|
π
|
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control consortium
161 auth.
Z. Su,
PaweΕ P. Εabaj,
Sheng Li,
J. Thierry-Mieg,
D. Thierry-Mieg,
Wei Shi,
Charles Wang,
G. Schroth,
R. Setterquist,
Johnf . Thompson,
W. Jones,
Wenzhong Xiao,
Weihong Xu,
R. Jensen,
Reagan J. Kelly,
...
Joshua Xu,
A. Conesa,
Cesare Furlanello,
Hanlin Gao,
H. Hong,
N. Jafari,
S. Letovsky,
Yang Liao,
Fei Lu,
E. Oakeley,
Zhiyu Peng,
C. Praul,
Javier Santoyo-Lopez,
A. Scherer,
Tieliu Shi,
G. Smyth,
F. Staedtler,
P. Sykacek,
Xinzhen Tan,
E. Thompson,
J. Vandesompele,
May D. Wang,
Jian Wang,
R. Wolfinger,
J. Zavadil,
S. Auerbach,
Wenjun Bao,
H. Binder,
Thomas M. Blomquist,
M. Brilliant,
P. Bushel,
Weimin Cai,
Jennifer G. Catalano,
Ching-Wei Chang,
Tao Chen,
Geng Chen,
Rong Chen,
M. Chierici,
T. Chu,
Djork-ArnΓ© Clevert,
Youping Deng,
A. Derti,
V. Devanarayan,
Z. Dong,
J. Dopazo,
T. Du,
H. Fang,
Yongxiang Fang,
M. Fasold,
Anita Fernandez,
M. Fischer,
Pedro FuriΓ³-TarΓ,
J. Fuscoe,
Florian Caimet,
S. Gaj,
J. Gandara,
Huan Gao,
W. Ge,
Y. Gondo,
Binsheng Gong,
Meihua Gong,
Zhuolin Gong,
B. Green,
Chao Guo,
Lei Guo,
Li Guo,
J. Hadfield,
J. Hellemans,
Sepp Hochreiter,
Meiwen Jia,
Min Jian,
Charles D. Johnson,
S. Kay,
J. Kleinjans,
S. Lababidi,
S. Levy,
Quan-Zhen Li,
Li Li,
Peng Li,
Yan Li,
Haiqing Li,
Jianying Li,
Shiyong Li,
Simon M Lin,
Francisco J. Lopez,
Xin-xin Lu,
Heng Luo,
Xiwen Ma,
J. Meehan,
D. Megherbi,
N. Mei,
Bing Mu,
B. Ning,
A. Pandey,
J. PΓ©rez-Florido,
R. Perkins,
R. Peters,
J. Phan,
M. Pirooznia,
F. Qian,
T. Qing,
L. Rainbow,
P. Rocca-Serra,
Laure Sambourg,
Susanna-Assunta Sansone,
S. Schwartz,
Ruchir R. Shah,
Jie Shen,
Todd M. Smith,
O. Stegle,
N. Stralis-Pavese,
E. Stupka,
Yutaka Suzuki,
Lee T. Szkotnicki,
M. Tinning,
Bimeng Tu,
J. V. Delft,
Alicia Vela-Boza,
E. Venturini,
S. Walker,
Liqing Wan,
Wei Wang,
Jinhui Wang,
Jun Wang,
E. Wieben,
J. Willey,
P. Wu,
J. Xuan,
Yong Yang,
Zhan Ye,
Ye Yin,
Ying Yu,
Yate-Ching Yuan,
John Zhang,
Kecheng Zhang,
Wenqian Zhang,
Wenwei Zhang,
Yanyan Zhang,
Chen Zhao,
Yuanting Zheng,
Yiming Zhou,
P. Zumbo,
W. Tong,
David P. Kreil,
C. Mason,
Leming Shi
|
9 |
2014 |
9
π
|
|
π
|
The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance
46 auth.
Charles Wang,
Binsheng Gong,
P. Bushel,
J. Thierry-Mieg,
D. Thierry-Mieg,
Joshua Xu,
H. Fang,
H. Hong,
Jie Shen,
Z. Su,
J. Meehan,
Xiaojin Li,
Lu Yang,
Haiqing Li,
PaweΕ P. Εabaj,
...
David P. Kreil,
D. Megherbi,
S. Gaj,
F. Caiment,
J. V. van Delft,
J. Kleinjans,
A. Scherer,
V. Devanarayan,
Jian Wang,
Yong Yang,
Hui-Rong Qian,
L. Lancashire,
M. Bessarabova,
Y. Nikolsky,
Cesare Furlanello,
M. Chierici,
D. Albanese,
Giuseppe Jurman,
S. Riccadonna,
M. Filosi,
R. Visintainer,
Ke Zhang,
Jianying Li,
J. Hsieh,
Daniel L. Svoboda,
J. Fuscoe,
Youping Deng,
Leming Shi,
R. Paules,
S. Auerbach,
W. Tong
|
8 |
2014 |
8
π
|
|
π
|
Comparison of RNA-seq and microarray-based models for clinical endpoint prediction
76 auth.
Wenqian Zhang,
Ying Yu,
F. Hertwig,
J. Thierry-Mieg,
Wenwei Zhang,
D. Thierry-Mieg,
Jian Wang,
Cesare Furlanello,
V. Devanarayan,
Jie Cheng,
Youping Deng,
B. Hero,
H. Hong,
Meiwen Jia,
Li Li,
...
