|
π
|
Integrative analysis of 111 reference human epigenomes
96 auth.
R. Consortium,
A. Kundaje,
W. Meuleman,
J. Ernst,
M. Bilenky,
Angela Yen,
A. Moussavi,
Pouya Kheradpour,
Zhizhuo Zhang,
Jianrong Wang,
M. Ziller,
Viren Amin,
J. Whitaker,
Matthew D. Schultz,
L. D. Ward,
...
Abhishek K. Sarkar,
G. Quon,
R. Sandstrom,
M. Eaton,
Yi-Chieh Wu,
Andreas R. Pfenning,
Xinchen Wang,
M. Claussnitzer,
Yaping Liu,
C. Coarfa,
R. Harris,
N. Shoresh,
C. Epstein,
Elizabeta Gjoneska,
Danny Leung,
Wei Xie,
R. D. Hawkins,
R. Lister,
C. Hong,
P. Gascard,
A. Mungall,
Richard A. Moore,
E. Chuah,
Angela Tam,
T. Canfield,
R. Hansen,
R. Kaul,
P. Sabo,
M. Bansal,
A. Carles,
Jesse R. Dixon,
Kai-How Farh,
S. Feizi,
R. KarliΔ,
Ah-Ram Kim,
Ashwinikumar Kulkarni,
Daofeng Li,
R. Lowdon,
GiNell Elliott,
T. Mercer,
Shane J. Neph,
V. Onuchic,
P. Polak,
N. Rajagopal,
P. Ray,
Richard C. Sallari,
Kyle T. Siebenthall,
Nicholas A. Sinnott-Armstrong,
Michael Stevens,
R. Thurman,
Jie Wu,
Bo Zhang,
Xin Zhou,
A. Beaudet,
L. Boyer,
P. Jager,
P. Farnham,
S. Fisher,
D. Haussler,
Steven J. M. Jones,
Wei Li,
M. Marra,
Michael T. McManus,
S. Sunyaev,
J. Thomson,
T. Tlsty,
L. Tsai,
Wei Wang,
R. Waterland,
Michael Q. Zhang,
L. Chadwick,
B. Bernstein,
J. Costello,
J. Ecker,
M. Hirst,
A. Meissner,
A. Milosavljevic,
B. Ren,
J. Stamatoyannopoulos,
Ting Wang,
Manolis Kellis
|
12 |
2015 |
12
π
|
|
π
|
The Genome Sequence of the SARS-Associated Coronavirus
59 auth.
M. Marra,
Steven J. M. Jones,
C. Astell,
R. Holt,
A. Brooks-Wilson,
Y. Butterfield,
J. Khattra,
J. Asano,
Sarah A. Barber,
Susanna Y. Chan,
Alison Cloutier,
S. Coughlin,
Doug Freeman,
Noreen Girn,
O. Griffith,
...
S. Leach,
Michael Mayo,
H. McDonald,
S. Montgomery,
P. Pandoh,
A. Petrescu,
A. G. Robertson,
J. Schein,
Asim Siddiqui,
D. Smailus,
J. Stott,
George S. Yang,
Francis A. Plummer,
A. Andonov,
H. Artsob,
N. Bastien,
K. Bernard,
T. Booth,
Donnie Bowness,
M. Czub,
M. Drebot,
Lisa Fernando,
R. Flick,
M. Garbutt,
Michael Gray,
A. Grolla,
Steven Jones,
H. Feldmann,
A. Meyers,
A. Kabani,
Yan Li,
Susan Normand,
Ute Stroher,
G. Tipples,
S. Tyler,
Robert Vogrig,
D. Ward,
Brynn Watson,
R. Brunham,
M. Krajden,
M. Petric,
D. Skowronski,
C. Upton,
R. L. Roper
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11 |
2003 |
11
π
|
|
π
|
International network of cancer genome projects
260 auth.
