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🐜
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Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
58 auth.
J. Lloyd-Price,
Cesar Arze,
A. Ananthakrishnan,
M. Schirmer,
J. Ávila-Pacheco,
Tiffany W. Poon,
E. Andrews,
N. Ajami,
K. Bonham,
Colin J. Brislawn,
D. Casero,
Holly Courtney,
Antonio Gonzalez,
T. Graeber,
A. B. Hall,
...
K. Lake,
C. Landers,
Himel Mallick, PhD, FASA,
D. Plichta,
M. Prasad,
Gholamali Rahnavard,
J. Sauk,
D. Shungin,
Y. Vázquez-Baeza,
R. White,
Jason Kevin Amy Courtney Jess L. Hamed Lauren J. Christo Bishai Bullock Deik Dennis Kaplan Khalili McIver M,
J. Bishai,
Kevin Bullock,
A. Deik,
C. Dennis,
Jess L. Kaplan,
H. Khalili,
L. McIver,
C. Moran,
L. Nguyen,
K. Pierce,
Randall Schwager,
Alexandra Sirota-Madi,
B. Stevens,
W. Tan,
J. ten Hoeve,
G. Weingart,
R. Wilson,
V. Yajnik,
J. Braun,
L. Denson,
J. Jansson,
R. Knight,
S. Kugathasan,
D. McGovern,
J. Petrosino,
T. Stappenbeck,
H. Winter,
C. Clish,
E. Franzosa,
H. Vlamakis,
R. Xavier,
C. Huttenhower
|
10 |
2019 |
10
🐜
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|
🐜
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Human gut microbes impact host serum metabolome and insulin sensitivity
34 auth.
H. Pedersen,
Valborg Gudmundsdottir,
H. Nielsen,
Tuulia Hyotylainen,
T. Nielsen,
B. Jensen,
K. Forslund,
F. Hildebrand,
Edi Prifti,
G. Falony,
E. Chatelier,
F. Levenez,
J. Doré,
I. Mattila,
D. Plichta,
...
Päivi Pöhö,
L. Hellgren,
Manimozhiyan Arumugam,
S. Sunagawa,
S. Vieira-Silva,
T. Jørgensen,
J. Holm,
K. Trošt,
MetaHIT consortium,
K. Kristiansen,
S. Brix,
J. Raes,
Jun Wang,
T. Hansen,
P. Bork,
S. Brunak,
M. Orešič,
S. Ehrlich,
O. Pedersen
|
10 |
2016 |
10
🐜
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|
🐜
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Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
98 auth.
H. B. Nielsen,
Mathieu Almeida,
A. S. Juncker,
Simon Rasmussen,
Junhua Li,
S. Sunagawa,
D. Plichta,
Laurent Gautier,
Anders G Pedersen,
E. Le Chatelier,
Eric Pelletier,
Ida Bonde,
Trine Nielsen,
C. Manichanh,
Manimozhiyan Arumugam,
...
Jean-Michel Batto,
Marcelo B Quintanilha dos Santos,
Nikolaj S. Blom,
N. Borruel,
K. Burgdorf,
F. Boumezbeur,
Francesc Casellas,
J. Doré,
Piotr Dworzynski,
F. Guarner,
T. Hansen,
F. Hildebrand,
R. Kaas,
Sean Kennedy,
Karsten Kristiansen,
Jens Roat Kultima,
Pierre Leonard,
F. Levenez,
Ole Lund,
Bouziane Moumen,
Denis Le Paslier,
N. Pons,
Oluf Pedersen,
Edi Prifti,
Junjie Qin,
Jeroen Raes,
Søren J Sørensen,
Julien Tap,
S. Tims,
D. Ussery,
Takuji Yamada,
A. S. Juncker,
Manimozhiyan Arumugam,
Karsten Kristiansen,
Pierre Leonard,
P. Renault,
Thomas Sicheritz-Pontén,
Peer Bork,
Jun Wang,
S. Brunak,
S. D. Ehrlich,
A. Jamet,
Alexandre Mérieux,
Antonella Cultrone,
A. Torrejon,
Benoît Quinquis,
Christian Bréchot,
C. Delorme,
Christine M'Rini,
Willem M. de Vos,
Emmanuelle Maguin,
E. Varela,
É. Guédon,
Falony Gwen,
Florence Haimet,
F. Artiguenave,
Gaetana Vandemeulebrouck,
G. Denariaz,
Ghalia Khaci,
H. Blottière,
Jan Knol,
Jean Weissenbach,
J. V. H. van Hylckama Vlieg,
J. Torben,
Julian Parkhill,
K. Turner,
M. van de Guchte,
M. Antolín,
Maria Rescigno,
M. Kleerebezem,
M. Derrien,
N. Galleron,
Nicolas Sanchez,
N. Grarup,
P. Veiga,
R. Oozeer,
R. Dervyn,
Séverine Layec,
T. Bruls,
Yohanan Winogradski,
Zoetendal Erwin G,
S. Brunak,
S. D. Ehrlich
|
9 |
2014 |
9
🐜
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|
🐜
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A defined commensal consortium elicits CD8 T cells and anti-cancer immunity
28 auth.
