|
🐜
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
112 auth.
Evan Bolyen,
J. Rideout,
Matthew R. Dillon,
N. Bokulich,
C. Abnet,
Gabriel A. Al-Ghalith,
Harriet Alexander,
E. Alm,
Manimozhiyan Arumugam,
F. Asnicar,
Yang Bai,
J. Bisanz,
K. Bittinger,
A. Brejnrod,
Colin J. Brislawn,
...
C. T. Brown,
B. Callahan,
A. Caraballo-Rodríguez,
John H. Chase,
Emily K. Cope,
R. D. da Silva,
C. Diener,
P. Dorrestein,
G. Douglas,
D. Durall,
C. Duvallet,
C. Edwardson,
Madeleine Ernst,
M. Estaki,
Jennifer T. Fouquier,
J. Gauglitz,
S. Gibbons,
D. Gibson,
Antonio Gonzalez,
Kestrel Gorlick,
Jiarong Guo,
Benjamin M Hillmann,
S. Holmes,
H. Holste,
C. Huttenhower,
G. Huttley,
Stefan Janssen,
A. Jarmusch,
Lingjing Jiang,
Benjamin D. Kaehler,
K. Kang,
Christopher R. Keefe,
P. Keim,
S. Kelley,
D. Knights,
I. Koester,
T. Kosciólek,
Jorden Kreps,
M. Langille,
Joslynn S. Lee,
R. Ley,
Yong-xin Liu,
E. Loftfield,
C. Lozupone,
Massoud Maher,
C. Marotz,
Bryan D. Martin,
Daniel McDonald,
L. McIver,
A. Melnik,
J. Metcalf,
S. C. Morgan,
James T. Morton,
Ahmad Turan Naimey,
Jose A Navas-Molina,
Louis-Félix Nothias,
Stephanie B. Orchanian,
Talima R. Pearson,
Samuel L. Peoples,
D. Petráš,
M. Preuss,
E. Pruesse,
Lasse Buur Rasmussen,
A. Rivers,
M. Robeson,
P. Rosenthal,
N. Segata,
Michael Shaffer,
A. Shiffer,
R. Sinha,
Se Jin Song,
J. Spear,
Austin D. Swafford,
Luke R. Thompson,
P. Torres,
Pauline Trinh,
A. Tripathi,
P. Turnbaugh,
Sabah Ul-Hasan,
J. V. D. van der Hooft,
Fernando Vargas,
Y. Vázquez-Baeza,
E. Vogtmann,
Max von Hippel,
William Walters,
Yunhu Wan,
Mingxun Wang,
Jonathan Warren,
Kyle C. Weber,
C. H. Williamson,
A. Willis,
Z. Xu,
Jesse R. Zaneveld,
Yilong Zhang,
Qiyun Zhu,
R. Knight,
J. Caporaso
|
13 |
2019 |
13
🐜
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🐜
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Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
11 auth.
Amnon Amir,
Daniel McDonald,
Jose A Navas-Molina,
Evguenia Kopylova,
James T. Morton,
Zhenjiang Zech Xu,
...
E. Kightley,
Luke R. Thompson,
Embriette R. Hyde,
Antonio Gonzalez,
R. Knight
|
10 |
2017 |
10
🐜
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🐜
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LSU LSU A communal catalogue reveals Earth's multiscale microbial A communal catalogue reveals Earth's multiscale microbial diversity diversity
42 auth.
Luke R. Thompson,
J. Sanders,
Daniel McDonald,
Amnon Amir,
J. Ladau,
K. Locey,
R. Prill,
A. Tripathi,
S. Gibbons,
Gail L Ackermann,
Jose A Navas-Molina,
Stefan Janssen,
Evguenia Kopylova,
Y. Vázquez-Baeza,
Antonio Gonzalez,
...
James T. Morton,
S. Mirarab,
Z. Xu,
Lingjing Jiang,
M. Haroon,
Jad N Kanbar,
Qiyun Zhu,
Se Jin Song,
T. Kosciólek,
N. Bokulich,
J. Lefler,
Colin J. Brislawn,
G. Humphrey,
S. Owens,
Jarrad Hampton-Marcell,
Donna berg-Lyons,
V. McKenzie,
N. Fierer,
J. Fuhrman,
A. Clauset,
L. Stevens,
A. Shade,
K. Pollard,
K. Goodwin,
J. Jansson,
J. Gilbert,
R. Knight
|
10 |
2021 |
10
🐜
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|
🐜
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QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
120 auth.