T. Hudson,
W. Anderson,
Axel Artez,
A. Barker,
C. Bell,
R. BernabΓ©,
M. Bhan,
F. Calvo,
I. Eerola,
D. Gerhard,
A. Guttmacher,
M. Guyer,
F. Hemsley,
Jennifer L. Jennings,
D. Kerr,
...
P. Klatt,
Patrik Kolar,
Jun Kusada,
D. Lane,
F. Laplace,
Lu Youyong,
G. Nettekoven,
B. Ozenberger,
Jane L. Peterson,
T. S. Rao,
J. Remacle,
A. J. Schafer,
T. Shibata,
M. Stratton,
J. Vockley,
Koichi Watanabe,
Huanming Yang,
M. Yuen,
B. Knoppers,
M. Bobrow,
A. Cambon-Thomsen,
L. Dressler,
S. Dyke,
Y. Joly,
Kazuto Kato,
Karen L Kennedy,
Pilar NicolΓ s,
M. J. Parker,
E. RialβSebbag,
C. Romeo-Casabona,
K. Shaw,
S. Wallace,
G. Wiesner,
N. Zeps,
P. Lichter,
A. Biankin,
C. Chabannon,
L. Chin,
B. Clement,
E. de Γlava,
F. Degos,
M. Ferguson,
Peter Geary,
D. Hayes,
A. Johns,
A. Kasprzyk,
H. Nakagawa,
R. Penny,
M. Piris,
R. Sarin,
A. Scarpa,
M. J. van de Vijver,
P. Futreal,
H. Aburatani,
M. BayΓ©s,
David D L Botwell,
P. Campbell,
X. Estivill,
S. Grimmond,
I. Gut,
M. Hirst,
C. LΓ³pez-OtΓn,
P. Majumder,
M. Marra,
J. McPherson,
Z. Ning,
X. Puente,
Y. Ruan,
H. Stunnenberg,
H. Swerdlow,
V. Velculescu,
R. Wilson,
H. Xue,
Liu Yang,
P. Spellman,
Gary D Bader,
P. Boutros,
Paul Flicek,
G. Getz,
R. GuigΓ³,
Guangwu Guo,
D. Haussler,
S. Heath,
T. Hubbard,
T. Jiang,
Steven J. M. Jones,
Qibin Li,
N. LΓ³pez-Bigas,
Ruibang Luo,
L. Muthuswamy,
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J. Pearson,
V. Quesada,
Benjamin J. Raphael,
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T. Speed,
Lincoln D. Stein,
Joshua M. Stuart,
J. Teague,
Y. Totoki,
T. Tsunoda,
A. Valencia,
D. Wheeler,
Honglong Wu,
Shancen Zhao,
Guangyu Zhou,
M. Lathrop,
G. Thomas,
Teruhiko Yoshida,
M. Axton,
C. Gunter,
L. Miller,
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Syed Haider,
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C. Yung,
A. Cros,
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J. Guberman,
J. Hsu,
D. Chalmers,
K. Hasel,
T. Kaan,
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T. Masui,
L. Rodriguez,
C. Vergely,
D. Bowtell,
N. Cloonan,
A. Defazio,
J. Eshleman,
D. Etemadmoghadam,
B. Gardiner,
J. Kench,
R. Sutherland,
M. Tempero,
N. Waddell,
P. J. Wilson,
S. Gallinger,
M. Tsao,
P. Shaw,
G. Petersen,
D. Mukhopadhyay,
R. DePinho,
S. Thayer,
K. Shazand,
Timothy A Beck,
M. Sam,
Lee E. Timms,
Vanessa Ballin,
Youyong Lu,
J. Ji,
Xiuqing Zhang,
Feng Chen,
Xueda Hu,
Qi Yang,
G. Tian,
Lianhai Zhang,
Xiaofang Xing,
Xianghong Li,
Zhengβgang Zhu,
Yingyan Yu,
Jun Yu,
J. Tost,
P. Brennan,
I. Holcatova,
