|
🦁
|
Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma
80 auth.
D. Clark,
S. Dhanasekaran,
F. Petralia,
Jianbo Pan,
Xiaoyu Song,
Yingwei Hu,
Felipe da Veiga Leprevost,
B. Reva,
T. Lih,
Hui-Yin Chang,
Weiping Ma,
Chen Huang,
C. Ricketts,
Lijun Chen,
A. Krek,
...
Yize Li,
Dmitry Rykunov,
Q. K. Li,
Lin S. Chen,
U. Ozbek,
S. Vasaikar,
Yige Wu,
S. Yoo,
Shrabanti Chowdhury,
Matthew A. Wyczalkowski,
Jiayi Ji,
M. Schnaubelt,
Andy T. Kong,
Sunantha Sethuraman,
D. Avtonomov,
Minghui Ao,
A. Colaprico,
Song Cao,
Kyung-Cho Cho,
Selim Kalayci,
Shiyong Ma,
Wenke Liu,
Kelly V. Ruggles,
A. Calinawan,
Z. Gümüş,
Daniel J. Geiszler,
Emily A. Kawaler,
Guo Ci Teo,
Bo Wen,
Yuping Zhang,
Sarah Keegan,
Kai Li,
Feng Chen,
N. Edwards,
P. Pierorazio,
Xi Chen,
C. Pavlovich,
A. Hakimi,
G. Bromiński,
J. Hsieh,
A. Antczak,
T. Omelchenko,
J. Lubiński,
M. Wiznerowicz,
W. Linehan,
C. Kinsinger,
M. Thiagarajan,
Emily Boja,
M. Mesri,
Tara Hiltke,
A. Robles,
H. Rodriguez,
Jiang Qian,
D. Fenyö,
Bing Zhang,
L. Ding,
E. Schadt,
A. Chinnaiyan,
Zhen Zhang,
G. Omenn,
M. Cieslik,
D. Chan,
A. Nesvizhskii,
Pei Wang,
Hui Zhang
|
8 |
2019 |
8
🦁
|
|
🐜
|
Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography–mass spectrometry
31 auth.
Philipp Mertins,
Philipp Mertins,
Lauren C. Tang,
Karsten Krug,
D. Clark,
M. Gritsenko,
Lijun Chen,
K. Clauser,
T. Clauss,
Punit Shah,
Michael A. Gillette,
V. Petyuk,
Stefani N. Thomas,
D. Mani,
Filip Mundt,
...
Ronald J. Moore,
Yingwei Hu,
R. Zhao,
M. Schnaubelt,
Hasmik Keshishian,
M. Monroe,
Zhen Zhang,
N. Udeshi,
Deepak Mani,
S. Davies,
R. Townsend,
D. Chan,
Richard D. Smith,
Hui Zhang,
Tao Liu,
S. Carr
|
8 |
2018 |
8
🐜
|
|
🐜
|
Proteogenomic Characterization of Endometrial Carcinoma
218 auth.
Yongchao Dou,
Emily A. Kawaler,
D. Zhou,
M. Gritsenko,
Chen Huang,
L. Blumenberg,
A. Karpova,
V. Petyuk,
Sara R. Savage,
S. Satpathy,
Wenke Liu,
Yige Wu,
Chia-Feng Tsai,
Bo Wen,
Zhi Li,
...