Simon M Lin,
Y. Nikolsky,
A. Oberthuer,
T. Qing,
Z. Su,
R. Volland,
Charles Wang,
May D. Wang,
Junmei Ai,
D. Albanese,
S. Asgharzadeh,
S. Avigad,
Wenjun Bao,
M. Bessarabova,
M. Brilliant,
B. Brors,
M. Chierici,
T. Chu,
Jibin Zhang,
R. Grundy,
Min He,
S. Hebbring,
H. Kaufman,
S. Lababidi,
L. Lancashire,
Yan Li,
Xin-xin Lu,
Heng Luo,
Xiwen Ma,
B. Ning,
R. Noguera,
M. Peifer,
J. Phan,
F. Roels,
Carolina Rosswog,
Susan Shao,
Jie Shen,
J. TheiΓen,
G. Tonini,
J. Vandesompele,
P. Wu,
Wenzhong Xiao,
Joshua Xu,
Weihong Xu,
J. Xuan,
Yong Yang,
Zhan Ye,
Z. Dong,
Ke Zhang,
Ye Yin,
Chen Zhao,
Yuanting Zheng,
R. Wolfinger,
Tieliu Shi,
L. Malkas,
F. Berthold,
Jun Wang,
W. Tong,
Leming Shi,
Zhiyu Peng,
M. Fischer
|
8 |
2015 |
8
π
|
|
π
|
CERAPP: Collaborative Estrogen Receptor Activity Prediction Project
41 auth.
K. Mansouri,
A. Abdelaziz,
A. Rybacka,
A. Roncaglioni,
A. Tropsha,
A. Varnek,
A. Zakharov,
Andrew Paul Worth,
A. Richard,
C. Grulke,
D. Trisciuzzi,
D. Fourches,
D. Horvath,
E. Benfenati,
E. Muratov,
...
E. B. Wedebye,
F. Grisoni,
G. Mangiatordi,
G. M. Incisivo,
H. Hong,
H. Ng,
I. Tetko,
Ilya A. Balabin,
Jayaram Kancherla,
Jie Shen,
J. Burton,
M. Nicklaus,
M. Cassotti,
N. Nikolov,
O. Nicolotti,
P. Andersson,
Q. Zang,
R. Politi,
R. Beger,
R. Todeschini,
Ruili Huang,
S. Farag,
S. A. Rosenberg,
S. Slavov,
Xin Hu,
R. Judson
|
8 |
2016 |
8
π
|
|
π¦
|
EADB: an estrogenic activity database for assessing potential endocrine activity.
19 auth.
Jie Shen,
Lei Xu,
H. Fang,
A. Richard,
J. Bray,
R. Judson,
Guangxu Zhou,
T. Colatsky,
Jason L. Aungst,
C. Teng,
...
Stephen C. Harris,
W. Ge,
Susie Y. Dai,
Z. Su,
A. Jacobs,
W. Harrouk,
R. Perkins,
W. Tong,
H. Hong
|
6 |
2013 |
6
π¦
|
|
π¦
|
Homology modeling, molecular docking, and molecular dynamics simulations elucidated Ξ±-fetoprotein binding modes
Jie Shen,
Wenqian Zhang,
H. Fang,
R. Perkins,
W. Tong,
H. Hong
|
5 |
2013 |
5
π¦
|
|
π
|
Critical role of bioinformatics in translating huge amounts of next-generation sequencing data into personalized medicine
9 auth.
H. Hong,
Wenqian Zhang,
Jie Shen,
Z. Su,
B. Ning,
Tao Han,
...
R. Perkins,
Leming Shi,
W. Tong
|
5 |
2013 |
5
π
|
|
π
|
Rat Ξ±-Fetoprotein binding affinities of a large set of structurally diverse chemicals elucidated the relationships between structures and binding affinities.
9 auth.
H. Hong,
W. Branham,
S. Dial,
C. Moland,
H. Fang,
Jie Shen,
...
R. Perkins,
D. Sheehan,
W. Tong
|
4 |
2012 |
4
π
|
|
π
|
ehp CERAPP : Collaborative Estrogen Receptor Activity Prediction Project
41 auth.
K. Mansouri,
A. Abdelaziz,
A. Rybacka,
A. Roncaglioni,
A. Tropsha,
A. Varnek,
A. Zakharov,
Andrew Paul Worth,
A. Richard,
C. Grulke,
D. Trisciuzzi,
D. Fourches,
D. Horvath,
E. Benfenati,
E. Muratov,
...
E. B. Wedebye,
F. Grisoni,
G. Mangiatordi,
G. M. Incisivo,
H. Hong,
H. Ng,
I. Tetko,
Ilya A. Balabin,
Jayaram Kancherla,
Jie Shen,
J. Burton,
M. Nicklaus,
M. Cassotti,
N. Nikolov,
O. Nicolotti,
P. Andersson,
Q. Zang,
R. Politi,
R. Beger,
R. Todeschini,
Ruili Huang,
S. Farag,
S. A. Rosenberg,
S. Slavov,
Xin Hu,
R. Judson
|
4 |
2016 |
4
π
|
|
π
|
A Rat Ξ±-Fetoprotein Binding Activity Prediction Model to Facilitate Assessment of the Endocrine Disruption Potential of Environmental Chemicals
9 auth.
H. Hong,
Jie Shen,
H. Ng,
S. Sakkiah,
Hao Ye,
W. Ge,
...
P. Gong,
Wenming Xiao,
W. Tong
|
4 |
2016 |
4
π
|
|
π
|
Pitfall of genome-wide association studies: Sources of inconsistency in genotypes and their effects
10 auth.
H. Hong,
Lei Xu,
Z. Su,
Jie Liu,
W. Ge,
Jie Shen,
...
H. Fang,
R. Perkins,
Leming Shi,
W. Tong
|
3 |
2012 |
3
π
|