Evan Bolyen,
J. Rideout,
Matthew R. Dillon,
N. Bokulich,
C. Abnet,
Gabriel A. Al-Ghalith,
Harriet Alexander,
Harriet Alexander,
E. Alm,
Manimozhiyan Arumugam,
F. Asnicar,
Yang Bai,
J. Bisanz,
K. Bittinger,
A. Brejnrod,
...
Colin J. Brislawn,
C. T. Brown,
B. Callahan,
A. Caraballo-Rodríguez,
John H. Chase,
Emily K. Cope,
R. R. Silva,
P. Dorrestein,
G. Douglas,
D. Durall,
C. Duvallet,
C. Edwardson,
Madeleine Ernst,
M. Estaki,
Jennifer T. Fouquier,
J. Gauglitz,
D. Gibson,
Antonio Gonzalez,
Kestrel Gorlick,
Jiarong Guo,
Benjamin M Hillmann,
S. Holmes,
H. Holste,
C. Huttenhower,
C. Huttenhower,
G. Huttley,
Stefan Janssen,
A. Jarmusch,
Lingjing Jiang,
Benjamin D. Kaehler,
K. Kang,
K. Kang,
Christopher R. Keefe,
P. Keim,
S. Kelley,
D. Knights,
I. Koester,
I. Koester,
T. Kosciólek,
Jorden Kreps,
M. Langille,
Joslynn S. Lee,
R. Ley,
R. Ley,
Yong-xin Liu,
E. Loftfield,
C. Lozupone,
Massoud Maher,
C. Marotz,
Bryan D. Martin,
Daniel McDonald,
L. McIver,
L. McIver,
A. Melnik,
J. Metcalf,
S. C. Morgan,
James T. Morton,
Ahmad Turan Naimey,
Jose A Navas-Molina,
Jose A Navas-Molina,
Louis-Félix Nothias,
Stephanie B. Orchanian,
Talima R. Pearson,
Samuel L. Peoples,
Samuel L. Peoples,
D. Petráš,
M. Preuss,
E. Pruesse,
Lasse Buur Rasmussen,
A. Rivers,
Ii Michael S Robeson,
P. Rosenthal,
N. Segata,
Michael Shaffer,
A. Shiffer,
R. Sinha,
Se Jin Song,
J. Spear,
Austin D. Swafford,
Luke R. Thompson,
Luke R. Thompson,
P. Torres,
Pauline Trinh,
A. Tripathi,
A. Tripathi,
P. Turnbaugh,
Sabah Ul-Hasan,
J. J. Hooft,
Fernando Vargas,
Y. Vázquez-Baeza,
E. Vogtmann,
Max von Hippel,
William Walters,
Yunhu Wan,
Mingxun Wang,
Jonathan Warren,
Kyle C. Weber,
Kyle C. Weber,
Chase Williamson,
A. Willis,
Z. Xu,
Jesse R. Zaneveld,
Yilong Zhang,
R. Knight,
J. Caporaso
|
10 |
2018 |
10
🐜
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|
🐜
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QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
120 auth.
Evan Bolyen,
J. Rideout,
Matthew R. Dillon,
N. Bokulich,
C. Abnet,
Gabriel A. Al-Ghalith,
Harriet Alexander,
Harriet Alexander,
E. Alm,
Manimozhiyan Arumugam,
F. Asnicar,
Yang Bai,
J. Bisanz,
K. Bittinger,
A. Brejnrod,
...
Colin J. Brislawn,
C. T. Brown,
B. Callahan,
A. Caraballo-Rodríguez,
John H. Chase,
Emily K. Cope,
R. R. Silva,
P. Dorrestein,
G. Douglas,
D. Durall,
C. Duvallet,
C. Edwardson,
Madeleine Ernst,
M. Estaki,
Jennifer T. Fouquier,
J. Gauglitz,
D. Gibson,
Antonio Gonzalez,
Kestrel Gorlick,
Jiarong Guo,
Benjamin M Hillmann,
S. Holmes,
H. Holste,
C. Huttenhower,
C. Huttenhower,
G. Huttley,
Stefan Janssen,
A. Jarmusch,
Lingjing Jiang,
Benjamin D. Kaehler,
K. Kang,
K. Kang,
Christopher R. Keefe,
P. Keim,
S. Kelley,
D. Knights,
I. Koester,
I. Koester,
T. Kosciólek,
Jorden Kreps,
M. Langille,
Joslynn S. Lee,
R. Ley,
R. Ley,
Yong-xin Liu,
E. Loftfield,
C. Lozupone,
Massoud Maher,
C. Marotz,
Bryan D. Martin,
Daniel McDonald,
L. McIver,
L. McIver,
A. Melnik,
J. Metcalf,
S. C. Morgan,
James T. Morton,
Ahmad Turan Naimey,
Jose A Navas-Molina,
Jose A Navas-Molina,
Louis-Félix Nothias,
Stephanie B. Orchanian,
Talima R. Pearson,
Samuel L. Peoples,
Samuel L. Peoples,
D. Petráš,
M. Preuss,
E. Pruesse,
Lasse Buur Rasmussen,
A. Rivers,
Ii Michael S Robeson,
P. Rosenthal,
N. Segata,
Michael Shaffer,
A. Shiffer,
R. Sinha,
Se Jin Song,
J. Spear,
Austin D. Swafford,
Luke R. Thompson,
Luke R. Thompson,
P. Torres,
Pauline Trinh,
A. Tripathi,
A. Tripathi,
P. Turnbaugh,
Sabah Ul-Hasan,
J. J. Hooft,
Fernando Vargas,
Y. Vázquez-Baeza,
E. Vogtmann,
Max von Hippel,
William Walters,
Yunhu Wan,
Mingxun Wang,
Jonathan Warren,
Kyle C. Weber,
Kyle C. Weber,
Chase Williamson,
A. Willis,
Z. Xu,
Jesse R. Zaneveld,
Yilong Zhang,
R. Knight,
J. Caporaso
|
10 |
2018 |
10
🐜
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|
🐜
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American Gut: an Open Platform for Citizen Science Microbiome Research
58 auth.
