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James M. Melott

Bioinform., Nucleic Acids Res., Nature Methods, FResearch, Cancer Research
10
Role
Title
Level Year L/R
🐜 The Cancer Genome Atlas Pan-Cancer analysis project
271 auth. C. Creighton, Caleb F. Davis, J. Drummond, David Wheeler, Adrian Ally, M. Balasundaram, I. Birol, Y. Butterfield, Andy Chu, E. Chuah, Hye-Jung E. Chun, Noreen Dhalla, R. Guin, M. Hirst, Carrie Hirst, ... R. Holt, Steven J. M. Jones, Darlene Lee, H. Li, M. Marra, Michael Mayo, Richard A. Moore, A. Mungall, A. G. Robertson, J. Schein, Payal Sipahimalani, Angela Tam, N. Thiessen, R. Varhol, R. Beroukhim, Ami S. Bhatt, Angela N. Brooks, A. Cherniack, S. Freeman, S. Gabriel, E. Helman, Joonil Jung, M. Meyerson, A. Ojesina, C. Pedamallu, G. Saksena, S. Schumacher, B. Tabak, Travis Zack, E. Lander, C. Bristow, Angela Hadjipanayis, Psalm S. Haseley, R. Kucherlapati, Semin Lee, E. Lee, Lovelace J. Luquette, Harshad S. Mahadeshwar, A. Pantazi, Michael G Parfenov, Peter J. Park, A. Protopopov, X. Ren, Netty G Santoso, J. Seidman, S. Seth, Xingzhi Song, Jiabin Tang, Ruibin Xi, A. W. Xu, Lixing Yang, D. Zeng, J. Auman, S. Balu, Elizabeth Buda, C. Fan, K. Hoadley, Corbin D. Jones, S. Meng, P. Mieczkowski, J. Parker, C. Perou, J. Roach, Yan Shi, Grace O. Silva, Donghui Tan, Umadevi Veluvolu, S. Waring, M. Wilkerson, Junyuan Wu, Wei Zhao, T. Bodenheimer, D. Hayes, A. Hoyle, Stuart R Jeffreys, Lisle E. Mose, J. Simons, Mathew G. Soloway, S. Baylin, B. Berman, Moiz Bootwalla, Ludmila V. Danilova, J. Herman, T. Hinoue, P. Laird, S. Rhie, Hui Shen, T. Triche, D. Weisenberger, S. Carter, K. Cibulskis, L. Chin, Jianhua Zhang, G. Getz, C. Sougnez, Min Wang, H. Dinh, H. Doddapaneni, Richard A. Gibbs, P. Gunaratne, Yingrui Han, D. Kalra, C. Kovar, L. Lewis, M. Morgan, Donna Morton, D. Muzny, Jeff G. Reid, Liu Xi, Juok Cho, D. Dicara, S. Frazer, Nils Gehlenborg, David I Heiman, Jaegil Kim, Mike S. Lawrence, Pei Lin, Yingchun Liu, M. Noble, P. Stojanov, Douglas Voet, Hailei Zhang, L. Zou, C. Stewart, Brady Bernard, Ryan Bressler, Andrea Eakin, L. Iype, T. Knijnenburg, R. Kramer, R. Kreisberg, Kalle Leinonen, Jake Lin, Yuexin Liu, Michael Miller, Sheila M. Reynolds, Hector Rovira, I. Shmulevich, V. Thorsson, D. Yang, Wei Zhang, S. Amin, Chang-Jiun Wu, Chia-Chin Wu, Rehan Akbani, Kenneth D Aldape, K. Baggerly, B. Broom, Tod D. Casasent, James A. Cleland, C. Creighton, Deepti Dodda, M. Edgerton, Leng Han, Shelley M Herbrich, Z. Ju, Hoon Kim, S. Lerner, Jun Li, Han Liang, Wenbin Liu, P. Lorenzi, Yiling Lu, James M. Melott, G. Mills, L. Nguyen, Xiaoping Su, R. Verhaak, Wenyi Wang, J. Weinstein, Andrew W. Wong, Yang Yang, Jun Yao, Rong Yao, K. Yoshihara, Yuan Yuan, Alfred K Yung, Nianxiang Zhang, Siyuan Zheng, Michael J. Ryan, D. Kane, B. A. Aksoy, G. Ciriello, Gideon Dresdner, Jianjiong Gao, Benjamin E. Gross, A. Jacobsen, A. Kahles, M. Ladanyi, William Lee, K. Lehmann, Martin L. Miller, Ricardo Ramirez, G. RÀtsch, B. Reva, Christopher