Song Cao,
Jamie Moon,
Zhiao Shi,
MacIntosh G. Cornwell,
Matthew A. Wyczalkowski,
R. Chu,
S. Vasaikar,
Hua Zhou,
Qingsong Gao,
Ronald J. Moore,
Kai Li,
Sunantha Sethuraman,
M. Monroe,
R. Zhao,
David I Heiman,
Karsten Krug,
K. Clauser,
Ramani Kothadia,
Y. Maruvka,
Alexander R. Pico,
A. Oliphant,
E. L. Hoskins,
Samuel L. Pugh,
Sean J.I. Beecroft,
David W. Adams,
J. Jarman,
Andy T. Kong,
Hui-Yin Chang,
B. Reva,
Yuxing Liao,
Dmitry Rykunov,
A. Colaprico,
Xi Chen,
Andrzej Czekański,
Marcin Jędryka,
R. Matkowski,
M. Wiznerowicz,
Tara Hiltke,
Emily Boja,
C. Kinsinger,
M. Mesri,
A. Robles,
H. Rodriguez,
D. Mutch,
K. Fuh,
M. Ellis,
D. DeLair,
M. Thiagarajan,
D. Mani,
G. Getz,
Michael Noble,
A. Nesvizhskii,
Pei Wang,
Matthew L. Anderson,
D. Levine,
Richard D. Smith,
S. Payne,
Kelly V. Ruggles,
K. Rodland,
L. Ding,
Bing Zhang,
Tao Liu,
D. Fenyö,
A. Agarwal,
M. Anurag,
D. Avtonomov,
Chet Birger,
M. Birrer,
S. Boca,
William Bocik,
U. Borate,
M. Borucki,
Meghan C. Burke,
S. Cai,
A. Calinawan,
Steve Carr,
Sonya Carter,
Patricia D. Castro,
Sandra R. Cerda,
Michelle Chaikin,
D. Chan,
D. Chan,
Alyssa Charamut,
F. Chen,
Jin Chen,
Lijun Chen,
Lin S. Chen,
David W. Chesla,
M. Chheda,
A. Chinnaiyan,
Shrabanti Chowdhury,
M. Cieslik,
D. Clark,
S. Cottingham,
Houston W. Culpepper,
Jacob O Day,
S. Young,
E. Demir,
S. Dhanasekaran,
R. Dhir,
M. Domagalski,
P. Dottino,
B. Druker,
Elizabeth Duffy,
Maureen A. Dyer,
N. Edwards,
Robert A. Edwards,
Kim Elburn,
J. Field,
Alicia Francis,
S. Gabriel,
Y. Geffen,
Daniel J. Geiszler,
Michael A. Gillette,
A. Godwin,
Pamela Grady,
L. Hannick,
P. Hariharan,
S. Hilsenbeck,
B. Hindenach,
K. Hoadley,
R. Hong,
G. Hostetter,
J. Hsieh,
Yingwei Hu,
M. Ittmann,
Eric J. Jaehnig,
S. Jewell,
Jiayi Ji,
Corbin D. Jones,
Renee Karabon,
K. Ketchum,
Munziba Khan,
Beom-Jun Kim,
A. Krek,
Tanya Krubit,
Chandan Kumar-Sinha,
F. Leprevost,
Michael Lewis,
Q. K. Li,
Yize Li,
Hongwei Liu,
J. Lubiński,
Weiping Ma,
R. Madan,
Ewa P. Malc,
A. Malovannaya,
S. Mareedu,
S. Markey,
Annette Marrero-Oliveras,
J. Martignetti,
Jason G. McDermott,
P. McGarvey,
John McGee,
P. Mieczkowski,
F. Modugno,
Rebecca S. Montgomery,
Chelsea J. Newton,
G. Omenn,
A. Paulovich,
Amy M. Perou,
F. Petralia,
P. Piehowski,
L. Polonskaya,
L. Qi,
Shannon Richey,
Karna L. Robinson,
Nancy V. Roche,
D. Rohrer,
E. Schadt,
M. Schnaubelt,
Yan Shi,
Tara J. Skelly,
L. Sokoll,
Xiaoyu Song,
S. Stein,
J. Suh,
Donghui Tan,
Darlene Tansil,
Guo Ci Teo,
Ratna R. Thangudu,
C. Tognon,
E. Traer,
J. Tyner,
K. S. Um,
Dana R. Valley,
Negin Vatanian,
Pankaj Vats,
Uma Velvulou,
Michael Vernon,
Liang-Bo Wang,
Ying Wang,
A. Webster,
Thomas F. Westbrook,
D. Wheeler,
Jeffrey R. Whiteaker,
G. Wilson,
Yuriy Zakhartsev,
Robert Zelt,
Hui Zhang,
Yuping Zhang,
Zhen Zhang,
Grace Zhao
|
8 |
2020 |
8
🐜
|
|
🐜
|
Proteogenomic characterization of pancreatic ductal adenocarcinoma
139 auth.