D. Zaridze,
A. Brazma,
L. Egevard,
E. Prokhortchouk,
R. Banks,
M. UhlΓ©n,
Juris Viksna,
F. PontΓ©n,
K. Skryabin,
E. Birney,
Γ
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A. BΓΈrresen-Dale,
C. Caldas,
J. Foekens,
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J. Reis-Filho,
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C. Sotiriou,
G. Thoms,
L. V. vanβt Veer,
D. Birnbaum,
H. BlanchΓ©,
Pascal Boucher,
S. Boyault,
Jocelyne D Masson-Jacquemier,
I. PauportΓ©,
X. Pivot,
A. Vincent-Salomon,
E. Tabone,
C. Theillet,
I. Treilleux,
P. Bioulac-Sage,
T. Decaens,
D. Franco,
M. Gut,
Didier Samuel,
J. ZucmanβRossi,
R. Eils,
B. Brors,
J. Korbel,
A. Korshunov,
P. Landgraf,
H. Lehrach,
S. Pfister,
B. Radlwimmer,
G. Reifenberger,
Michael D. Taylor,
C. von Kalle,
P. Majumder,
P. Pederzoli,
R. Lawlor,
M. Delledonne,
A. Bardelli,
T. Gress,
D. Klimstra,
G. Zamboni,
Y. Nakamura,
S. Miyano,
Akihiro Fujimoto,
E. Campo,
S. de SanjosΓ©,
E. Montserrat,
M. GonzΓ‘lez-DΓaz,
P. Jares,
H. Himmelbauer,
S. BeΓ‘,
S. Aparicio,
D. Easton,
F. Collins,
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O. Kallioniemi,
T. Ley,
E. Liu,
B. Wainwright
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10 |
2010 |
10
π
|
|
π
|
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
83 auth.
R. Strausberg,
E. Feingold,
L. Grouse,
J. G. Derge,
R. Klausner,
F. Collins,
L. Wagner,
C. M. Shenmen,
G. Schuler,
S. Altschul,
B. Zeeberg,
K. Buetow,
C. Schaefer,
N. Bhat,
R. Hopkins,
...
Heather Jordan,
T. Moore,
S. I. Max,
Jun Wang,
Florence Y. Hsieh,
L. Diatchenko,
K. Marusina,
A. A. Farmer,
G. Rubin,
L. Hong,
M. Stapleton,
M. Soares,
M. F. Bonaldo,
T. Casavant,
T. Scheetz,
M. Brownstein,
T. Usdin,
Shiraki Toshiyuki,
Piero Carninci,
C. Prange,
Sam S Raha,
Naomi A Loquellano,
Garrick Peters,
R. Abramson,
Sara J Mullahy,
Stephanie A Bosak,
P. McEwan,
K. McKernan,
J. Malek,
P. Gunaratne,
S. Richards,
K. Worley,
Sarah Hale,
A. Garcia,
L. Gay,
Stephen W Hulyk,
D. Villalon,
D. Muzny,
E. Sodergren,
Xiuhua Lu,
R. Gibbs,
J. Fahey,
Erin Helton,
Mark Ketteman,
A. Madan,
Stephanie D Rodrigues,
Amy Sanchez,
Michelle Whiting,
A. Madan,
Alice C. Young,
Yuriy Shevchenko,
G. Bouffard,
R. Blakesley,
J. Touchman,
E. Green,
M. Dickson,
Alex C Rodriguez,
J. Grimwood,
J. Schmutz,
R. Myers,
Y. Butterfield,
M. Krzywinski,
U. Skalska,
D. Smailus,
A. Schnerch,
J. Schein,
Steven J. M. Jones,
M. Marra
|
10 |
2002 |
10
π
|
|
π
|
Conserved Role of Intragenic DNA Methylation in Regulating Alternative Promoters
26 auth.
