T. Kortemme's Profile

Role	Title	Level	Year	L/R
🐜	A SARS-CoV-2 Protein Interaction Map Reveals Targets for Drug-Repurposing 125 auth. D. Gordon, Gwendolyn M. Jang, Mehdi Bouhaddou, Jiewei Xu, K. Obernier, K. White, Matthew J. O’Meara, V. Rezelj, Jeffrey Z. Guo, D. Swaney, Tia A. Tummino, Ruth Hüttenhain, Robyn M. Kaake, Alicia L. Richards, B. Tutuncuoglu, ... Helene Foussard, J. Batra, Kelsey M. Haas, Mayank Modak, Minkyu Kim, Paige Haas, Benjamin J. Polacco, Hannes Braberg, Jacqueline M. Fabius, Manon Eckhardt, Margaret Soucheray, M. J. Bennett, Merve Cakir, Michael J. McGregor, Qiongyu Li, Bjoern Meyer, F. Roesch, T. Vallet, Alice Mac Kain, Lisa Miorin, Elena Moreno, Zun Zar Chi Naing, Yuan Zhou, S. Peng, Ying Shi, Ziyang Zhang, W. Shen, I. T. Kirby, James E. Melnyk, John S. Chorba, Kevin Lou, Shizhong A. Dai, Inigo Barrio-Hernandez, D. Memon, Claudia Hernandez-Armenta, Jiankun Lyu, Christopher J. P. Mathy, Tina Perica, K. B. Pilla, Sai J. Ganesan, Daniel J. Saltzberg, R. Rakesh, Xi Liu, S. Rosenthal, Lorenzo Calviello, S. Venkataramanan, José M Liboy-Lugo, Yizhu Lin, Xi-Ping Huang, Yongfeng Liu, S. Wankowicz, M. Bohn, M. Safari, Fatima S. Ugur, C. Koh, Nastaran Sadat Savar, Q. D. Tran, Djoshkun Shengjuler, S. Fletcher, M. C. O’Neal, Yiming Cai, Jason C. J. Chang, D. Broadhurst, Saker Klippsten, P. P. Sharp, Nicole A. Wenzell, Duygu Kuzuoglu-Ozturk, Hao-Yuan Wang, R. Trenker, Janet M. Young, D. A. Cavero, J. Hiatt, Theodore L. Roth, Ujjwal Rathore, Advait Subramanian, Julia Noack, Mathieu Hubert, R. Stroud, A. Frankel, O. Rosenberg, K. Verba, D. Agard, M. Ott, M. Emerman, N. Jura, M. von Zastrow, E. Verdin, A. Ashworth, O. Schwartz, C. d’Enfert, Shaeri Mukherjee, Matt Jacobson, Harmit S. Malik, D. Fujimori, T. Ideker, C. Craik, S. Floor, J. Fraser, J. Gross, A. Sali, B. Roth, D. Ruggero, J. Taunton, T. Kortemme, P. Beltrão, M. Vignuzzi, A. García-Sastre, K. Shokat, B. Shoichet, N. Krogan	11	2020	11 🐜
🐜	ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules. 32 auth. Andrew Leaver-Fay, M. Tyka, Steven M. Lewis, Oliver F. Lange, James M. Thompson, Ron Jacak, Kristian Kaufman, P. Renfrew, Colin A. Smith, W. Sheffler, Ian W. Davis, Seth Cooper, Adrien Treuille, D. J. Mandell, Florian Richter, ... Y. Ban, S. Fleishman, J. Corn, David E. Kim, Sergey Lyskov, Monica Berrondo, S. Mentzer, Zoran Popovic, J. Havranek, J. Karanicolas, Rhiju Das, J. Meiler, T. Kortemme, Jeffrey J. Gray, B. Kuhlman, D. Baker, P. Bradley	10	2011	10 🐜
🐜	The Rosetta all-atom energy function for macromolecular modeling and design 20 auth. Rebecca F. Alford, Andrew Leaver-Fay, J. Jeliazkov, Matthew J. O’Meara, F. DiMaio, Hahnbeom Park, M. Shapovalov, P. Renfrew, V. Mulligan, K. Kappel, ... Jason W. Labonte, M. Pacella, Richard Bonneau, P. Bradley, Roland L. Dunbrack, Rhiju Das, D. Baker, B. Kuhlman, T. Kortemme, Jeffrey J. Gray	10	2017	10 🐜