Daniel McDonald,
Embriette R. Hyde,
Justine W. Debelius,
James T. Morton,
Antonio Gonzalez,
Gail L Ackermann,
A. Aksenov,
B. Behsaz,
Caitriona Brennan,
Yingfeng Chen,
L. DeRight Goldasich,
P. Dorrestein,
R. Dunn,
A. Fahimipour,
James Gaffney,
...
J. Gilbert,
Grant Gogul,
Jessica L. Green,
P. Hugenholtz,
G. Humphrey,
C. Huttenhower,
M. Jackson,
Stefan Janssen,
D. Jeste,
Lingjing Jiang,
S. Kelley,
D. Knights,
T. Kosciólek,
J. Ladau,
J. Leach,
C. Marotz,
D. Meleshko,
A. Melnik,
J. Metcalf,
H. Mohimani,
E. Montassier,
Jose A Navas-Molina,
Tanya T. Nguyen,
S. Peddada,
P. Pevzner,
K. Pollard,
Gholamali Rahnavard,
A. Robbins-Pianka,
Naseer Sangwan,
Joshua Shorenstein,
L. Smarr,
Se Jin Song,
T. Spector,
Austin D. Swafford,
V. Thackray,
Luke R. Thompson,
A. Tripathi,
Y. Vázquez-Baeza,
Alison Vrbanac,
P. Wischmeyer,
Elaine Wolfe,
Qiyun Zhu,
R. Knight
|
9 |
2018 |
9
🐜
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|
🐜
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Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
20 auth.
J. Rideout,
J. Rideout,
Yan He,
Jose A Navas-Molina,
William Walters,
L. Ursell,
S. Gibbons,
S. Gibbons,
John H. Chase,
Daniel McDonald,
...
Antonio Gonzalez,
A. Robbins-Pianka,
J. Clemente,
J. Gilbert,
J. Gilbert,
Susan M. Huse,
Hong-Wei Zhou,
R. Knight,
R. Knight,
J. Caporaso
|
9 |
2014 |
9
🐜
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|
🦁
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Advancing our understanding of the human microbiome using QIIME.
16 auth.
Jose A Navas-Molina,
J. Peralta‐Sánchez,
Antonio Gonzalez,
Paul J. McMurdie,
Y. Vázquez-Baeza,
Z. Xu,
L. Ursell,
C. Lauber,
Hongwei Zhou,
Se Jin Song,
...
James Huntley,
Gail L Ackermann,
Donna berg-Lyons,
S. Holmes,
J. Caporaso,
R. Knight
|
8 |
2013 |
8
🦁
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|
🐜
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Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
112 auth.
Evan Bolyen,
J. Rideout,
Matthew R. Dillon,
N. Bokulich,
C. Abnet,
Gabriel A. Al-Ghalith,
Harriet Alexander,
E. Alm,
Manimozhiyan Arumugam,
F. Asnicar,
Yang Bai,
J. Bisanz,
K. Bittinger,
A. Brejnrod,
Colin J. Brislawn,
...
