|
π
|
Integrated Proteogenomic Characterization of HBV-Related Hepatocellular Carcinoma
27 auth.
Q. Gao,
Hongwen Zhu,
Liangqing Dong,
Weiwei Shi,
Ran Chen,
Zhijian Song,
Chen Huang,
Junqiang Li,
Xiaowei Dong,
Yanting Zhou,
Qian Liu,
Lijie Ma,
Xiaoying Wang,
Jian Zhou,
Yansheng Liu,
...
Emily Boja,
A. Robles,
Weiping Ma,
Pei Wang,
Yize Li,
L. Ding,
Bo Wen,
Bing Zhang,
H. Rodriguez,
Daming Gao,
Hu Zhou,
Jia Fan
|
9 |
2019 |
9
π
|
|
π
|
Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities
82 auth.
S. Vasaikar,
Chen Huang,
Xiaojing Wang,
V. Petyuk,
Sara R. Savage,
Bo Wen,
Yongchao Dou,
Yun Zhang,
Zhiao Shi,
O. A. Arshad,
M. Gritsenko,
L. Zimmerman,
Jason E. McDermott,
T. Clauss,
Ronald J. Moore,
...
R. Zhao,
M. Monroe,
Yi-Ting Wang,
Matthew C Chambers,
R. Slebos,
Ken S. Lau,
Qianxing Mo,
L. Ding,
M. Ellis,
M. Thiagarajan,
C. Kinsinger,
H. Rodriguez,
Richard D. Smith,
K. Rodland,
Daniel C. Liebler,
Tao Liu,
Bing Zhang,
Akhilesh Pandey,
A. Paulovich,
Andrew N. Hoofnagle,
D. Mani,
Daniel W. Chan,
D. Ransohoff,
D. Fenyo,
David L. Tabb,
Douglas A. Levine,
Emily Boja,
E. Kuhn,
Forest M. White,
Gordon A. Whiteley,
Heng Zhu,
Hui Zhang,
I. Shih,
Jasmin H. Bavarva,
Jeffrey R. Whiteaker,
K. Ketchum,
K. Clauser,
Kelly V. Ruggles,
Kim Elburn,
L. Hannick,
Mark A. Watson,
Mauricio Oberti,
M. Mesri,
Melinda E. Sanders,
M. Borucki,
Michael A. Gillette,
Michael Snyder,
Nathan Edwards,
Negin Vatanian,
P. Rudnick,
P. McGarvey,
Philipp Mertins,
R. R. Townsend,
Ratna R. Thangudu,
Robert C. Rivers,
S. Payne,
Sherri R Davies,
Shuang Cai,
Stephen E. Stein,
Steve Carr,
Steven J. Skates,
Subha Madhavan,
Tara Hiltke,
Xian Chen,
Ying Zhao,
Yue Wang,
Zhen Zhang
|
9 |
2019 |
9
π
|
|
π
|
Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma
80 auth.
D. Clark,
S. Dhanasekaran,
F. Petralia,
Jianbo Pan,
Xiaoyu Song,
Yingwei Hu,
Felipe da Veiga Leprevost,
B. Reva,
T. Lih,
Hui-Yin Chang,
Weiping Ma,
Chen Huang,
C. Ricketts,
Lijun Chen,
A. Krek,
...
Yize Li,
Dmitry Rykunov,
Q. K. Li,
Lin S. Chen,
U. Ozbek,
S. Vasaikar,
Yige Wu,
S. Yoo,
Shrabanti Chowdhury,
Matthew A. Wyczalkowski,
Jiayi Ji,
M. Schnaubelt,
Andy T. Kong,
Sunantha Sethuraman,
D. Avtonomov,
Minghui Ao,
A. Colaprico,
Song Cao,
Kyung-Cho Cho,
Selim Kalayci,
Shiyong Ma,
Wenke Liu,
Kelly V. Ruggles,
A. Calinawan,
Z. GΓΌmΓΌΕ,
Daniel J. Geiszler,
Emily A. Kawaler,
Guo Ci Teo,
Bo Wen,
Yuping Zhang,
Sarah Keegan,
Kai Li,
Feng Chen,
N. Edwards,
P. Pierorazio,
Xi Chen,
C. Pavlovich,
A. Hakimi,
G. BromiΕski,
J. Hsieh,
A. Antczak,
T. Omelchenko,
J. LubiΕski,
M. Wiznerowicz,
W. Linehan,
C. Kinsinger,
M. Thiagarajan,
Emily Boja,
M. Mesri,
Tara Hiltke,
A. Robles,
H. Rodriguez,
Jiang Qian,
D. FenyΓΆ,
Bing Zhang,
L. Ding,
E. Schadt,
A. Chinnaiyan,
Zhen Zhang,
G. Omenn,
M. Cieslik,
D. Chan,
A. Nesvizhskii,
Pei Wang,
Hui Zhang
|
8 |
2019 |
8
π
|
|
π
|
Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy
95 auth.