🐜	The Global Phosphorylation Landscape of SARS-CoV-2 Infection 78 auth. Mehdi Bouhaddou, D. Memon, Bjoern Meyer, K. White, V. Rezelj, Miguel Correa Marrero, Benjamin J. Polacco, James E. Melnyk, Svenja Ulferts, Robyn M. Kaake, J. Batra, Alicia L. Richards, Erica Stevenson, D. Gordon, Ajda Rojc, ... K. Obernier, Jacqueline M. Fabius, Margaret Soucheray, Lisa Miorin, Elena Moreno, C. Koh, Q. D. Tran, Alexandra Hardy, R. Robinot, T. Vallet, Benjamin E. Nilsson-Payant, Claudia Hernandez-Armenta, Alistair S. Dunham, Sebastian Weigang, Julian Knerr, Mayank Modak, Diego Quintero, Yuan Zhou, Aurélien Dugourd, Alberto Valdeolivas, T. Patil, Qiongyu Li, Ruth Hüttenhain, Merve Cakir, Monita Muralidharan, Minkyu Kim, Gwendolyn M. Jang, B. Tutuncuoglu, J. Hiatt, Jeffrey Z. Guo, Jiewei Xu, Sophia Bouhaddou, Christopher J. P. Mathy, A. Gaulton, Emma J. Manners, Eloy Felix, Ying Shi, Marisa A. Goff, Jean K. Lim, Timothy Mcbride, M. C. O’Neal, Yiming Cai, Jason C. J. Chang, D. Broadhurst, Saker Klippsten, E. de Wit, A. Leach, T. Kortemme, B. Shoichet, M. Ott, J. Saez-Rodriguez, B. tenOever, R. Mullins, E. Fischer, G. Kochs, R. Grosse, A. García-Sastre, M. Vignuzzi, J. R. Johnson, K. Shokat, D. Swaney, P. Beltrão, N. Krogan	9	2020	9 🐜
🦁	A simple physical model for binding energy hot spots in protein–protein complexes T. Kortemme, D. Baker	9	2002	9 🦁
🐜	Global landscape of HIV–human protein complexes 37 auth. S. Jäger, Peter Cimermancic, N. Gulbahce, Jeffrey R. Johnson, K. McGovern, S. Clarke, M. Shales, Gaelle Mercenne, L. Pache, Kathy Li, Hilda Hernandez, Gwendolyn M. Jang, Shoshannah L. Roth, E. Akiva, John Marlett, ... M. Stephens, Iván D’Orso, Jason D. Fernandes, M. E. Fahey, Cathal S. Mahon, A. O’Donoghue, A. Todorovic, J. Morris, D. Maltby, T. Alber, G. Cagney, F. Bushman, John A. Young, S. Chanda, W. Sundquist, T. Kortemme, Ryan D. Hernandez, C. Craik, A. Burlingame, A. Sali, A. Frankel, N. Krogan	9	2011	9 🐜
🐜	Macromolecular modeling and design in Rosetta: recent methods and frameworks 108 auth. J. Leman, Brian D. Weitzner, Steven M. Lewis, Jared Adolf-Bryfogle, Nawsad Alam, Rebecca F. Alford, Melanie L. Aprahamian, D. Baker, Kyle A. Barlow, P. Barth, B. Basanta, B. Bender, Kristin M Blacklock, J. Bonet, S. Boyken, ... P. Bradley, C. Bystroff, Patrick Conway, Seth Cooper, B. Correia, B. Coventry, Rhiju Das, R. M. de Jong, F. DiMaio, Lorna Dsilva, Roland L. Dunbrack, Alex Ford, Brandon Frenz, Darwin Y. Fu, C. Geniesse, Lukasz Goldschmidt, R. Gowthaman, Jeffrey J. Gray, D. Gront, Sharon L. Guffy, S. Horowitz, Po-Ssu Huang, T. Huber, T. Jacobs, J. Jeliazkov, David K. Johnson, K. Kappel, J. Karanicolas, Hamed Khakzad, Karen R. Khar, S. Khare, Firas Khatib, A. Khramushin, I. King, Robert