|
🐜
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
112 auth.
Evan Bolyen,
J. Rideout,
Matthew R. Dillon,
N. Bokulich,
C. Abnet,
Gabriel A. Al-Ghalith,
Harriet Alexander,
E. Alm,
Manimozhiyan Arumugam,
F. Asnicar,
Yang Bai,
J. Bisanz,
K. Bittinger,
A. Brejnrod,
Colin J. Brislawn,
...
C. T. Brown,
B. Callahan,
A. Caraballo-Rodríguez,
John H. Chase,
Emily K. Cope,
R. D. da Silva,
C. Diener,
P. Dorrestein,
G. Douglas,
D. Durall,
C. Duvallet,
C. Edwardson,
Madeleine Ernst,
M. Estaki,
Jennifer T. Fouquier,
J. Gauglitz,
S. Gibbons,
D. Gibson,
Antonio Gonzalez,
Kestrel Gorlick,
Jiarong Guo,
Benjamin M Hillmann,
S. Holmes,
H. Holste,
C. Huttenhower,
G. Huttley,
Stefan Janssen,
A. Jarmusch,
Lingjing Jiang,
Benjamin D. Kaehler,
K. Kang,
Christopher R. Keefe,
P. Keim,
S. Kelley,
D. Knights,
I. Koester,
T. Kosciólek,
Jorden Kreps,
M. Langille,
Joslynn S. Lee,
R. Ley,
Yong-xin Liu,
E. Loftfield,
C. Lozupone,
Massoud Maher,
C. Marotz,
Bryan D. Martin,
Daniel McDonald,
L. McIver,
A. Melnik,
J. Metcalf,
S. C. Morgan,
James T. Morton,
Ahmad Turan Naimey,
Jose A Navas-Molina,
Louis-Félix Nothias,
Stephanie B. Orchanian,
Talima R. Pearson,
Samuel L. Peoples,
D. Petráš,
M. Preuss,
E. Pruesse,
Lasse Buur Rasmussen,
A. Rivers,
M. Robeson,
P. Rosenthal,
N. Segata,
Michael Shaffer,
A. Shiffer,
R. Sinha,
Se Jin Song,
J. Spear,
Austin D. Swafford,
Luke R. Thompson,
P. Torres,
Pauline Trinh,
A. Tripathi,
P. Turnbaugh,
Sabah Ul-Hasan,
J. V. D. van der Hooft,
Fernando Vargas,
Y. Vázquez-Baeza,
E. Vogtmann,
Max von Hippel,
William Walters,
Yunhu Wan,
Mingxun Wang,
Jonathan Warren,
Kyle C. Weber,
C. H. Williamson,
A. Willis,
Z. Xu,
Jesse R. Zaneveld,
Yilong Zhang,
Qiyun Zhu,
R. Knight,
J. Caporaso
|
13 |
2019 |
13
🐜
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|
🐜
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Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
127 auth.
Mingxun Wang,
Jeremy J. Carver,
Vanessa V. Phelan,
Laura M. Sanchez,
Neha Garg,
Yao Peng,
Don D. Nguyen,
J. Watrous,
Clifford A. Kapono,
Tal Luzzatto-Knaan,
Carla Porto,
Amina Bouslimani,
A. Melnik,
Michael J. Meehan,
Wei-Ting Liu,
...
M. Crüsemann,
Paul D. Boudreau,
E. Esquenazi,
Mario Sandoval-Calderón,
R. Kersten,
L. Pace,
R. Quinn,
Katherine R. Duncan,
Cheng-Chih Hsu,
D. Floros,
R. Gavilán,
Karin Kleigrewe,
T. Northen,
R. Dutton,
D. Parrot,
Erin E. Carlson,
B. Aigle,
C. F. Michelsen,
L. Jelsbak,
Christian Sohlenkamp,
P. Pevzner,
A. Edlund,
J. McLean,
J. Piel,
B. Murphy,
L. Gerwick,
C. Liaw,
Yu-Liang Yang,
H. Humpf,
M. Maansson,
R. Keyzers,
A. Sims,
Andrew R. Johnson,
A. Sidebottom,
Brian E. Sedio,
Andreas K. Klitgaard,
Charles B. Larson,
Cristopher A Boya P,
Daniel Torres-Mendoza,
D. Gonzalez,
D. Silva,
L. M. Marques,
D. Demarque,
E. Pociūtė,
E. O’Neill,
Enora Briand,
Eric J. N. Helfrich,
Eve A Granatosky,
E. Glukhov,
Florian Ryffel,
H. Houson,
H. Mohimani,
Jenan J. Kharbush,
Yi Zeng,
J. Vorholt,
Kenji L. Kurita,
Pep Charusanti,
K. McPhail,
K. Nielsen,
L. Vuong,
Maryam Elfeki,
Matthew F. Traxler,
Niclas Engene,
Nobuhiro Koyama,
Oliver B. Vining,
R. Baric,
Ricardo R. Silva,
Samantha J. Mascuch,
S. Tomasi,
Stefan Jenkins,
V. Macherla,
Thomas Hoffman,
V. Agarwal,
P. Williams,
Jingqui Dai,
R. Neupane,
Joshua R. Gurr,
A. M. C. Rodriguez,
Anne Lamsa,
Chen Zhang,
Kathleen Dorrestein,
B. Duggan,
J. Almaliti,
Pierre-Marie Allard,
P. Phapale,
Louis-Félix Nothias,
T. Alexandrov,
M. Litaudon,
J. Wolfender,
J. Kyle,
T. Metz,
Tyler Peryea,
Dac-Trung Nguyen,
Danielle Vanleer,
P. Shinn,
A. Jadhav,
R. Müller,
K. Waters,
Wenyuan Shi,
Xueting Liu,
Lixin Zhang,
R. Knight,
P. Jensen,
B. Palsson,
K. Pogliano,
Roger G. Linington,
Marcelino Gutiérrez,
N. Lopes,
W. Gerwick,
B. Moore,
P. Dorrestein,
N. Bandeira
|
11 |
2016 |
11
🐜
|
|
🐜
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QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
120 auth.