Karsten Krug,
Eric J. Jaehnig,
S. Satpathy,
L. Blumenberg,
A. Karpova,
M. Anurag,
G. Miles,
Philipp Mertins,
Philipp Mertins,
Y. Geffen,
Lauren C. Tang,
Lauren C. Tang,
David I Heiman,
Song Cao,
Y. Maruvka,
...
Jonathan T. Lei,
Chen Huang,
Ramani Kothadia,
A. Colaprico,
Chet Birger,
Jarey H. Wang,
Yongchao Dou,
Bo Wen,
Zhiao Shi,
Yuxing Liao,
M. Wiznerowicz,
M. Wiznerowicz,
Matthew A. Wyczalkowski,
X. Chen,
Jacob J. Kennedy,
A. Paulovich,
M. Thiagarajan,
C. Kinsinger,
Tara Hiltke,
Emily Boja,
M. Mesri,
A. Robles,
H. Rodriguez,
Thomas F. Westbrook,
L. Ding,
G. Getz,
G. Getz,
K. Clauser,
D. FenyΓΆ,
Kelly V. Ruggles,
Bing Zhang,
D. Mani,
Steve Carr,
M. Ellis,
Michael A. Gillette,
Michael A. Gillette,
S. Avanessian,
S. Cai,
Daniel W. Chan,
Xian Chen,
N. Edwards,
A. Hoofnagle,
M. H. Kane,
K. Ketchum,
E. Kuhn,
D. Levine,
Shunqiang Li,
D. Liebler,
Tao Liu,
Jingqin R Luo,
Subha Madhavan,
Christopher G. Maher,
J. Mcdermott,
P. McGarvey,
Mauricio Oberti,
A. Pandey,
S. Payne,
D. Ransohoff,
Robert C. Rivers,
K. Rodland,
P. Rudnick,
M. Sanders,
K. Shaw,
I. Shih,
R. Slebos,
Richard D. Smith,
Michael Snyder,
S. Stein,
D. Tabb,
Ratna R. Thangudu,
Stefani N. Thomas,
Yue Wang,
F. White,
Jeffrey R. Whiteaker,
Gordon A. Whiteley,
Hui Zhang,
Zhen Zhang,
Yingming Zhao,
Hengying Zhu,
L. Zimmerman
|
8 |
2020 |
8
π
|
|
π
|
Proteogenomic Characterization of Endometrial Carcinoma
218 auth.
Yongchao Dou,
Emily A. Kawaler,
D. Zhou,
M. Gritsenko,
Chen Huang,
L. Blumenberg,
A. Karpova,
V. Petyuk,
Sara R. Savage,
S. Satpathy,
Wenke Liu,
Yige Wu,
Chia-Feng Tsai,
Bo Wen,
Zhi Li,
...
Song Cao,
Jamie Moon,
Zhiao Shi,
MacIntosh G. Cornwell,
Matthew A. Wyczalkowski,
R. Chu,
S. Vasaikar,
Hua Zhou,
Qingsong Gao,
Ronald J. Moore,
Kai Li,
Sunantha Sethuraman,
M. Monroe,
R. Zhao,
David I Heiman,
Karsten Krug,
K. Clauser,
Ramani Kothadia,
Y. Maruvka,
Alexander R. Pico,
A. Oliphant,
E. L. Hoskins,
Samuel L. Pugh,
Sean J.I. Beecroft,
David W. Adams,
J. Jarman,
Andy T. Kong,
Hui-Yin Chang,
B. Reva,
Yuxing Liao,
Dmitry Rykunov,
A. Colaprico,
Xi Chen,
Andrzej CzekaΕski,
Marcin JΔdryka,
R. Matkowski,
M. Wiznerowicz,
Tara Hiltke,
Emily Boja,
C. Kinsinger,
M. Mesri,
A. Robles,
H. Rodriguez,
D. Mutch,
K. Fuh,
M. Ellis,
D. DeLair,
M. Thiagarajan,
D. Mani,
G. Getz,
Michael Noble,
A. Nesvizhskii,
Pei Wang,
Matthew L. Anderson,
