. Um,
Dana R. Valley,
Negin Vatanian,
Wenyi Wang,
G. Wilson,
M. Wiznerowicz,
Zhen Zhang,
Grace Zhao
|
8 |
2021 |
8
🐜
|
|
🐜
|
Genetic and phenotypic intra-species variation in Candida albicans
13 auth.
M. Hirakawa,
Diego A. Martinez,
Sharadha Sakthikumar,
Matthew Z. Anderson,
A. Berlin,
Sharvari Gujja,
Qiandong Zeng,
Ethan Zisson,
Joshua M Wang,
J. Greenberg,
...
J. Berman,
R. Bennett,
Christina A. Cuomo
|
8 |
2015 |
8
🐜
|
|
🐜
|
Integrated Proteogenomic Characterization across Major Histological Types of Pediatric Brain Cancer
143 auth.
F. Petralia,
N. Tignor,
B. Reva,
Mateusz P. Koptyra,
Shrabanti Chowdhury,
Dmitry Rykunov,
A. Krek,
Weiping Ma,
Yuankun Zhu,
Jiayi Ji,
A. Calinawan,
Jeffrey R. Whiteaker,
A. Colaprico,
Vasileios Stathias,
T. Omelchenko,
...
Xiaoyu Song,
Pichai Raman,
Yiran Guo,
Miguel A. Brown,
R. Ivey,
John Szpyt,
S. Thakurta,
M. Gritsenko,
K. Weitz,
Gonzalo López,
Selim Kalayci,
Z. Gümüş,
S. Yoo,
F. Leprevost,
Hui-Yin Chang,
Karsten Krug,
L. Katsnelson,
Ying Wang,
Jacob J. Kennedy,
Uliana J. Voytovich,
Lei Zhao,
Krutika S. Gaonkar,
Brian M. Ennis,
V. Baubet,
Lamiya Tauhid,
Jena V. Lilly,
Jennifer L. Mason,
Bailey K. Farrow,
Nathan M. Young,
S. Leary,
Jamie Moon,
V. Petyuk,
J. Nazarian,
N. Adappa,
J. Palmer,
R. Lober,
S. Rivero-Hinojosa,
Liang-Bo Wang,
Joshua M Wang,
M.A. Broberg,
R. Chu,
Ronald J. Moore,
M. Monroe,
R. Zhao,
Richard D. Smith,
Jun Zhu,
A. Robles,
M. Mesri,
Emily Boja,
Tara Hiltke,
H. Rodriguez,
Bing Zhang,
E. Schadt,
D. Mani,
L. Ding,
A. Iavarone,
M. Wiznerowicz,
S. Schürer,
Xi Chen,
Allison P. Heath,
J. L. Rokita,
A. Nesvizhskii,
D. Fenyö,
K. Rodland,
Tao Liu,
S. Gygi,
A. Paulovich,
A. Resnick,
P. Storm,
Brian R. Rood,
Pei Wang,
Alicia Francis,
Allison M. Morgan,
A. Waanders,
A. Viaene,
A. Buccoliero,
A. Chinnaiyan,
Carin Leonard,
C. Kline,
C. Caporalini,
C. Kinsinger,
Chunde Li,
D. Kram,
D. Hanson,
Elizabeth Appert,
Emily A. Kawaler,
Eric H. Raabe,
E. Jackson,
J. Greenfield,
Gabrielle Stone,
G. Getz,
G. Grant,
Guo Ci Teo,
I. Pollack,
J. Cain,
J. Foster,
J. Phillips,
July E. Palma,
K. Ketchum,
Kelly V. Ruggles,
L. Blumenberg,
MacIntosh G. Cornwell,
Mahdi Sarmady,
M. Domagalski,
M. Cieslik,
M. Santi,
Marilyn M. Li,
M. Ellis,
Matthew A. Wyczalkowski,
Meghan Connors,
M. Scagnet,
N. Gupta,
N. Edwards,
N. Vitanza,
O. Vaske,
O. Becher,
P. McGarvey,
R. Firestein,
S. Mueller,
Samuel G. Winebrake,
S. Dhanasekaran,
S. Cai,
S. Partap,
Tatiana S. Patton,
T. Le,
T. D. Lorentzen,
Wenke Liu,
William Bocik
|
7 |
2020 |
7
🐜
|
|
🐜
|
Histopathologic and proteogenomic heterogeneity reveals features of clear cell renal cell carcinoma aggressiveness.
