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🐬
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Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons
Kate D. Meyer,
Yogesh Saletore,
P. Zumbo,
O. Elemento,
C. Mason,
S. Jaffrey
|
11 |
2012 |
11
🐬
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|
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A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control consortium
161 auth.
Z. Su,
Paweł P. Łabaj,
Sheng Li,
J. Thierry-Mieg,
D. Thierry-Mieg,
Wei Shi,
Charles Wang,
G. Schroth,
R. Setterquist,
Johnf . Thompson,
W. Jones,
Wenzhong Xiao,
Weihong Xu,
R. Jensen,
Reagan J. Kelly,
...
Joshua Xu,
A. Conesa,
Cesare Furlanello,
Hanlin Gao,
H. Hong,
N. Jafari,
S. Letovsky,
Yang Liao,
Fei Lu,
E. Oakeley,
Zhiyu Peng,
C. Praul,
Javier Santoyo-Lopez,
A. Scherer,
Tieliu Shi,
G. Smyth,
F. Staedtler,
P. Sykacek,
Xinzhen Tan,
E. Thompson,
J. Vandesompele,
May D. Wang,
Jian Wang,
R. Wolfinger,
J. Zavadil,
S. Auerbach,
Wenjun Bao,
H. Binder,
Thomas M. Blomquist,
M. Brilliant,
P. Bushel,
Weimin Cai,
Jennifer G. Catalano,
Ching-Wei Chang,
Tao Chen,
Geng Chen,
Rong Chen,
M. Chierici,
T. Chu,
Djork-Arné Clevert,
Youping Deng,
A. Derti,
V. Devanarayan,
Z. Dong,
J. Dopazo,
T. Du,
H. Fang,
Yongxiang Fang,
M. Fasold,
Anita Fernandez,
M. Fischer,
Pedro Furió-Tarí,
J. Fuscoe,
Florian Caimet,
S. Gaj,
J. Gandara,
Huan Gao,
W. Ge,
Y. Gondo,
Binsheng Gong,
Meihua Gong,
Zhuolin Gong,
B. Green,
Chao Guo,
Lei Guo,
Li Guo,
J. Hadfield,
J. Hellemans,
Sepp Hochreiter,
Meiwen Jia,
Min Jian,
Charles D. Johnson,
S. Kay,
J. Kleinjans,
S. Lababidi,
S. Levy,
Quan-Zhen Li,
Li Li,
Peng Li,
Yan Li,
Haiqing Li,
Jianying Li,
Shiyong Li,
Simon M Lin,
Francisco J. Lopez,
Xin-xin Lu,
Heng Luo,
Xiwen Ma,
J. Meehan,
D. Megherbi,
N. Mei,
Bing Mu,
B. Ning,
A. Pandey,
J. Pérez-Florido,
R. Perkins,
R. Peters,
J. Phan,
M. Pirooznia,
F. Qian,
T. Qing,
L. Rainbow,
P. Rocca-Serra,
Laure Sambourg,
Susanna-Assunta Sansone,
S. Schwartz,
Ruchir R. Shah,
Jie Shen,
Todd M. Smith,
O. Stegle,
N. Stralis-Pavese,
E. Stupka,
Yutaka Suzuki,
Lee T. Szkotnicki,
M. Tinning,
Bimeng Tu,
J. V. Delft,
Alicia Vela-Boza,
E. Venturini,
S. Walker,
Liqing Wan,
Wei Wang,
Jinhui Wang,
Jun Wang,
E. Wieben,
J. Willey,
P. Wu,
J. Xuan,
Yong Yang,
Zhan Ye,
Ye Yin,
Ying Yu,
Yate-Ching Yuan,
John Zhang,
Kecheng Zhang,
Wenqian Zhang,
Wenwei Zhang,
Yanyan Zhang,
Chen Zhao,
Yuanting Zheng,
Yiming Zhou,
P. Zumbo,
W. Tong,
David P. Kreil,
C. Mason,
Leming Shi
|
9 |
2014 |
9
🐜
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🐜
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TOX is a critical regulator of tumour-specific T cell differentiation
27 auth.
A. Scott,
F. Dündar,
P. Zumbo,
Smita S Chandran,
C. Klebanoff,
M. Shakiba,
Prerak M. Trivedi,
Laura Menocal,
H. Appleby,
Steven Camara,
D. Zamarin,
T. Walther,
A. Snyder,
Matthew R Femia,
E. Comen,
...
H. Wen,
M. Hellmann,
N. Anandasabapathy,
Yong Liu,
N. Altorki,
P. Lauer,
Olivier Levy,
M. Glickman,
J. Kaye,
D. Betel,
M. Philip,
A. Schietinger
|
9 |
2019 |
9
🐜
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🐜
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Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data
9 auth.
Franck Rapaport,
R. Khanin,
Yupu Liang,
Mono Pirun,
A. Krek,
P. Zumbo,
...
C. Mason,
N. Socci,
D. Betel
|
9 |
2013 |
9
🐜
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|
🐜
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An optimized algorithm for detecting and annotating regional differential methylation
11 auth.
Sheng Li,
Francine E. Garrett-Bakelman,
Altuna Akalin,
P. Zumbo,
Ross Levine,
Bik L. To,
...