D. Levine,
Richard D. Smith,
S. Payne,
Kelly V. Ruggles,
K. Rodland,
L. Ding,
Bing Zhang,
Tao Liu,
D. FenyΓΆ,
A. Agarwal,
M. Anurag,
D. Avtonomov,
Chet Birger,
M. Birrer,
S. Boca,
William Bocik,
U. Borate,
M. Borucki,
Meghan C. Burke,
S. Cai,
A. Calinawan,
Steve Carr,
Sonya Carter,
Patricia D. Castro,
Sandra R. Cerda,
Michelle Chaikin,
D. Chan,
D. Chan,
Alyssa Charamut,
F. Chen,
Jin Chen,
Lijun Chen,
Lin S. Chen,
David W. Chesla,
M. Chheda,
A. Chinnaiyan,
Shrabanti Chowdhury,
M. Cieslik,
D. Clark,
S. Cottingham,
Houston W. Culpepper,
Jacob O Day,
S. Young,
E. Demir,
S. Dhanasekaran,
R. Dhir,
M. Domagalski,
P. Dottino,
B. Druker,
Elizabeth Duffy,
Maureen A. Dyer,
N. Edwards,
Robert A. Edwards,
Kim Elburn,
J. Field,
Alicia Francis,
S. Gabriel,
Y. Geffen,
Daniel J. Geiszler,
Michael A. Gillette,
A. Godwin,
Pamela Grady,
L. Hannick,
P. Hariharan,
S. Hilsenbeck,
B. Hindenach,
K. Hoadley,
R. Hong,
G. Hostetter,
J. Hsieh,
Yingwei Hu,
M. Ittmann,
Eric J. Jaehnig,
S. Jewell,
Jiayi Ji,
Corbin D. Jones,
Renee Karabon,
K. Ketchum,
Munziba Khan,
Beom-Jun Kim,
A. Krek,
Tanya Krubit,
Chandan Kumar-Sinha,
F. Leprevost,
Michael Lewis,
Q. K. Li,
Yize Li,
Hongwei Liu,
J. LubiΕski,
Weiping Ma,
R. Madan,
Ewa P. Malc,
A. Malovannaya,
S. Mareedu,
S. Markey,
Annette Marrero-Oliveras,
J. Martignetti,
Jason G. McDermott,
P. McGarvey,
John McGee,
P. Mieczkowski,
F. Modugno,
Rebecca S. Montgomery,
Chelsea J. Newton,
G. Omenn,
A. Paulovich,
Amy M. Perou,
F. Petralia,
P. Piehowski,
L. Polonskaya,
L. Qi,
Shannon Richey,
Karna L. Robinson,
Nancy V. Roche,
D. Rohrer,
E. Schadt,
M. Schnaubelt,
Yan Shi,
Tara J. Skelly,
L. Sokoll,
Xiaoyu Song,
S. Stein,
J. Suh,
Donghui Tan,
Darlene Tansil,
Guo Ci Teo,
Ratna R. Thangudu,
C. Tognon,
E. Traer,
J. Tyner,
K. S. Um,
Dana R. Valley,
Negin Vatanian,
Pankaj Vats,
Uma Velvulou,
Michael Vernon,
Liang-Bo Wang,
Ying Wang,
A. Webster,
Thomas F. Westbrook,
D. Wheeler,
Jeffrey R. Whiteaker,
G. Wilson,
Yuriy Zakhartsev,
Robert Zelt,
Hui Zhang,
Yuping Zhang,
Zhen Zhang,
Grace Zhao
|
8 |
2020 |
8
π
|
|
π
|
Proteogenomic characterization of pancreatic ductal adenocarcinoma
139 auth.
L. Cao,
Chen Huang,
D. Zhou,
Yingwei Hu,
T. M. Lih,
Sara R. Savage,
Karsten Krug,
D. Clark,
M. Schnaubelt,
Lijun Chen,
F. Leprevost,
R. V. Eguez,
Weiming Yang,
Jianbo Pan,
Bo Wen,
...