L. Cao,
Chen Huang,
D. Zhou,
Yingwei Hu,
T. M. Lih,
Sara R. Savage,
Karsten Krug,
D. Clark,
M. Schnaubelt,
Lijun Chen,
F. Leprevost,
R. V. Eguez,
Weiming Yang,
Jianbo Pan,
Bo Wen,
...
Yongchao Dou,
Wen Jiang,
Yuxing Liao,
Zhiao Shi,
Nadezhda V. Terekhanova,
Song Cao,
Rita Jui-Hsien Lu,
Yize Li,
Ruiyang Liu,
Houxiang Zhu,
Peter Ronning,
Yige Wu,
Matthew A. Wyczalkowski,
H. Easwaran,
Ludmila V. Danilova,
A. Mer,
S. Yoo,
Joshua M Wang,
Wenke Liu,
B. Haibe-Kains,
M. Thiagarajan,
S. Jewell,
G. Hostetter,
Chelsea J. Newton,
Q. K. Li,
M. Roehrl,
D. Fenyö,
Pei Wang,
A. Nesvizhskii,
D. Mani,
G. Omenn,
Emily Boja,
M. Mesri,
A. Robles,
H. Rodriguez,
O. Bathe,
D. Chan,
R. Hruban,
L. Ding,
Bing Zhang,
Hui Zhang,
Mitual B. Amin,
E. An,
Christine Ayad,
Thomas Bauer,
Chet Birger,
M. Birrer,
S. Boca,
William Bocik,
M. Borucki,
S. Cai,
Steve Carr,
Sandra R. Cerda,
Huan Chen,
Steven F. Chen,
David W. Chesla,
A. Chinnaiyan,
A. Colaprico,
S. Cottingham,
Magdalena Derejska,
S. Dhanasekaran,
M. Domagalski,
B. Druker,
Elizabeth Duffy,
Maureen A. Dyer,
Nathan J. Edwards,
M. Ellis,
J. Eschbacher,
Alicia Francis,
Jesse Francis,
S. Gabriel,
N. Gabrovski,
J. Gardner,
G. Getz,
Michael A. Gillette,
C. A. Goldthwaite,
Pamela Grady,
Shuai Guo,
P. Hariharan,
Tara Hiltke,
B. Hindenach,
K. Hoadley,
Jasmine Huang,
Corbin D. Jones,
K. Ketchum,
C. Kinsinger,
J. Koziak,
K. Kuśnierz,
Tao Liu,
J. Long,
D. Mallery,
S. Mareedu,
R. Matteotti,
Nicollette Maunganidze,
P. McGarvey,
P. Minoo,
O. Paklina,
A. Paulovich,
S. Payne,
O. Potapova,
B. Pruetz,
L. Qi,
Nancy V. Roche,
K. Rodland,
D. Rohrer,
E. Schadt,
A. Shabunin,
T. Shelton,
Y. Shutack,
Shilpi Singh,
Michael V. Smith,
Richard D. Smith,
L. Sokoll,
J. Suh,
Ratna R. Thangudu,
S. Tsang,
K. S. Um,
Dana R. Valley,
Negin Vatanian,
Wenyi Wang,
G. Wilson,
M. Wiznerowicz,
Zhen Zhang,
Grace Zhao
|
8 |
2021 |
8
🐜
|
|
🐜
|
Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma.
69 auth.