A. Maunakea,
R. Nagarajan,
M. Bilenky,
Tracy J. Ballinger,
Cletus D'souza,
S. Fouse,
Brett E. Johnson,
C. Hong,
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Yongjun Zhao,
G. Turecki,
Allen D. Delaney,
R. Varhol,
N. Thiessen,
Ksenya Shchors,
...
V. Heine,
D. Rowitch,
X. Xing,
Christopher Fiore,
Maximiliaan Schillebeeckx,
Steven J. M. Jones,
D. Haussler,
M. Marra,
M. Hirst,
Ting Wang,
J. Costello
|
10 |
2010 |
10
π
|
|
π
|
The Genome of the Basidiomycetous Yeast and Human Pathogen Cryptococcus neoformans
54 auth.
B. Loftus,
E. Fung,
P. Roncaglia,
D. Rowley,
P. Amedeo,
D. Bruno,
J. Vamathevan,
Molly Miranda,
I. Anderson,
J. Fraser,
Jonathan E. Allen,
I. Bosdet,
M. Brent,
Readman Chiu,
T. Doering,
...
M. Donlin,
Cletus D'souza,
D. Fox,
Viktoriya Grinberg,
Jianmin Fu,
M. Fukushima,
B. Haas,
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G. Janbon,
Steven J. M. Jones,
H. Koo,
M. Krzywinski,
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R. Maiti,
M. Marra,
R. Marra,
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T. G. Mitchell,
M. PerΘea,
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S. Salzberg,
J. Schein,
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T. Utterback,
B. Wickes,
J. Wortman,
N. Wye,
J. Kronstad,
J. Lodge,
J. Heitman,
Ronald W. Davis,
C. Fraser,
R. Hyman
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9 |
2005 |
9
π
|
|
π
|
The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse
29 auth.
M. P. McLeod,
R. Warren,
W. Hsiao,
Naoto Araki,
M. Myhre,
C. Fernandes,
D. Miyazawa,
Wendy Wong,
Anita L Lillquist,
Dennis Y Wang,
M. Dosanjh,
H. Hara,
A. Petrescu,
Ryan D. Morin,
George S. Yang,
...
J. Stott,
J. Schein,
Heesun Shin,
D. Smailus,
A. Siddiqui,
M. Marra,
Steven J. M. Jones,
Robert W. Holt,
F. Brinkman,
K. Miyauchi,
M. Fukuda,
J. Davies,
W. Mohn,
L. Eltis
|
9 |
2006 |
9
π
|
|
π
|
Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma.
174 auth.
A. G. Robertson,
J. Shih,
J. Shih,
C. Yau,
E. Gibb,
Junna Oba,
K. Mungall,
J. Hess,
Vladislav Uzunangelov,
Vonn Walter,
Vonn Walter,
Ludmila V. Danilova,
T. Lichtenberg,
M. Kucherlapati,
P. Kimes,
...
M. Tang,
A. Penson,
ΓzgΓΌn Babur,
Rehan Akbani,
C. Bristow,
K. Hoadley,
L. Iype,
Matthew T. Chang,
Matthew T. Chang,
M. Abdel-Rahman,
Adrian Ally,
J. Auman,
M. Balasundaram,
S. Balu,
C. Benz,
R. Beroukhim,
I. Birol,
T. Bodenheimer,
Jay Bowen,
R. Bowlby,
Denise Brooks,
R. Carlsen,
C. Cebulla,
A. Cherniack,
A. Cherniack,
L. Chin,
Juok Cho,
E. Chuah,
Sudha Chudamani,
C. Cibulskis,
K. Cibulskis,
L. Cope,
S. Coupland,
T. DeFreitas,
John A. Demchok,
L. Desjardins,
Noreen Dhalla,
B. Esmaeli,
Ina Felau,
M. Ferguson,
S. Frazer,
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J. Gastier-Foster,
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M. Gerken,
J. Gershenwald,
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Huandong Sun,
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R. Tarnuzzer,
B. Taylor,
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|
9 |
2018 |
9
π
|
|
π
|
The Cancer Genome Atlas Pan-Cancer analysis project
271 auth.