Sander, N. Schultz, Y. Şenbabaoğlu, R. Shen, Rileen Sinha, S. O. Sumer, Yichao Sun, B. Taylor, Nils Weinhold, S. Fei, P. Spellman, Christopher J. Benz, Daniel E. Carlin, Melisssa Cline, Brian Craft, K. Ellrott, M. Goldman, D. Haussler, Singer Ma, S. Ng, Evan O. Paull, Amie Radenbaugh, S. Salama, Artem Sokolov, Joshua M. Stuart, Teresa Swatloski, Vladislav Uzunangelov, Peter Waltman, C. Yau, Jing-Ping Zhu, Stanley R. Hamilton, S. Abbott, R. Abbott, N. Dees, K. Delehaunty, Li Ding, D. Dooling, James M. Eldred, C. Fronick, Robert S. Fulton, L. Fulton, C. Kandoth, D. Koboldt, D. Larson, T. Ley, Ling Lin, Charles Lu, Vincent Magrini, E. Mardis, M. McLellan, Joshua F. McMichael, C. A. Miller, M. O'Laughlin, C. Pohl, Heather K. Schmidt, Scott M. Smith, Jason R. Walker, J. Wallis, M. Wendl, R. Wilson, T. Wylie
9 2013
9
🐜
🐜 TCGASpliceSeq a compendium of alternative mRNA splicing in cancer
8 auth. Michael C. Ryan, Wing Chung Wong, Robert Brown, Rehan Akbani, X. Su, B. Broom, ... James M. Melott, J. Weinstein
8 2015
8
🐜
🐜 TransVar: a multilevel variant annotator for precision genomics
11 auth. Wanding Zhou, Tenghui Chen, Zechen Chong, M. A. Rohrdanz, James M. Melott, Chris Wakefield, ... Jia Zeng, J. Weinstein, F. Meric-Bernstam, G. Mills, Ken Chen
6 2015
6
🐜
🐜 Interactive Clustered Heat Map Builder: An easy web-based tool for creating sophisticated clustered heat maps
7 auth. Michael C. Ryan, Mark D Stucky, Chris Wakefield, James M. Melott, Rehan Akbani, J. Weinstein, ... B. Broom
6 2019
6
🐜
🐜 A Galaxy Implementation of Next-Generation Clustered Heatmaps for Interactive Exploration of Molecular Profiling Data.
11 auth. B. Broom, Michael C. Ryan, Robert Brown, Futa Ikeda, Mark D Stucky, D. Kane, ... James M. Melott, Chris Wakefield, Tod D. Casasent, Rehan Akbani, J. Weinstein
5 2017
5
🐜
🐜 SoS Notebook: an interactive multi-language data analysis environment
9 auth. Bo Peng, Gao Wang, Jun Ma, M. Leong, Chris Wakefield, James M. Melott, ... Yulun Chiu, Di Du, J. Weinstein
3 2018
3
🐜
🐜 RPPA SPACE: an R package for normalization and quantitation of Reverse-Phase Protein Array data
12 auth. H. Shehwana, Shwetha V. Kumar, James M. Melott, M. A. Rohrdanz, Chris Wakefield, Z. Ju, ... D. Siwak, Yiling Lu, B. Broom, J. Weinstein, G. Mills, Rehan Akbani
2 2022
2
🐜
🦁 PathwaysWeb: a gene pathways API with directional interactions, expanded gene ontology, and versioning
James M. Melott, J. Weinstein, B. Broom
1 2015
1
🦁
🐜 OmicPioneer-sc: an integrated, interactive visualization environment for single-cell sequencing data
13 auth. J. Weinstein, M. A. Rohrdanz, Mark D Stucky, James M. Melott, Jun Ma, V. Mohanty, G. Manyam, Chris Wakefield, Ken Chen, N. Navin, ... Michael C. Ryan, Rehan Akbani, B. Broom
1 2020
1
🐜
🦁 Reverse-Phase Protein Array Super Position and Concentration Evaluation [R package RPPASPACE version 1.0.7]
7 auth. James M. Melott, Paul L. Roebuck, K. Coombes, S. Neeley, C. Joy, Jianhua Hu, ... K. Baggerly
0 2020
0
🦁