C. T. Brown,
B. Callahan,
A. Caraballo-Rodríguez,
John H. Chase,
Emily K. Cope,
R. D. da Silva,
C. Diener,
P. Dorrestein,
G. Douglas,
D. Durall,
C. Duvallet,
C. Edwardson,
Madeleine Ernst,
M. Estaki,
Jennifer T. Fouquier,
J. Gauglitz,
S. Gibbons,
D. Gibson,
Antonio Gonzalez,
Kestrel Gorlick,
Jiarong Guo,
Benjamin M Hillmann,
S. Holmes,
H. Holste,
C. Huttenhower,
G. Huttley,
Stefan Janssen,
A. Jarmusch,
Lingjing Jiang,
Benjamin D. Kaehler,
K. Kang,
Christopher R. Keefe,
P. Keim,
S. Kelley,
D. Knights,
I. Koester,
T. Kosciólek,
Jorden Kreps,
M. Langille,
Joslynn S. Lee,
R. Ley,
Yong-xin Liu,
E. Loftfield,
C. Lozupone,
Massoud Maher,
C. Marotz,
Bryan D. Martin,
Daniel McDonald,
L. McIver,
A. Melnik,
J. Metcalf,
S. C. Morgan,
James T. Morton,
Ahmad Turan Naimey,
Jose A Navas-Molina,
Louis-Félix Nothias,
Stephanie B. Orchanian,
Talima R. Pearson,
Samuel L. Peoples,
D. Petráš,
M. Preuss,
E. Pruesse,
Lasse Buur Rasmussen,
A. Rivers,
M. Robeson,
P. Rosenthal,
N. Segata,
Michael Shaffer,
A. Shiffer,
R. Sinha,
Se Jin Song,
J. Spear,
Austin D. Swafford,
Luke R. Thompson,
P. Torres,
Pauline Trinh,
A. Tripathi,
P. Turnbaugh,
Sabah Ul-Hasan,
J. V. D. van der Hooft,
Fernando Vargas,
Y. Vázquez-Baeza,
E. Vogtmann,
Max von Hippel,
William Walters,
Yunhu Wan,
Mingxun Wang,
Jonathan Warren,
Kyle C. Weber,
C. H. Williamson,
A. Willis,
Z. Xu,
Jesse R. Zaneveld,
Yilong Zhang,
Qiyun Zhu,
R. Knight,
J. Caporaso
|
8 |
2019 |
8
🐜
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|
🐜
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Qiita: rapid, web-enabled microbiome meta-analysis
23 auth.
Antonio Gonzalez,
Jose A Navas-Molina,
T. Kosciólek,
Daniel McDonald,
Y. Vázquez-Baeza,
Gail L Ackermann,
J. Dereus,
Stefan Janssen,
Austin D. Swafford,
Stephanie B. Orchanian,
...
J. Sanders,
Joshua Shorenstein,
H. Holste,
Semar Petrus,
A. Robbins-Pianka,
Colin J. Brislawn,
Mingxun Wang,
J. Rideout,
Evan Bolyen,
Matthew R. Dillon,
J. Caporaso,
P. Dorrestein,
R. Knight
|
8 |
2018 |
8
🐜
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|
🐜
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Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity
23 auth.
S. Shalapour,
Xue-jia Lin,
Ingmar N. Bastian,
John Brain,
Alastair D. Burt,
A. Aksenov,
Alison Vrbanac,
Weihua Li,
Andres Perkins,
Takaji Matsutani,
...
Zhenyu Zhong,
D. Dhar,
Jose A Navas-Molina,
Jun Xu,
Rohit Loomba,
M. Downes,
R. Yu,
Ronald M. Evans,
P. Dorrestein,
Rob Knight,
Christopher Benner,
Q. Anstee,
Michael Karin
|
8 |
2017 |
8
🐜
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|
🐜
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Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information
12 auth.
Stefan Janssen,
Daniel McDonald,
Antonio Gonzalez,
Jose A Navas-Molina,
Lingjing Jiang,
Z. Xu,
...
K. Winker,
D. Kado,
E. Orwoll,
M. Manary,
S. Mirarab,
R. Knight
|
8 |
2018 |
8
🐜
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|
🐜
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Balance Trees Reveal Microbial Niche Differentiation
13 auth.
James T. Morton,
J. Sanders,
R. Quinn,
Daniel McDonald,
Antonio Gonzalez,
Y. Vázquez-Baeza,
Jose A Navas-Molina,
Se Jin Song,
J. Metcalf,
Embriette R. Hyde,
...
M. Lladser,
P. Dorrestein,
R. Knight
|
7 |
2017 |
7
🐜
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|
🐜
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Open-Source Sequence Clustering Methods Improve the State Of the Art
10 auth.
Evguenia Kopylova,
Jose A Navas-Molina,
C. Mercier,
Z. Xu,
F. Mahé,
Yan He,
...
Hong-Wei Zhou,
Torbjørn Rognes,
J. Caporaso,
R. Knight
|
7 |
2016 |
7
🐜
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