C. Creighton,
Caleb F. Davis,
J. Drummond,
David Wheeler,
Adrian Ally,
M. Balasundaram,
I. Birol,
Y. Butterfield,
Andy Chu,
E. Chuah,
Hye-Jung E. Chun,
Noreen Dhalla,
R. Guin,
M. Hirst,
Carrie Hirst,
...
R. Holt,
Steven J. M. Jones,
Darlene Lee,
H. Li,
M. Marra,
Michael Mayo,
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R. Beroukhim,
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S. Freeman,
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Lixing Yang,
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Elizabeth Buda,
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Yan Shi,
Grace O. Silva,
Donghui Tan,
Umadevi Veluvolu,
S. Waring,
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Wei Zhao,
T. Bodenheimer,
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Stuart R Jeffreys,
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Ludmila V. Danilova,
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D. Weisenberger,
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C. Sougnez,
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T. Knijnenburg,
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D. Dooling,
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C. Fronick,
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M. Wendl,
R. Wilson,
T. Wylie
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9 |
2013 |
9
π
|
|
π
|
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
114 auth.
D. Gerhard,
L. Wagner,
E. Feingold,
C. M. Shenmen,
L. Grouse,
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J. Malek
|
9 |
2004 |
9
π
|
|
π
|
Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles
198 auth.
F. Farshidfar,
Siyuan Zheng,
M. Gingras,
Yulia Newton,
J. Shih,
A. G. Robertson,
T. Hinoue,
K. Hoadley,
E. Gibb,
J. Roszik,
K. Covington,
Chia-Chin Wu,
E. Shinbrot,
Nicolas Stransky,
A. Hegde,
...
J. D. Yang,
E. Reznik,
S. Sadeghi,
C. Pedamallu,
A. Ojesina,
J. Hess,
J. Auman,
S. Rhie,
R. Bowlby,
M. Borad,
A. Zhu,
Josh M Stuart,
C. Sander,
Rehan Akbani,
A. Cherniack,
V. Deshpande,
T. Mounajjed,
W. Foo,
M. Torbenson,
D. Kleiner,
P. Laird,
D. Wheeler,
A. McRee,
O. Bathe,
J. Andersen,
N. Bardeesy,
L. Roberts,
L. Kwong,
Loretta K. Allotey,
Adrian Ally,
D. Alvaro,
Elizabeth L. Appelbaum,
Arshi Arora,
M. Balasundaram,
S. Balu,
S. Baylin,
R. Beroukhim,
Mario Berrios,
T. Bodenheimer,
L. Boice,
Moiz Bootwalla,
Jay Bowen,
M. Bragazzi,
Denise Brooks,
V. Cardinale,
R. Carlsen,
G. Carpino,
AndrΓ© L. Carvalho,
R. Chaiteerakij,
V. Chandan,
L. Chin,
Juok Cho,
Gina Choe,
E. Chuah,
Sudha Chudamani,
C. Cibulskis,
M. Cordes,
D. Crain,
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A. D. De Rose,
T. DeFreitas,
John A. Demchok,
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A. Franchitto,
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G. Genovese,
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F. Giuliante,
G. Grazi,
D. Hayes,
A. Hegde,
David I Heiman,
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R. Holt,
A. Hoyle,
Mei Huang,
C. Hutter,
S. Jefferys,
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Corbin D. Jones,
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K. Leraas,
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Pei Lin,
Wenbin Liu,
Jia Liu,
Laxmi Lolla,
Yiling Lu,
Yussanne Ma,
D. Mallery,
E. Mardis,
M. Marra,
M. Matsushita,
Michael Mayo,
M. McLellan,
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K. Mungall,
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R. Naresh,
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Yan Shi,
R. Shroff,
J. Simons,
Payal Sipahimalani,
Tara J. Skelly,
H. Sofia,
Matthew G. Soloway,
H. Stoppler,
Josh M Stuart,
Qiang Sun,
Angela Tam,
Donghui Tan,
R. Tarnuzzer,
N. Thiessen,
L. Thorne,
D. J. Van Den Berg,
Umadevi Veluvolu,
R. Verhaak,
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Zhining Wang,
J. Weinstein,
D. Weisenberger,
R. Wilson,
L. Wise,
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Ye Wu,
Liu Xi,
Liming Yang,
J. Zenklusen,
Hailei Zhang,
J. Zhang,
E. Zmuda
|
8 |
2017 |
8
π
|
|
π
|
Analysis of the Genome and Transcriptome of Cryptococcus neoformans var. grubii Reveals Complex RNA Expression and Microevolution Leading to Virulence Attenuation
55 auth.