161 auth.
Yize Li,
T. Lih,
S. Dhanasekaran,
R. Mannan,
Lijun Chen,
M. Cieslik,
Yige Wu,
Rita Jui-Hsien Lu,
D. Clark,
Iga Kołodziejczak,
R. Hong,
Siqi Chen,
Yanyan Zhao,
Seema Chugh,
Wagma Caravan,
...
Nataly Naser Al Deen,
Noshad Hosseini,
Chelsea J. Newton,
Karsten Krug,
Yuanwei Xu,
Kyung-Cho Cho,
Yingwei Hu,
Yuping Zhang,
Chandan Kumar-Sinha,
Weiping Ma,
A. Calinawan,
Matthew A. Wyczalkowski,
M. Wendl,
Yuefan Wang,
Shenghao Guo,
Cissy Zhang,
A. Le,
Aniket Dagar,
A. Hopkins,
Hanbyul Cho,
F. Leprevost,
Xiaojun Jing,
Guo Ci Teo,
Wenke Liu,
M. Reimers,
R. Pachynski,
A. Lazar,
A. Chinnaiyan,
B. V. Van Tine,
Bing‐yu Zhang,
K. Rodland,
G. Getz,
D. Mani,
Pei Wang,
F. Chen,
G. Hostetter,
M. Thiagarajan,
W. Linehan,
D. Fenyö,
S. Jewell,
G. Omenn,
R. Mehra,
M. Wiznerowicz,
A. Robles,
M. Mesri,
Tara Hiltke,
E. An,
Henry Rodriguez,
Daniel W. Chan,
C. Ricketts,
A. Nesvizhskii,
Hui Zhang,
Li Ding,
Alicia Francis,
A. Paulovich,
A. Antczak,
Anthony Green,
A. Colaprico,
A. Hakimi,
B. Pruetz,
B. Hindenach,
B. Yadav,
B. Reva,
Brenda Fevrier-Sullivan,
B. Druker,
C. Szczylik,
C. A. Goldthwaite,
Chet Birger,
Corbin D. Jones,
D. Rohrer,
Darlene Tansil,
David W. Chesla,
David I Heiman,
Elizabeth Duffy,
Erin Schadt,
F. Petralia,
G. Bromiński,
G. Quiroga-Garza,
G. Wilson,
Ginny X. Li,
Grace Zhao,
Y. Hsiao,
J. Hsieh,
J. Lubiński,
Jasmin H. Bavarva,
Jasmine Huang,
J. Hafron,
J. Eschbacher,
Jennifer Hon,
Jesse Francis,
J. Freymann,
Josh N. Vo,
Joshua M Wang,
J. Kirby,
Kakhaber Zaalishvili,
K. Ketchum,
K. Hoadley,
K. S. Um,
L. Qi,
M. Domagalski,
Matt Tobin,
Maureen A. Dyer,
M. Anurag,
M. Borucki,
Michael A. Gillette,
M. Birrer,
M. Ittmann,
M. Roehrl,
M. Schnaubelt,
Michael V. Smith,
M. Fam,
Nancy V. Roche,
Negin Vatanian,
Nicollette Maunganidze,
O. Potapova,
O. Paklina,
Pamela VanderKolk,
Patricia D. Castro,
Paweł Kurzawa,
P. Hariharan,
Qin Li,
Q. K. Li,
R. Dhir,
Ratna R. Thangudu,
Rebecca Montgomery,
Richard D. Smith,
S. Mareedu,
S. Payne,
Sandra R. Cerda,
S. Cottingham,
Sarah Haynes,
S. Satpathy,
Shannon Richey,
Shilpi Singh,
S. Tsang,
Shuang Cai,
Song Cao,
S. Gabriel,
Steve Carr,
T. Liu,
Thomas Bauer,
Toan Le,
X. S. Chen,
Xu Zhang,
Y. Shutack,
Zhen Zhang
|
6 |
2022 |
6
🐜
|
|
🐜
|
Hemizygosity Enables a Mutational Transition Governing Fungal Virulence and Commensalism.