Yongchao Dou,
Wen Jiang,
Yuxing Liao,
Zhiao Shi,
Nadezhda V. Terekhanova,
Song Cao,
Rita Jui-Hsien Lu,
Yize Li,
Ruiyang Liu,
Houxiang Zhu,
Peter Ronning,
Yige Wu,
Matthew A. Wyczalkowski,
H. Easwaran,
Ludmila V. Danilova,
A. Mer,
S. Yoo,
Joshua M Wang,
Wenke Liu,
B. Haibe-Kains,
M. Thiagarajan,
S. Jewell,
G. Hostetter,
Chelsea J. Newton,
Q. K. Li,
M. Roehrl,
D. FenyΓΆ,
Pei Wang,
A. Nesvizhskii,
D. Mani,
G. Omenn,
Emily Boja,
M. Mesri,
A. Robles,
H. Rodriguez,
O. Bathe,
D. Chan,
R. Hruban,
L. Ding,
Bing Zhang,
Hui Zhang,
Mitual B. Amin,
E. An,
Christine Ayad,
Thomas Bauer,
Chet Birger,
M. Birrer,
S. Boca,
William Bocik,
M. Borucki,
S. Cai,
Steve Carr,
Sandra R. Cerda,
Huan Chen,
Steven F. Chen,
David W. Chesla,
A. Chinnaiyan,
A. Colaprico,
S. Cottingham,
Magdalena Derejska,
S. Dhanasekaran,
M. Domagalski,
B. Druker,
Elizabeth Duffy,
Maureen A. Dyer,
Nathan J. Edwards,
M. Ellis,
J. Eschbacher,
Alicia Francis,
Jesse Francis,
S. Gabriel,
N. Gabrovski,
J. Gardner,
G. Getz,
Michael A. Gillette,
C. A. Goldthwaite,
Pamela Grady,
Shuai Guo,
P. Hariharan,
Tara Hiltke,
B. Hindenach,
K. Hoadley,
Jasmine Huang,
Corbin D. Jones,
K. Ketchum,
C. Kinsinger,
J. Koziak,
K. KuΕnierz,
Tao Liu,
J. Long,
D. Mallery,
S. Mareedu,
R. Matteotti,
Nicollette Maunganidze,
P. McGarvey,
P. Minoo,
O. Paklina,
A. Paulovich,
S. Payne,
O. Potapova,
B. Pruetz,
L. Qi,
Nancy V. Roche,
K. Rodland,
D. Rohrer,
E. Schadt,
A. Shabunin,
T. Shelton,
Y. Shutack,
Shilpi Singh,
Michael V. Smith,
Richard D. Smith,
L. Sokoll,
J. Suh,
Ratna R. Thangudu,
S. Tsang,
K. S. Um,
Dana R. Valley,
Negin Vatanian,
Wenyi Wang,
G. Wilson,
M. Wiznerowicz,
Zhen Zhang,
Grace Zhao
|
8 |
2021 |
8
π
|
|
π
|
Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma.
69 auth.
Chen Huang,
Lijun Chen,
Sara R. Savage,
R. V. Eguez,
Yongchao Dou,
Yize Li,
Felipe da Veiga Leprevost,
Eric J. Jaehnig,
Jonathan T. Lei,
Bo Wen,
M. Schnaubelt,
Karsten Krug,
Xiaoyu Song,
M. Cieslik,
Hui-Yin Chang,
...
Matthew A. Wyczalkowski,
Kai Li,
A. Colaprico,
Q. K. Li,
D. Clark,
Yingwei Hu,
Liwei Cao,
Jianbo Pan,
Yuefan Wang,
Kyung-Cho Cho,
Zhiao Shi,
Yuxing Liao,
Wen Jiang,
M. Anurag,
Jiayi Ji,
S. Yoo,
D. Zhou,
Wen-Wei Liang,
M. Wendl,
Pankaj Vats,
S. Carr,
D. Mani,
Zhen Zhang,
Jiang Qian,
Xi Chen,
Alexander R. Pico,
Pei Wang,
A. Chinnaiyan,
K. Ketchum,
C. Kinsinger,
A. Robles,
E. An,
Tara Hiltke,
M. Mesri,
M. Thiagarajan,
Alissa M. Weaver,
A. Sikora,
J. LubiΕski,
M. Wierzbicka,
M. Wiznerowicz,
S. Satpathy,
Michael A. Gillette,
G. Miles,
M. Ellis,
G. Omenn,
H. Rodriguez,
Emily Boja,
S. Dhanasekaran,
L. Ding,
A. Nesvizhskii,
A. El-Naggar,
D. Chan,
Hui Zhang,
Bing Zhang
|
7 |
2021 |
7
π
|
|
π
|
A proteogenomic portrait of lung squamous cell carcinoma
162 auth.
S. Satpathy,
Karsten Krug,
P. M. J. Beltran,
Sara R. Savage,
F. Petralia,
Chandan Kumar-Sinha,
Yongchao Dou,
B. Reva,
M. H. Kane,
S. Avanessian,
S. Vasaikar,
A. Krek,
Jonathan T. Lei,
Eric J. Jaehnig,
T. Omelchenko,
...