G. Janbon,
Kate L. Ormerod,
D. Paulet,
E. Byrnes,
V. Yadav,
Gautam Chatterjee,
Nandita Mullapudi,
C. Hon,
R. B. Billmyre,
F. Brunel,
Yong-Sun Bahn,
Weidong Chen,
Yuan Chen,
E. W. L. Chow,
J. Coppee,
...
Anna Floyd-Averette,
C. Gaillardin,
K. J. Gerik,
J. Goldberg,
Sara Gonzalez-Hilarion,
Sharvari Gujja,
J. Hamlin,
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G. Ianiri,
Steven J. M. Jones,
C. Kodira,
Lukasz Kozubowski,
Woei C. Lam,
M. Marra,
L. Mesner,
P. Mieczkowski,
FreΜdeΜrique Moyrand,
Kirsten Nielsen,
Kirsten Nielsen,
Caroline Proux,
Tristan Rossignol,
J. Schein,
Sheng Sun,
Carolin Wollschlaeger,
Ian A. Wood,
Qiandong Zeng,
C. NeuvΓ©glise,
C. Newlon,
J. Perfect,
J. Lodge,
A. Idnurm,
J. Stajich,
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J. Kronstad,
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J. Fraser,
Christina A. Cuomo,
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|
8 |
2014 |
8
π
|
|
π
|
Characterization of HPV and host genome interactions in primary head and neck cancers
315 auth.
Michael G Parfenov,
C. Pedamallu,
Nils Gehlenborg,
Nils Gehlenborg,
S. Freeman,
Ludmila V. Danilova,
C. Bristow,
Semin Lee,
Angela Hadjipanayis,
E. Ivanova,
M. Wilkerson,
A. Protopopov,
Lixing Yang,
S. Seth,
Xingzhi Song,
...
Jiabin Tang,
X. Ren,
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A. Pantazi,
Netty G Santoso,
A. W. Xu,
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Dong Zeng,
C. Bristow,
Angela Hadjipanayis,
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Tod D. Casasent,
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J. Weinstein,
L. Diao,
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Youhong Fan,
Jinze Liu,
Kai Wang,
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8 |
2014 |
8
π
|
|
π
|
Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma.
231 auth.
Siyuan Zheng,
A. Cherniack,
N. Dewal,
R. Moffitt,
Ludmila V. Danilova,
Bradley A. Murray,
A. LerΓ‘rio,
T. Else,
T. Knijnenburg,
G. Ciriello,
Seungchan Kim,
G. AssiΓ©,
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Adrian Ally,
M. Balasundaram,
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R. Guin,
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H. Li,
Lynette Lim,
Yussanne Ma,
M. Marra,
Michael Mayo,
Richard A. Moore,
A. Mungall,
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S. Sadeghi,
J. Schein,
Payal Sipahimalani,
Angela Tam,
N. Thiessen,
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M. Kroiss,
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S. Jefferys,
S. Meng,
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Linda Amble,
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Z. Ju,
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G. Mills,
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Wenyi Wang,
E. Shinbrot,
M. Reincke,
J. Weinstein,
S. Meier,
T. DeFreitas
|
8 |
2016 |
8
π
|
