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Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
58 auth.
J. Lloyd-Price,
Cesar Arze,
A. Ananthakrishnan,
M. Schirmer,
J. Ávila-Pacheco,
Tiffany W. Poon,
E. Andrews,
N. Ajami,
K. Bonham,
Colin J. Brislawn,
D. Casero,
Holly Courtney,
Antonio Gonzalez,
T. Graeber,
A. B. Hall,
...
K. Lake,
C. Landers,
Himel Mallick, PhD, FASA,
D. Plichta,
M. Prasad,
Gholamali Rahnavard,
J. Sauk,
D. Shungin,
Y. Vázquez-Baeza,
R. White,
Jason Kevin Amy Courtney Jess L. Hamed Lauren J. Christo Bishai Bullock Deik Dennis Kaplan Khalili McIver M,
J. Bishai,
Kevin Bullock,
A. Deik,
C. Dennis,
Jess L. Kaplan,
H. Khalili,
L. McIver,
C. Moran,
L. Nguyen,
K. Pierce,
Randall Schwager,
Alexandra Sirota-Madi,
B. Stevens,
W. Tan,
J. ten Hoeve,
G. Weingart,
R. Wilson,
V. Yajnik,
J. Braun,
L. Denson,
J. Jansson,
R. Knight,
S. Kugathasan,
D. McGovern,
J. Petrosino,
T. Stappenbeck,
H. Winter,
C. Clish,
E. Franzosa,
H. Vlamakis,
R. Xavier,
C. Huttenhower
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10 |
2019 |
10
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MetaPhlAn2 for enhanced metagenomic taxonomic profiling
9 auth.
Duy Tin Truong,
E. Franzosa,
Timothy L. Tickle,
Matthias Scholz,
G. Weingart,
Edoardo Pasolli,
...
Adrian Tett,
C. Huttenhower,
N. Segata
|
10 |
2015 |
10
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🦁
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Gut microbiome structure and metabolic activity in inflammatory bowel disease
27 auth.
E. Franzosa,
Alexandra Sirota-Madi,
J. Ávila-Pacheco,
Nadine Fornelos,
Henry J. Haiser,
S. Reinker,
T. Vatanen,
A. B. Hall,
Himel Mallick, PhD, FASA,
L. McIver,
J. Sauk,
R. Wilson,
B. Stevens,
Justin Scott,
K. Pierce,
...
A. Deik,
Kevin Bullock,
F. Imhann,
Jeffrey A. Porter,
A. Zhernakova,
Jingyuan Fu,
R. Weersma,
C. Wijmenga,
C. Clish,
H. Vlamakis,
C. Huttenhower,
R. Xavier
|
10 |
2018 |
10
🦁
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🐜
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Multivariable association discovery in population-scale meta-omics studies
20 auth.
Himel Mallick, PhD, FASA,
A. Rahnavard,
L. McIver,
Siyuan Ma,
Yancong Zhang,
L. Nguyen,
Timothy L. Tickle,
G. Weingart,
Boyu Ren,
Emma H. Schwager,
...
Suvo Chatterjee,
Kelsey N. Thompson,
J. Wilkinson,
Ayshwarya Subramanian,
Yiren Lu,
L. Waldron,
J. Paulson,
E. Franzosa,
H. C. Bravo,
C. Huttenhower
|
10 |
2021 |
10
🐜
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🦁
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Species-level functional profiling of metagenomes and metatranscriptomes
11 auth.
E. Franzosa,
L. McIver,
Gholamali Rahnavard,
Luke R. Thompson,
M. Schirmer,
G. Weingart,
...
Karen Schwarzberg Lipson,
R. Knight,
J. Caporaso,
N. Segata,
C. Huttenhower
|
10 |
2018 |
10
🦁
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Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
16 auth.
F. Beghini,
L. McIver,
A. Blanco-Míguez,
Léonard Dubois,
F. Asnicar,
Sagun Maharjan,
A. Mailyan,
A. M. Thomas,
P. Manghi,
M. Valles-Colomer,
...