9 auth.
Shen-Huan Liang,
Matthew Z. Anderson,
M. Hirakawa,
Joshua M Wang,
C. Frazer,
Leenah Alaalm,
...
Gregory J. Thomson,
Iuliana V. Ene,
R. Bennett
|
6 |
2019 |
6
🐜
|
|
🐜
|
Proteogenomic data and resources for pan-cancer analysis.
130 auth.
Yize Li,
Yongchao Dou,
Felipe da Veiga Leprevost,
Y. Geffen,
A. Calinawan,
F. Aguet,
Y. Akiyama,
Shankara K. Anand,
Chet Birger,
Song Cao,
Rekha Chaudhary,
Padmini Chilappagari,
M. Cieslik,
A. Colaprico,
D. Zhou,
...
Corbin Day,
M. Domagalski,
Myvizhi Esai Selvan,
D. Fenyö,
S. Foltz,
Alicia Francis,
Tania J. González-Robles,
Z. Gümüş,
David I Heiman,
M. Holck,
R. Hong,
Yingwei Hu,
Eric J. Jaehnig,
Jiayi Ji,
Wen Jiang,
L. Katsnelson,
K. Ketchum,
R. Klein,
Jonathan T. Lei,
Wen-Wei Liang,
Yuxing Liao,
Caleb M Lindgren,
Weiping Ma,
Lei Ma,
M. MacCoss,
Fernanda Martins Rodrigues,
Wilson H. McKerrow,
N. Nguyen,
R. Oldroyd,
Alexander R Pilozzi,
Pietro Pugliese,
B. Reva,
P. Rudnick,
Kelly V. Ruggles,
Dmitry Rykunov,
Sara R. Savage,
M. Schnaubelt,
Tobias Schraink,
Zhiao Shi,
Deepak Singhal,
Xiaoyu Song,
E. Storrs,
Nadezhda V. Terekhanova,
Ratna R. Thangudu,
M. Thiagarajan,
Liang-Bo Wang,
Joshua M Wang,
Ying Wang,
Bo Wen,
Yige Wu,
Matthew A. Wyczalkowski,
Yi Xin,
L. Yao,
Xinpei Yi,
Hui Zhang,
Qing Zhang,
Maya Zuhl,
G. Getz,
Li Ding,
A. Nesvizhskii,
Pei Wang,
Ana I Robles,
Bing Zhang,
S. Payne,
A. Lazar,
A. Paulovich,
A. Iavarone,
A. Chinnaiyan,
B. Druker,
Chandan Kumar-Sinha,
Chelsea J. Newton,
Chen Huang,
D. Mani,
Richard D. Smith,
Emily M Huntsman,
E. Schadt,
E. An,
F. Petralia,
G. Hostetter,
G. Omenn,
Han-Byoul Cho,
Henry Rodriguez,
Iga Kołodziejczak,
Jared L. Johnson,
Jasmin H. Bavarva,
Jimin Tan,
K. Rodland,
K. Clauser,
Karsten Krug,
L. Cantley,
M. Wiznerowicz,
M. Ellis,
M. Anurag,
M. Mesri,
Michael A. Gillette,
M. Birrer,
M. Ceccarelli,
S. Dhanasekaran,
Nathan Edwards,
N. Tignor,
Özgün Babur,
Sara J. C. Gosline,
S. Jewell,
S. Satpathy,
Shrabanti Chowdhury,
S. Schürer,
Steve Carr,
T. Liu,
Tara Hiltke,
Tomer M. Yaron,
Vasileios Stathias,
Wenke Liu,
Xu Zhang,
Yizhe Song,
Zhen Zhang
|
6 |
2023 |
6
🐜
|
|
🐜
|
Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation
124 auth.