Ian D. Lewis,
Anna L Brown,
Richard J J D'Andrea,
Ari Melnick,
Christopher E. Mason
|
8 |
2013 |
8
🐜
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|
🐜
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Relapse specific mutations in NT5C2 in childhood acute lymphoblastic leukemia
18 auth.
Julia A. Meyer,
Jinhua Wang,
L. Hogan,
Jun J. Yang,
Smita Dandekar,
Jay P. Patel,
Zuojian Tang,
P. Zumbo,
Sheng Li,
J. Zavadil,
...
R. Levine,
T. Cardozo,
S. Hunger,
E. Raetz,
W. Evans,
Debra J. Morrison,
C. Mason,
W. Carroll
|
8 |
2013 |
8
🐜
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|
🐜
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Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics
46 auth.
Ebrahim Afshinnekoo,
Cem Meydan,
Shanin Chowdhury,
D. Jaroudi,
Collin Boyer,
Nick Bernstein,
Julia M. Maritz,
D. Reeves,
J. Gandara,
S. Chhangawala,
Sofia Ahsanuddin,
Amber Simmons,
T. Nessel,
Bharathi Sundaresh,
Elizabeth Pereira,
...
Ellen Jorgensen,
S. Kolokotronis,
Nell Kirchberger,
Isaac Garcia,
D. Gandara,
S. Dhanraj,
Tanzina Nawrin,
Yogesh Saletore,
Noah Alexander,
P. Vijay,
Elizabeth Hénaff,
P. Zumbo,
Michael Walsh,
G. O'Mullan,
S. Tighe,
J. Dudley,
A. Dunaif,
S. Ennis,
Eoghan O’Halloran,
T. Magalhães,
B. Boone,
Angela L. Jones,
T. Muth,
Katie Schneider Paolantonio,
Elizabeth Alter,
E. Schadt,
J. Garbarino,
Robert J. Prill,
J. Carlton,
S. Levy,
C. Mason
|
8 |
2015 |
8
🐜
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🐜
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Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study
29 auth.
Sheng Li,
S. Tighe,
C. Nicolet,
D. Grove,
S. Levy,
W. Farmerie,
A. Viale,
C. Wright,
P. Schweitzer,
Yuan Gao,
Dewey Kim,
J. Boland,
B. Hicks,
Ryan Kim,
S. Chhangawala,
...
N. Jafari,
N. Raghavachari,
J. Gandara,
N. Garcia-Reyero,
C. Hendrickson,
D. Roberson,
J. Rosenfeld,
Todd M. Smith,
J. Underwood,
May D. Wang,
P. Zumbo,
D. Baldwin,
G. Grills,
C. Mason
|
7 |
2014 |
7
🐜
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|
🐜
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Adaptable haemodynamic endothelial cells for organogenesis and tumorigenesis
29 auth.
Brisa Palikuqi,
Duc-Huy T. Nguyen,
Ge Li,
Ryan Schreiner,
A. Pellegata,
Y. Liu,
D. Redmond,
F. Geng,
Yang Lin,
J. Gómez-Salinero,
Masataka Yokoyama,
P. Zumbo,
Tuo Zhang,
Balvir Kunar,
Mavee Witherspoon,
...
Teng Han,
A. Tedeschi,
F. Scottoni,
S. Lipkin,
L. Dow,
O. Elemento,
J. Xiang,
K. Shido,
J. Spence,
Qiao Zhou,
R. Schwartz,
P. de Coppi,
S. Rabbany,
S. Rafii
|
7 |
2020 |
7
🐜
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🐜
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Detecting and correcting systematic variation in large-scale RNA sequencing data
14 auth.
Sheng Li,
Paweł P. Łabaj,
P. Zumbo,
P. Sykacek,
Wei Shi,
Leming Shi,
J. Phan,
P. Wu,
May D. Wang,
Charles Wang,
...
D. Thierry-Mieg,
J. Thierry-Mieg,
David P. Kreil,
C. Mason
|
7 |
2014 |
7
🐜
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🐜
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A hybrid mechanism of action for BCL6 in B cells defined by formation of functionally distinct complexes at enhancers and promoters.
20 auth.
K. Hatzi,
Yanwen Jiang,
Chuanxin Huang,
Francine E. Garrett-Bakelman,
Micah D. Gearhart,
Eugenia G. Giannopoulou,
P. Zumbo,
K. Kirouac,
Srividya Bhaskara,
J. Polo,
...
Matthias Kormaksson,
Alexander D. MacKerell,
F. Xue,
C. Mason,
S. Hiebert,
G. Privé,
L. Cerchietti,
V. Bardwell,
O. Elemento,
A. Melnick
|
7 |
2013 |
7
🐜
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🐜
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Fully defined human pluripotent stem cell-derived microglia and tri-culture system model C3 production in Alzheimer’s disease
15 auth.
Sudha R. Guttikonda,
L. Sikkema,
J. Tchieu,
Nathalie Saurat,
R. Walsh,
O. Harschnitz,
G. Ciceri,
M. Sneeboer,
L. Mazutis,
M. Setty,
...
P. Zumbo,
D. Betel,
L. D. de Witte,
D. Pe’er,
L. Studer
|
7 |
2021 |
7
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