Chen Huang,
Lijun Chen,
Sara R. Savage,
R. V. Eguez,
Yongchao Dou,
Yize Li,
Felipe da Veiga Leprevost,
Eric J. Jaehnig,
Jonathan T. Lei,
Bo Wen,
M. Schnaubelt,
Karsten Krug,
Xiaoyu Song,
M. Cieslik,
Hui-Yin Chang,
...
Matthew A. Wyczalkowski,
Kai Li,
A. Colaprico,
Q. K. Li,
D. Clark,
Yingwei Hu,
Liwei Cao,
Jianbo Pan,
Yuefan Wang,
Kyung-Cho Cho,
Zhiao Shi,
Yuxing Liao,
Wen Jiang,
M. Anurag,
Jiayi Ji,
S. Yoo,
D. Zhou,
Wen-Wei Liang,
M. Wendl,
Pankaj Vats,
S. Carr,
D. Mani,
Zhen Zhang,
Jiang Qian,
Xi Chen,
Alexander R. Pico,
Pei Wang,
A. Chinnaiyan,
K. Ketchum,
C. Kinsinger,
A. Robles,
E. An,
Tara Hiltke,
M. Mesri,
M. Thiagarajan,
Alissa M. Weaver,
A. Sikora,
J. Lubiński,
M. Wierzbicka,
M. Wiznerowicz,
S. Satpathy,
Michael A. Gillette,
G. Miles,
M. Ellis,
G. Omenn,
H. Rodriguez,
Emily Boja,
S. Dhanasekaran,
L. Ding,
A. Nesvizhskii,
A. El-Naggar,
D. Chan,
Hui Zhang,
Bing Zhang
|
7 |
2021 |
7
🐜
|
|
🦁
|
Triple SILAC quantitative proteomic analysis reveals differential abundance of cell signaling proteins between normal and lung cancer-derived exosomes.
D. Clark,
William E. Fondrie,
A. Yang,
L. Mao
|
6 |
2016 |
6
🦁
|
|
🐜
|
Proteomic profiling of cell envelope‐associated proteins from Staphylococcus aureus
12 auth.
C. Gatlin,
R. Pieper,
Shih-Ting Huang,
E. Mongodin,
E. Gebregeorgis,
P. Parmar,
...
D. Clark,
H. Alami,
L. Papazisi,
R. Fleischmann,
S. Gill,
S. Peterson
|
6 |
2006 |
6
🐜
|
|
🐜
|
Histopathologic and proteogenomic heterogeneity reveals features of clear cell renal cell carcinoma aggressiveness.
161 auth.
Yize Li,
T. Lih,
S. Dhanasekaran,
R. Mannan,
Lijun Chen,
M. Cieslik,
Yige Wu,
Rita Jui-Hsien Lu,
D. Clark,
Iga Kołodziejczak,
R. Hong,
Siqi Chen,
Yanyan Zhao,
Seema Chugh,
Wagma Caravan,
...