Y. Geffen,
Shankara K. Anand,
Y. Akiyama,
Tomer M. Yaron,
Yizhe Song,
Jared L. Johnson,
Akshay Govindan,
Özgün Babur,
Yize Li,
Emily M Huntsman,
Liang-Bo Wang,
Chet Birger,
David I Heiman,
Qing Zhang,
Mendy Miller,
...
Y. Maruvka,
N. Haradhvala,
A. Calinawan,
Saveliy Belkin,
A. Kerelsky,
K. Clauser,
Karsten Krug,
S. Satpathy,
S. Payne,
D. Mani,
Michael A. Gillette,
S. Dhanasekaran,
M. Thiagarajan,
M. Mesri,
H. Rodriguez,
Ana I Robles,
Steve Carr,
A. Lazar,
F. Aguet,
L. Cantley,
Li Ding,
G. Getz,
E. An,
M. Anurag,
Jasmin H. Bavarva,
M. Birrer,
Song Cao,
M. Ceccarelli,
Daniel W. Chan,
A. Chinnaiyan,
Hanbyul Cho,
Shrabanti Chowdhury,
M. Cieslik,
A. Colaprico,
D. Zhou,
F. Leprevost,
Corbin Day,
M. Domagalski,
Yongchao Dou,
B. Druker,
Nathan Edwards,
M. Ellis,
M. Selvan,
D. Fenyo,
S. Foltz,
Alicia Francis,
Tania J. Gonzalez Robles,
Sara J. C. Gosline,
Z. Gümüş,
Tara Hiltke,
R. Hong,
G. Hostetter,
Yingwei Hu,
Chen Huang,
A. Iavarone,
Eric J. Jaehnig,
Scott D. Jewel,
Jiayi Ji,
Wen Jiang,
L. Katsnelson,
K. Ketchum,
Iga Kołodziejczak,
Chandan Kumar-Sinha,
Jonathan T. Lei,
Wen-Wei Liang,
Yuxing Liao,
Caleb M Lindgren,
T. Liu,
Wenke Liu,
Weiping Ma,
F. M. Rodrigues,
Wilson H. McKerrow,
A. Nesvizhskii,
Chelsea J. Newton,
R. Oldroyd,
G. Omenn,
A. Paulovich,
F. Petralia,
Pietro Pugliese,
B. Reva,
K. Rodland,
Kelly V. Ruggles,
Dmitry Rykunov,
Sara R. Savage,
E. Schadt,
M. Schnaubelt,
Tobias Schraink,
Zhiao Shi,
Richard D. Smith,
Xiaoyu Song,
Vasileios Stathias,
E. Storrs,
Jimin Tan,
Nadezhda V. Terekhanova,
Ratna R. Thangudu,
N. Tignor,
Joshua M Wang,
Pei Wang,
Ying Wang,
Bo Wen,
M. Wiznerowicz,
Yige Wu,
Matthew A. Wyczalkowski,
L. Yao,
Xinpei Yi,
Bing Zhang,
Hui Zhang,
Xu Zhang,
Zhen Zhang
|
6 |
2023 |
6
🐜
|
|
🐜
|
Pan-cancer proteogenomics connects oncogenic drivers to functional states
123 auth.
Yize Li,
E. Porta-Pardo,
Collin J Tokheim,
Matthew H. Bailey,
Tomer M. Yaron,
Vasileios Stathias,
Y. Geffen,
Kathleen J. Imbach,
Song Cao,
Shankara K. Anand,
Y. Akiyama,
Wenke Liu,
Matthew A. Wyczalkowski,
Yizhe Song,
E. Storrs,
...