Kleffner, B. Koepnick, T. Kortemme, G. Kuenze, B. Kuhlman, Daisuke Kuroda, Jason W. Labonte, J. Lai, Gideon Lapidoth, Andrew Leaver-Fay, S. Lindert, Thomas W. Linsky, N. London, Joseph H. Lubin, Sergey Lyskov, Jack B. Maguire, L. Malmström, E. Marcos, Orly Marcu, Nicholas A. Marze, J. Meiler, Rocco Moretti, V. Mulligan, S. Nerli, Christoffer H Norn, Shane Ó’Conchúir, Noah Ollikainen, S. Ovchinnikov, M. Pacella, Xingjie Pan, Hahnbeom Park, Ryan E. Pavlovicz, Manasi A. Pethe, B. Pierce, K. B. Pilla, Barak Raveh, P. Renfrew, S. Burman, A. Rubenstein, Marion Sauer, A. Scheck, W. Schief, Ora Schueler‐Furman, Yuval Sedan, A. M. Sevy, N. Sgourakis, Lei Shi, J. Siegel, Daniel‐Adriano Silva, Shannon T. Smith, Yifan Song, Amelie Stein, M. Szegedy, Frank D. Teets, Summer B. Thyme, R. Wang, A. Watkins, Lior Zimmerman, Richard Bonneau	9	2020	9 🐜
🐜	Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. 198 auth. D. Gordon, J. Hiatt, Mehdi Bouhaddou, V. Rezelj, Svenja Ulferts, Hannes Braberg, Alexander S. Jureka, K. Obernier, Jeffrey Z. Guo, J. Batra, Robyn M. Kaake, A. Weckstein, T. Owens, Meghna Gupta, S. Pourmal, ... E. Titus, Merve Cakir, Margaret Soucheray, Michael J. McGregor, Z. Çakır, Gwendolyn M. Jang, Matthew J. O’Meara, Tia A. Tummino, Ziyang Zhang, Helene Foussard, Ajda Rojc, Yuan Zhou, Dmitry Kuchenov, Ruth Hüttenhain, Jiewei Xu, Manon Eckhardt, D. Swaney, Jacqueline M. Fabius, Manisha Ummadi, B. Tutuncuoglu, Ujjwal Rathore, Mayank Modak, Paige Haas, Kelsey M. Haas, Zun Zar Chi Naing, Ernst H. Pulido, Ying Shi, Inigo Barrio-Hernandez, D. Memon, Eirini Petsalaki, Alistair S. Dunham, Miguel Correa Marrero, David F. Burke, C. Koh, T. Vallet, J. Silvas, C. Azumaya, Christian B. Billesbølle, A. Brilot, M. Campbell, Amy Diallo, M. Dickinson, D. Diwanji, N. Herrera, N. Hoppe, H. Kratochvil, Yanxin Liu, G. Merz, M. Moritz, Henry C. Nguyen, C. Nowotny, C. Puchades, A. Rizo, U. Schulze-Gahmen, A. Smith, Ming Sun, I. Young, Jianhua Zhao, D. Asarnow, J. Biel, Alisa Bowen, Julian R. Braxton, Jen Chen, C. Chio, U. S. Chio, I. Deshpande, Loan Doan, B. Faust, S. Flores, M. Jin, Kate Kim, V. Lam, Fei Li, Junrui Li, Yen-Li Li, Yang Li, Xi Liu, Megan Lo, Kyle E. Lopez, A. Melo, F. Moss, P. Nguyen, J. Paulino, K. Pawar, J. Peters, T. Pospiech, M. Safari, S. Sangwan, K. Schaefer, Paul V. Thomas, A. Thwin, R. Trenker, E. Tse, T. Tsui, Feng Wang, Natalie Whitis, Zanlin Yu, Kaihua Zhang, Yang Zhang, Fengbo Zhou, Daniel J. Saltzberg, Anthony J. Hodder, A. S. Shun-Shion, Daniel M. Williams, K. White, R. Rosales, Thomas Kehrer, Lisa Miorin, Elena Moreno, A. Patel, Suzannah J. Rihn, M. Khalid, Albert Vallejo-Gracia, P. Fozouni, C. Simoneau, Theodore L. Roth, David Wu, M. Karim, M. Ghoussaini, I. Dunham, F. Berardi, Sebastian Weigang, Maxime Chazal, Jisoo Park, James Logue, M. McGrath, S. Weston, Robert