Nataly Naser Al Deen,
Noshad Hosseini,
Chelsea J. Newton,
Karsten Krug,
Yuanwei Xu,
Kyung-Cho Cho,
Yingwei Hu,
Yuping Zhang,
Chandan Kumar-Sinha,
Weiping Ma,
A. Calinawan,
Matthew A. Wyczalkowski,
M. Wendl,
Yuefan Wang,
Shenghao Guo,
Cissy Zhang,
A. Le,
Aniket Dagar,
A. Hopkins,
Hanbyul Cho,
F. Leprevost,
Xiaojun Jing,
Guo Ci Teo,
Wenke Liu,
M. Reimers,
R. Pachynski,
A. Lazar,
A. Chinnaiyan,
B. V. Van Tine,
Bing‐yu Zhang,
K. Rodland,
G. Getz,
D. Mani,
Pei Wang,
F. Chen,
G. Hostetter,
M. Thiagarajan,
W. Linehan,
D. Fenyö,
S. Jewell,
G. Omenn,
R. Mehra,
M. Wiznerowicz,
A. Robles,
M. Mesri,
Tara Hiltke,
E. An,
Henry Rodriguez,
Daniel W. Chan,
C. Ricketts,
A. Nesvizhskii,
Hui Zhang,
Li Ding,
Alicia Francis,
A. Paulovich,
A. Antczak,
Anthony Green,
A. Colaprico,
A. Hakimi,
B. Pruetz,
B. Hindenach,
B. Yadav,
B. Reva,
Brenda Fevrier-Sullivan,
B. Druker,
C. Szczylik,
C. A. Goldthwaite,
Chet Birger,
Corbin D. Jones,
D. Rohrer,
Darlene Tansil,
David W. Chesla,
David I Heiman,
Elizabeth Duffy,
Erin Schadt,
F. Petralia,
G. Bromiński,
G. Quiroga-Garza,
G. Wilson,
Ginny X. Li,
Grace Zhao,
Y. Hsiao,
J. Hsieh,
J. Lubiński,
Jasmin H. Bavarva,
Jasmine Huang,
J. Hafron,
J. Eschbacher,
Jennifer Hon,
Jesse Francis,
J. Freymann,
Josh N. Vo,
Joshua M Wang,
J. Kirby,
Kakhaber Zaalishvili,
K. Ketchum,
K. Hoadley,
K. S. Um,
L. Qi,
M. Domagalski,
Matt Tobin,
Maureen A. Dyer,
M. Anurag,
M. Borucki,
Michael A. Gillette,
M. Birrer,
M. Ittmann,
M. Roehrl,
M. Schnaubelt,
Michael V. Smith,
M. Fam,
Nancy V. Roche,
Negin Vatanian,
Nicollette Maunganidze,
O. Potapova,
O. Paklina,
Pamela VanderKolk,
Patricia D. Castro,
Paweł Kurzawa,
P. Hariharan,
Qin Li,
Q. K. Li,
R. Dhir,
Ratna R. Thangudu,
Rebecca Montgomery,
Richard D. Smith,
S. Mareedu,
S. Payne,
Sandra R. Cerda,
S. Cottingham,
Sarah Haynes,
S. Satpathy,
Shannon Richey,
Shilpi Singh,
S. Tsang,
Shuang Cai,
Song Cao,
S. Gabriel,
Steve Carr,
T. Liu,
Thomas Bauer,
Toan Le,
X. S. Chen,
Xu Zhang,
Y. Shutack,
Zhen Zhang
|
6 |
2022 |
6
🐜
|
|
🐜
|
Comparative proteomic analysis of Staphylococcus aureus strains with differences in resistance to the cell wall‐targeting antibiotic vancomycin
9 auth.
R. Pieper,
Christine L Gatlin-Bunai,
E. Mongodin,
P. Parmar,
Shih-Ting Huang,
D. Clark,
...
R. Fleischmann,
S. Gill,
S. Peterson
|
6 |
2006 |
6
🐜
|
|
🐜
|
Glycoproteomics-based signatures for tumor subtyping and clinical outcome prediction of high-grade serous ovarian cancer
11 auth.
Jianbo Pan,
Yingwei Hu,
Shisheng Sun,
Lijun Chen,
M. Schnaubelt,
D. Clark,
...
Minghui Ao,
Zhen Zhang,
D. Chan,
Jiang Qian,
Hui Zhang
|
6 |
2020 |
6
🐜
|
|
🐜
|
Temperature and growth phase influence the outer-membrane proteome and the expression of a type VI secretion system in Yersinia pestis.
9 auth.
R. Pieper,
Shih-Ting Huang,
Jeffrey M. Robinson,
D. Clark,
H. Alami,
P. Parmar,
...
R. Perry,
R. Fleischmann,
S. Peterson
|
6 |
2009 |
6
🐜
|