M. Wendl,
Wubing Zhang,
Mustafa Sibai,
Victoria Ruiz-Serra,
Wen-Wei Liang,
Nadezhda V. Terekhanova,
F. M. Rodrigues,
K. Clauser,
David I Heiman,
Qing Zhang,
F. Aguet,
A. Calinawan,
S. Dhanasekaran,
Chet Birger,
S. Satpathy,
D. Zhou,
Liang-Bo Wang,
Jessika Baral,
Jared L. Johnson,
Emily M Huntsman,
Pietro Pugliese,
A. Colaprico,
A. Iavarone,
M. Chheda,
C. Ricketts,
D. Fenyö,
S. Payne,
Henry Rodriguez,
Ana I Robles,
Michael A. Gillette,
Chandan Kumar-Sinha,
A. Lazar,
L. Cantley,
G. Getz,
Li Ding,
E. An,
M. Anurag,
Jasmin H. Bavarva,
M. Birrer,
A. Calinawan,
M. Ceccarelli,
Daniel W. Chan,
A. Chinnaiyan,
Han-Byoul Cho,
Shrabanti Chowdhury,
M. Cieslik,
F. Leprevost,
Corbin Day,
M. Domagalski,
Yongchao Dou,
B. Druker,
Nathan Edwards,
M. Ellis,
M. Selvan,
S. Foltz,
Alicia Francis,
Tania J. Gonzalez Robles,
Sara J. C. Gosline,
Z. Gümüş,
Tara Hiltke,
R. Hong,
G. Hostetter,
Yingwei Hu,
Chen Huang,
Emily M Huntsman,
Eric J. Jaehnig,
Scott D. Jewel,
Jiayi Ji,
Wen Jiang,
L. Katsnelson,
K. Ketchum,
Iga Kołodziejczak,
Jonathan T. Lei,
Yuxing Liao,
Caleb M Lindgren,
T. Liu,
Weiping Ma,
Wilson H. McKerrow,
A. Nesvizhskii,
Chelsea J. Newton,
R. Oldroyd,
G. Omenn,
A. Paulovich,
F. Petralia,
B. Reva,
K. Rodland,
Kelly V. Ruggles,
Dmitry Rykunov,
Sara R. Savage,
E. Schadt,
M. Schnaubelt,
Tobias Schraink,
Zhiao Shi,
Richard D. Smith,
Xiaoyu Song,
Jimin Tan,
Ratna R. Thangudu,
N. Tignor,
Joshua M Wang,
Pei Wang,
Ying Wang,
Bo Wen,
M. Wiznerowicz,
Xinpei Yi,
Bing Zhang,
Hui Zhang,
Xu Zhang,
Zhen Zhang
|
5 |
2023 |
5
🐜
|
|
🦁
|
The Genome of the Human Pathogen Candida albicans Is Shaped by Mutation and Cryptic Sexual Recombination
Joshua M Wang,
R. Bennett,
Matthew Z. Anderson
|
5 |
2018 |
5
🦁
|
|
🐜
|
Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer
47 auth.
Shrabanti Chowdhury,
Jacob J. Kennedy,
R. Ivey,
Oscar D. Murillo,
Noshad Hosseini,
Xiaoyu Song,
F. Petralia,
A. Calinawan,
Sara R. Savage,
A. Berry,
B. Reva,
U. Ozbek,
A. Krek,
Weiping Ma,
Felipe da Veiga Leprevost,
...
Jiayi Ji,
S. Yoo,
ChenWei Lin,
Uliana J. Voytovich,
Yajue Huang,
Sun-Hee Lee,
Lindsay A. Bergan,
T. D. Lorentzen,
M. Mesri,
Henry Rodriguez,
A. Hoofnagle,
Zachary T. Herbert,
A. Nesvizhskii,
Bing Zhang,
Jeffrey R. Whiteaker,
D. Fenyo,
Wilson H. McKerrow,
Joshua M Wang,
S. Schürer,
Vasileios Stathias,
X. S. Chen,
M. Barcellos-Hoff,
T. Starr,
B. Winterhoff,
A. Nelson,
S. Mok,
S. Kaufmann,
C. Drescher,
M. Cieslik,
Pei Wang,
M. Birrer,
A. Paulovich
|
4 |
2023 |
4
🐜
|