Takeshi Tanoue,
S. Morita,
D. Plichta,
Ashwin N. Skelly,
W. Suda,
Y. Sugiura,
S. Narushima,
H. Vlamakis,
I. Motoo,
K. Sugita,
A. Shiota,
Kozue Takeshita,
K. Yasuma-Mitobe,
D. Riethmacher,
T. Kaisho,
...
J. Norman,
D. Mucida,
M. Suematsu,
T. Yaguchi,
V. Bucci,
Takashi Inoue,
Y. Kawakami,
B. Ollé,
Bruce Roberts,
M. Hattori,
R. Xavier,
K. Atarashi,
K. Honda
|
9 |
2019 |
9
🐜
|
|
🐜
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Akkermansia muciniphila induces intestinal adaptive immune responses during homeostasis
11 auth.
Eduard Ansaldo,
Leianna C Slayden,
Krystal L. Ching,
M. Koch,
Natalie Wolf,
D. Plichta,
...
Eric Michael Brown,
D. Graham,
R. Xavier,
J. Moon,
G. Barton
|
8 |
2019 |
8
🐜
|
|
🐜
|
Novel bile acid biosynthetic pathways are enriched in the microbiome of centenarians
35 auth.
Y. Sato,
K. Atarashi,
D. Plichta,
Y. Arai,
Satoshi Sasajima,
Sean M. Kearney,
W. Suda,
Kozue Takeshita,
Takahiro Sasaki,
Shoki Okamoto,
Ashwin N. Skelly,
Yuki Okamura,
H. Vlamakis,
Youxian Li,
Takeshi Tanoue,
...
H. Takei,
H. Nittono,
S. Narushima,
J. Irie,
H. Itoh,
K. Moriya,
Y. Sugiura,
M. Suematsu,
Nobuko Moritoki,
S. Shibata,
D. Littman,
M. Fischbach,
Y. Uwamino,
Takashi Inoue,
A. Honda,
M. Hattori,
T. Murai,
R. Xavier,
N. Hirose,
K. Honda
|
8 |
2021 |
8
🐜
|
|
🐜
|
Host genetics and the rumen microbiome jointly associate with methane emissions in dairy cows
12 auth.
G. Difford,
D. Plichta,
P. Løvendahl,
J. Lassen,
S. Noel,
O. Højberg,
...
A. Wright,
Zhigang Zhu,
L. Kristensen,
H. Nielsen,
B. Guldbrandtsen,
G. Sahana
|
7 |
2018 |
7
🐜
|
|
🐜
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Cholesterol Metabolism by Uncultured Human Gut Bacteria Influences Host Cholesterol Level
17 auth.
Douglas J. Kenny,
Douglas J. Kenny,
D. Plichta,
D. Shungin,
D. Shungin,
N. Koppel,
A. B. Hall,
B. Fu,
R. Vasan,
S. Shaw,
...
S. Shaw,
H. Vlamakis,
H. Vlamakis,
E. Balskus,
R. Xavier,
R. Xavier,
R. Xavier
|
7 |
2020 |
7
🐜
|
|
🦁
|
Therapeutic Opportunities in Inflammatory Bowel Disease: Mechanistic Dissection of Host-Microbiome Relationships
D. Plichta,
D. Graham,
Sathish Subramanian,
R. Xavier
|
7 |
2019 |
7
🦁
|
|
🐜
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Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life
28 auth.
T. Vatanen,
D. Plichta,
J. Somani,
Philipp C. Münch,
Timothy D. Arthur,
A. B. Hall,
Sabine Rudolf,
E. Oakeley,
Xiaobo Ke,
R. A. Young,
Henry J. Haiser,
R. Kolde,
M. Yassour,
Kristiina Luopajärvi,
Heli Siljander,
...
S. Virtanen,
J. Ilonen,
R. Uibo,
V. Tillmann,
Sergei Mokurov,
N. Dorshakova,
Jeffrey A. Porter,
A. Mchardy,
H. Lähdesmäki,
H. Vlamakis,
C. Huttenhower,
M. Knip,
R. Xavier
|
7 |
2018 |
7
🐜
|
|
🐜
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Multi-omics reveal microbial determinants impacting responses to biologic therapies in inflammatory bowel disease.
12 auth.
J. Lee,
D. Plichta,
L. Hogstrom,
N. Borren,
Helena Lau,
Sara M. Gregory,
...
W. Tan,
H. Khalili,
C. Clish,
H. Vlamakis,
R. Xavier,
A. Ananthakrishnan
|
7 |
2021 |
7
🐜
|
|
🐜
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Invertible promoters mediate bacterial phase variation, antibiotic resistance, and host adaptation in the gut
12 auth.
Xiaofang Jiang,
A. B. Hall,
Timothy D. Arthur,
D. Plichta,
Christian Covington,
M. Poyet,
...
Jessica W. Crothers,
P. Moses,
Andrew C. Tolonen,
H. Vlamakis,
E. Alm,
R. Xavier
|
6 |
2019 |
6
🐜
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