|
🐜
|
Proteome-wide covalent ligand discovery in native biological systems
12 auth.
Keriann M. Backus,
B. Correia,
Kenneth M. Lum,
Stefano Forli,
Benjamin D. Horning,
G. González-Páez,
...
Sandip Chatterjee,
Bryan R. Lanning,
J. Teijaro,
A. Olson,
D. Wolan,
B. Cravatt
|
9 |
2016 |
9
🐜
|
|
🐜
|
Macromolecular modeling and design in Rosetta: recent methods and frameworks
108 auth.
J. Leman,
Brian D. Weitzner,
Steven M. Lewis,
Jared Adolf-Bryfogle,
Nawsad Alam,
Rebecca F. Alford,
Melanie L. Aprahamian,
D. Baker,
Kyle A. Barlow,
P. Barth,
B. Basanta,
B. Bender,
Kristin M Blacklock,
J. Bonet,
S. Boyken,
...
P. Bradley,
C. Bystroff,
Patrick Conway,
Seth Cooper,
B. Correia,
B. Coventry,
Rhiju Das,
R. M. de Jong,
F. DiMaio,
Lorna Dsilva,
Roland L. Dunbrack,
Alex Ford,
Brandon Frenz,
Darwin Y. Fu,
C. Geniesse,
Lukasz Goldschmidt,
R. Gowthaman,
Jeffrey J. Gray,
D. Gront,
Sharon L. Guffy,
S. Horowitz,
Po-Ssu Huang,
T. Huber,
T. Jacobs,
J. Jeliazkov,
David K. Johnson,
K. Kappel,
J. Karanicolas,
Hamed Khakzad,
Karen R. Khar,
S. Khare,
Firas Khatib,
A. Khramushin,
I. King,
Robert Kleffner,
B. Koepnick,
T. Kortemme,
G. Kuenze,
B. Kuhlman,
Daisuke Kuroda,
Jason W. Labonte,
J. Lai,
Gideon Lapidoth,
Andrew Leaver-Fay,
S. Lindert,
Thomas W. Linsky,
N. London,
Joseph H. Lubin,
Sergey Lyskov,
Jack B. Maguire,
L. Malmström,
E. Marcos,
Orly Marcu,
Nicholas A. Marze,
J. Meiler,
Rocco Moretti,
V. Mulligan,
S. Nerli,
Christoffer H Norn,
Shane Ó’Conchúir,
Noah Ollikainen,
S. Ovchinnikov,
M. Pacella,
Xingjie Pan,
Hahnbeom Park,
Ryan E. Pavlovicz,
Manasi A. Pethe,
B. Pierce,
K. B. Pilla,
Barak Raveh,
P. Renfrew,
S. Burman,
A. Rubenstein,
Marion Sauer,
A. Scheck,
W. Schief,
Ora Schueler‐Furman,
Yuval Sedan,
A. M. Sevy,
N. Sgourakis,
Lei Shi,
J. Siegel,
Daniel‐Adriano Silva,
Shannon T. Smith,
Yifan Song,
Amelie Stein,
M. Szegedy,
Frank D. Teets,
Summer B. Thyme,
R. Wang,
A. Watkins,
Lior Zimmerman,
Richard Bonneau
|
9 |
2020 |
9
🐜
|
|
🐢
|
Deciphering interaction fingerprints from protein molecular surfaces using geometric deep learning
7 auth.
P. Gainza,
Freyr Sverrisson,
F. Monti,
E. Rodolà,
Davide Boscaini,
M. Bronstein,
...
B. Correia
|
9 |
2019 |
9
🐢
|
|
🦁
|
Proof of principle for epitope-focused vaccine design
27 auth.
B. Correia,
J. Bates,
Rebecca J. Loomis,
G. Baneyx,
Chris Carrico,
J. Jardine,
P. Rupert,
C. Correnti,
O. Kalyuzhniy,
Vinayak Vittal,
M. Connell,
Eric Stevens,
Alexandria Schroeter,
Man Chen,
Skye MacPherson,
...
Andreia M Serra,
Yumiko Adachi,
M. Holmes,
Yuxing Li,
R. Klevit,
B. Graham,
R. Wyatt,
David Baker,
R. Strong,
J. Crowe,
Philip R. Johnson,
W. Schief
|
8 |
2014 |
8
🦁
|
|
🐬
|
Global profiling of lysine reactivity and ligandability in the human proteome.
S. M. Hacker,
Keriann M. Backus,
Michael R. Lazear,
Stefano Forli,
B. Correia,
B. Cravatt
|
8 |
2017 |
8
🐬
|
|
🐜
|
Scaffolding protein functional sites using deep learning
24 auth.
Jue Wang,
S. Lisanza,
David Juergens,
D. Tischer,
Joseph L. Watson,
Karla M. Castro,
R. Ragotte,
A. Saragovi,
L. Milles,
M. Baek,
...
I. Anishchenko,
Wei Yang,
Derrick R. Hicks,
Marc Expòsit,
Thomas Schlichthaerle,
Jung-Ho Chun,
J. Dauparas,
N. Bennett,
B. Wicky,
Andrew Muenks,
F. DiMaio,
B. Correia,
S. Ovchinnikov,
D. Baker
|
8 |
2022 |
8
🐜
|
|
🐜
|
Computation-Guided Backbone Grafting of a Discontinuous Motif onto a Protein Scaffold
13 auth.
Mihai L. Azoitei,
B. Correia,
Y. Ban,
Chris Carrico,
O. Kalyuzhniy,
Lei Chen,
Alexandria Schroeter,
Po-Ssu Huang,
J. McLellan,
P. Kwong,
...
D. Baker,
R. Strong,
W. Schief
|
7 |
2011 |
7
🐜
|
|
🦁
|
Computational design of epitope-scaffolds allows induction of antibodies specific for a poorly immunogenic HIV vaccine epitope.
19 auth.
B. Correia,
Y. Ban,
M. Holmes,
Hengyu Xu,
K. Ellingson,
Z. Kraft,
Chris Carrico,
E. Boni,
D. Sather,
C. Zenobia,
...
K. Burke,
T. Bradley-Hewitt,
Jessica F. Bruhn-Johannsen,
O. Kalyuzhniy,
David Baker,
R. Strong,
L. Stamatatos,
L. Stamatatos,
W. Schief
|
7 |
2010 |
7
🦁
|
|
🐜
|
Optimization of therapeutic antibodies by predicting antigen specificity from antibody sequence via deep learning
12 auth.
Derek M. Mason,
Simon Friedensohn,
Cédric R. Weber,
Christian Jordi,
Bastian Wagner,
Simon M Meng,
...
R. Ehling,
Lucia Bonati,
J. Dahinden,
P. Gainza,
B. Correia,
S. Reddy
|
7 |
2021 |
7
🐜
|
|
🐜
|
A Global Map of Lipid-Binding Proteins and Their Ligandability in Cells
11 auth.
M. Niphakis,
Kenneth M. Lum,
A. Cognetta,
B. Correia,
Taka-Aki Ichu,
J. Olucha,
...
Steven J Brown,
Soumajit Kundu,
F. Piscitelli,
H. Rosen,
B. Cravatt
|
7 |
2015 |
7
🐜
|
|
🐢
|
Structure-based drug design with equivariant diffusion models
12 auth.
Arne Schneuing,
Yuanqi Du,
Charles Harris,
Arian R. Jamasb,
Ilia Igashov,
Weitao Du,
...
T. Blundell,
Pietro Li'o,
Carla P. Gomes,
Max Welling,
Michael M. Bronstein,
B. Correia
|
7 |
2022 |
7
🐢
|