Y. Geffen,
Erik J. Bergstrom,
Vasileios Stathias,
K. E. Christianson,
David I Heiman,
M. Cieslik,
Song Cao,
Xiaoyu Song,
Jiayi Ji,
Wenke Liu,
Kai Li,
Bo Wen,
Yize Li,
Z. GΓΌmΓΌΕ,
M. Selvan,
R. Soundararajan,
Tanvi H Visal,
M. G. Raso,
E. Parra,
ΓzgΓΌn Babur,
Pankaj Vats,
Shankara K. Anand,
Tobias Schraink,
MacIntosh G. Cornwell,
F. M. Rodrigues,
Houxiang Zhu,
Chia-Kuei Mo,
Yuping Zhang,
F. Leprevost,
Chen Huang,
A. Chinnaiyan,
Matthew A. Wyczalkowski,
G. Omenn,
Chelsea J. Newton,
Stephan Schurer,
Kelly V. Ruggles,
D. FenyΓΆ,
S. Jewell,
M. Thiagarajan,
M. Mesri,
H. Rodriguez,
Sendurai A Mani,
N. Udeshi,
G. Getz,
J. Suh,
Q. K. Li,
G. Hostetter,
P. Paik,
S. Dhanasekaran,
R. Govindan,
Li Ding,
A. Robles,
K. Clauser,
A. Nesvizhskii,
Pei Wang,
Steve Carr,
Bing Zhang,
D. Mani,
Michael A. Gillette,
Alex E. Green,
Alfredo Molinolo,
Alicia Francis,
A. Paulovich,
Andrii Karnuta,
A. Colaprico,
B. Hindenach,
B. Pruetz,
B. Kubisa,
B. Druker,
Carissa A. Huynh,
C. A. Goldthwaite,
Chet Birger,
C. Kinsinger,
Corbin D. Jones,
D. Rohrer,
Dana R. Valley,
D. Chan,
David W. Chesla,
D. Hansel,
E. Ponomareva,
Elizabeth Duffy,
E. Burks,
E. Schadt,
E. S. Fedorov,
E. An,
Fei Ding,
G. Wilson,
H. Batra,
Hui Zhang,
Jennifer E. Maas,
J. Eschbacher,
K. Ketchum,
K. Rodland,
K. Hoadley,
Kei Suzuki,
K. S. Um,
L. Qi,
L. Bernard,
M. Wiznerowicz,
M. WojtyΕ,
M. Domagalski,
M. Ellis,
Maureen A. Dyer,
M. Borucki,
M. Anurag,
M. Birrer,
Midie Xu,
M. Krotevich,
Nancy V. Roche,
N. Edwards,
Negin Vatanian,
N. R. Mucci,
Nicollette Maunganidze,
N. Gabrovski,
O. Potapova,
O. Fadare,
Pamela Grady,
P. McGarvey,
P. Hariharan,
Ratna R. Thangudu,
Rebecca Montgomery,
R. Pandurengan,
Richard D. Smith,
R. Welsh,
S. Mareedu,
S. Payne,
S. Cottingham,
Shilpi Singh,
S. Tsang,
S. Cai,
S. Gabriel,
Tao Liu,
Tara Hiltke,
T. Vashist,
Thomas Bauer,
V. Sovenko,
Warren G. Tourtellotte,
Weiping Ma,
William Bocik,
Wohaib Hasan,
Xiaojun Jing,
Ximing Tang,
Yuxing Liao,
Yvonne,
Shutack,
Zhen Zhang,
Ziad Hanhan
|
7 |
2021 |
7
π
|
|
π
|
Integrated Proteogenomic Characterization of HBV-Related Hepatocellular Carcinoma
27 auth.
Q. Gao,
Hongwen Zhu,
Liangqing Dong,
Weiwei Shi,
Ran Chen,
Zhijian Song,
Chen Huang,
Junqiang Li,
Xiaowei Dong,
Yanting Zhou,
Qian Liu,
Lijie Ma,
Xiaoying Wang,
Jian Zhou,
Yansheng Liu,
...
Emily Boja,
A. Robles,
Weiping Ma,
Pei Wang,
Yize Li,
L. Ding,
Bo Wen,
Bing Zhang,
H. Rodriguez,
Daming Gao,
Hu Zhou,
Jia Fan
|
7 |
2019 |
7
π
|
|
π¦
|
Deep Learning in Proteomics
7 auth.
Bo Wen,
Wen-feng Zeng,
Yuxing Liao,
Zhiao Shi,
Sara R. Savage,
Wen Jiang,
...
Bing Zhang
|
6 |
2020 |
6
π¦
|
|
π¦
|
Cancer neoantigen prioritization through sensitive and reliable proteogenomics analysis
Bo Wen,
Kai Li,
Yun Zhang,
Bing Zhang
|
6 |
2020 |
6
π¦
|