E. Haupt, C. Hastie, M. Elliott, Fiona Brown, Kerry A. Burness, Elaine Reid, Mark Dorward, Clare Johnson, S. Wilkinson, Anna Geyer, D. Giesel, Carla Baillie, S. Raggett, Hannah Leech, R. Toth, Nicola Goodman, Kathleen C. Keough, Abigail L. Lind, Reyna Klesh, K. Hemphill, Jared Carlson-Stevermer, Jennifer Oki, K. Holden, T. Maures, K. Pollard, A. Sali, D. Agard, Yifan Cheng, J. Fraser, A. Frost, N. Jura, T. Kortemme, A. Manglik, D. Southworth, R. Stroud, D. Alessi, Paul Davies, M. Frieman, T. Ideker, C. Abate, N. Jouvenet, G. Kochs, B. Shoichet, M. Ott, M. Palmarini, K. Shokat, A. García-Sastre, J. Rassen, R. Grosse, O. Rosenberg, K. Verba, C. Basler, M. Vignuzzi, A. Peden, P. Beltrão, N. Krogan	9	2020	9 🐜
🐬	Helix propensities of the amino acids measured in alanine‐based peptides without helix‐stabilizing side‐chain interactions A. Chakrabartty, T. Kortemme, R. L. Baldwin	9	1994	9 🐬
🦁	Computational Alanine Scanning of Protein-Protein Interfaces T. Kortemme, David E. Kim, D. Baker	9	2004	9 🦁
🐜	Ca2+ indicators based on computationally redesigned calmodulin-peptide pairs. 7 auth. A. Palmer, M. Giacomello, T. Kortemme, S. Hires, V. Lev-Ram, D. Baker, ... R. Tsien	8	2006	8 🐜
🦁	An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes. T. Kortemme, A. Morozov, D. Baker	8	2003	8 🦁
🐜	A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing 100 auth. D. Gordon, Gwendolyn M. Jang, Mehdi Bouhaddou, Jiewei Xu, K. Obernier, Matthew J. O’Meara, Jeffrey Z. Guo, D. Swaney, Tia A. Tummino, Ruth Hüttenhain, Robyn M. Kaake, Alicia L. Richards, B. Tutuncuoglu, Helene Foussard, J. Batra, ... Kelsey M. Haas, Mayank Modak, Minkyu Kim, Paige Haas, Benjamin J. Polacco, Hannes Braberg, Jacqueline M. Fabius, Manon Eckhardt, Margaret Soucheray, M. J. Bennett, Merve Cakir, Michael J. McGregor, Qiongyu Li, Zun Zar Chi Naing, Yuan Zhou, S. Peng, I. T. Kirby, James E. Melnyk, John S. Chorba, Kevin Lou, Shizhong A. Dai, W. Shen, Ying Shi, Ziyang Zhang, Inigo Barrio-Hernandez, D. Memon, Claudia Hernandez-Armenta, Christopher J. P. Mathy, Tina Perica, K. B. Pilla, Sai J. Ganesan, Daniel J. Saltzberg, Rakesh Ramachandran, Xi Liu, S. Rosenthal, Lorenzo Calviello, S. Venkataramanan, José M Liboy-Lugo, Yizhu Lin, S. Wankowicz, M. Bohn, P. P. Sharp, R. Trenker, Janet M. Young, D. A. Cavero, J. Hiatt, Theodore L. Roth, Ujjwal Rathore, Advait Subramanian, Julia Noack, Mathieu Hubert, F. Roesch, T. Vallet, Björn Meyer, K. White, Lisa Miorin, O. Rosenberg, K. Verba, D. Agard, M. Ott, M. Emerman, D. Ruggero, A. García-Sastre, N. Jura, M. von Zastrow, J. Taunton, A. Ashworth, O. Schwartz, M. Vignuzzi, C. d’Enfert, Shaeri Mukherjee, Matt Jacobson, Harmit S. Malik, D. Fujimori, T. Ideker, C. Craik, S. Floor, J. Fraser, J. Gross, A. Sali, T. Kortemme, P. Beltrão, K. Shokat, B. Shoichet, N. Krogan	8	2020	8 🐜