G. Weingart,
Yancong Zhang,
Moreno Zolfo,
C. Huttenhower,
E. Franzosa,
N. Segata
|
10 |
2020 |
10
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Strains, functions and dynamics in the expanded Human Microbiome Project
15 auth.
J. Lloyd-Price,
A. Mahurkar,
Gholamali Rahnavard,
J. Crabtree,
Joshua Orvis,
Brantley Hall,
Arthur Brady,
H. Creasy,
Carrie McCracken,
M. Giglio,
...
Daniel McDonald,
E. Franzosa,
R. Knight,
O. White,
C. Huttenhower
|
9 |
2017 |
9
🐜
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The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes.
22 auth.
A. Kostic,
D. Gevers,
Heli Siljander,
T. Vatanen,
T. Hyötyläinen,
A. Hämäläinen,
A. Peet,
V. Tillmann,
Päivi Pöhö,
I. Mattila,
...
H. Lähdesmäki,
E. Franzosa,
O. Vaarala,
M. D. de Goffau,
H. Harmsen,
J. Ilonen,
S. Virtanen,
C. Clish,
M. Orešič,
C. Huttenhower,
M. Knip,
R. Xavier
|
9 |
2015 |
9
🐜
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🐜
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Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity
18 auth.
M. Schirmer,
S. Smeekens,
H. Vlamakis,
M. Jaeger,
M. Oosting,
E. Franzosa,
R. Horst,
Trees Jansen,
L. Jacobs,
M. Bonder,
...
A. Kurilshikov,
Jingyuan Fu,
L. Joosten,
A. Zhernakova,
C. Huttenhower,
C. Wijmenga,
M. Netea,
R. Xavier
|
9 |
2016 |
9
🐜
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🐜
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Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability
13 auth.
M. Yassour,
T. Vatanen,
Heli Siljander,
A. Hämäläinen,
T. Härkönen,
S. Ryhänen,
E. Franzosa,
H. Vlamakis,
C. Huttenhower,
D. Gevers,
...
E. Lander,
M. Knip,
R. Xavier
|
9 |
2015 |
9
🐜
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🐜
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Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans
25 auth.
T. Vatanen,
A. Kostic,
Eva d’Hennezel,
Heli Siljander,
E. Franzosa,
M. Yassour,
R. Kolde,
H. Vlamakis,
Timothy D. Arthur,
A. Hämäläinen,
A. Peet,
V. Tillmann,
R. Uibo,
Sergei Mokurov,
N. Dorshakova,
...
J. Ilonen,
S. Virtanen,
S. Szabo,
Jeffrey A. Porter,
H. Lähdesmäki,
C. Huttenhower,
D. Gevers,
T. W. Cullen,
M. Knip,
R. Xavier
|
9 |
2016 |
9
🐜
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The human gut microbiome in early-onset type 1 diabetes from the TEDDY study
22 auth.
T. Vatanen,
E. Franzosa,
Randall Schwager,
Surya Tripathi,
Timothy D. Arthur,
Kendra Vehik,
Å. Lernmark,
W. Hagopian,
M. Rewers,
J. She,
...
J. Toppari,
A. Ziegler,
B. Akolkar,
J. Krischer,
C. Stewart,
N. Ajami,
J. Petrosino,
D. Gevers,
H. Lähdesmäki,
H. Vlamakis,
C. Huttenhower,
R. Xavier
|
9 |
2018 |
9
🐜
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🐜
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Indoleacrylic Acid Produced by Commensal Peptostreptococcus Species Suppresses Inflammation.
22 auth.
M. Wlodarska,
Chengwei Luo,
R. Kolde,
Eva d’Hennezel,
J. W. Annand,
Cortney E. Heim,
P. Krastel,
E. Schmitt,
Abdifatah S Omar,
E. Creasey,
...
Ashley Garner,
Sina Mohammadi,
Daniel J. O'Connell,
Sahar Abubucker,
Timothy D. Arthur,
E. Franzosa,
C. Huttenhower,
Leon O. Murphy,
Henry J. Haiser,
H. Vlamakis,
Jeffrey A. Porter,
R. Xavier
|
9 |
2017 |
9
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