Evan Bolyen,
J. Rideout,
Matthew R. Dillon,
N. Bokulich,
C. Abnet,
Gabriel A. Al-Ghalith,
Harriet Alexander,
Harriet Alexander,
E. Alm,
Manimozhiyan Arumugam,
F. Asnicar,
Yang Bai,
J. Bisanz,
K. Bittinger,
A. Brejnrod,
...
Colin J. Brislawn,
C. T. Brown,
B. Callahan,
A. Caraballo-Rodríguez,
John H. Chase,
Emily K. Cope,
R. R. Silva,
P. Dorrestein,
G. Douglas,
D. Durall,
C. Duvallet,
C. Edwardson,
Madeleine Ernst,
M. Estaki,
Jennifer T. Fouquier,
J. Gauglitz,
D. Gibson,
Antonio Gonzalez,
Kestrel Gorlick,
Jiarong Guo,
Benjamin M Hillmann,
S. Holmes,
H. Holste,
C. Huttenhower,
C. Huttenhower,
G. Huttley,
Stefan Janssen,
A. Jarmusch,
Lingjing Jiang,
Benjamin D. Kaehler,
K. Kang,
K. Kang,
Christopher R. Keefe,
P. Keim,
S. Kelley,
D. Knights,
I. Koester,
I. Koester,
T. Kosciólek,
Jorden Kreps,
M. Langille,
Joslynn S. Lee,
R. Ley,
R. Ley,
Yong-xin Liu,
E. Loftfield,
C. Lozupone,
Massoud Maher,
C. Marotz,
Bryan D. Martin,
Daniel McDonald,
L. McIver,
L. McIver,
A. Melnik,
J. Metcalf,
S. C. Morgan,
James T. Morton,
Ahmad Turan Naimey,
Jose A Navas-Molina,
Jose A Navas-Molina,
Louis-Félix Nothias,
Stephanie B. Orchanian,
Talima R. Pearson,
Samuel L. Peoples,
Samuel L. Peoples,
D. Petráš,
M. Preuss,
E. Pruesse,
Lasse Buur Rasmussen,
A. Rivers,
Ii Michael S Robeson,
P. Rosenthal,
N. Segata,
Michael Shaffer,
A. Shiffer,
R. Sinha,
Se Jin Song,
J. Spear,
Austin D. Swafford,
Luke R. Thompson,
Luke R. Thompson,
P. Torres,
Pauline Trinh,
A. Tripathi,
A. Tripathi,
P. Turnbaugh,
Sabah Ul-Hasan,
J. J. Hooft,
Fernando Vargas,
Y. Vázquez-Baeza,
E. Vogtmann,
Max von Hippel,
William Walters,
Yunhu Wan,
Mingxun Wang,
Jonathan Warren,
Kyle C. Weber,
Kyle C. Weber,
Chase Williamson,
A. Willis,
Z. Xu,
Jesse R. Zaneveld,
Yilong Zhang,
R. Knight,
J. Caporaso
|
10 |
2018 |
10
🐜
|
|
🦁
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Feature-Based Molecular Networking in the GNPS Analysis Environment
62 auth.
Louis-Félix Nothias,
D. Petráš,
Robin Schmid,
Kai Dührkop,
Johannes Rainer,
Abinesh Sarvepalli,
Ivan V. Protsyuk,
Madeleine Ernst,
H. Tsugawa,
Markus Fleischauer,
Fabian Aicheler,
A. Aksenov,
Oliver Alka,
Pierre-Marie Allard,
A. Barsch,
...
X. Cachet,
A. Caraballo-Rodríguez,
R. D. da Silva,
Tam Dang,
Neha Garg,
J. Gauglitz,
A. Gurevich,
G. Isaac,
A. Jarmusch,
Z. Kameník,
K. Kang,
Nikolas Kessler,
I. Koester,
A. Korf,
A. Le Gouellec,
M. Ludwig,
C. Martin H,
Laura-Isobel McCall,
Jonathan McSayles,
S. Meyer,
H. Mohimani,
M. Morsy,
Oriane Moyne,
S. Neumann,
H. Neuweger,
Ngoc Hung Nguyen,
Mélissa Nothias-Esposito,
J. Paolini,
Vanessa V. Phelan,
T. Pluskal,
R. Quinn,
Simon Rogers,
Bindesh Shrestha,
A. Tripathi,
J. V. D. van der Hooft,
Fernando Vargas,
Kelly C. Weldon,
M. Witting,
Heejung Yang,
Zheng Zhang,
Florian Zubeil,
O. Kohlbacher,
Sebastian Böcker,
T. Alexandrov,
N. Bandeira,
Mingxun Wang,
P. Dorrestein
|
9 |
2019 |
9
🦁
|
|
🐜
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Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
112 auth.
Evan Bolyen,
J. Rideout,
Matthew R. Dillon,
N. Bokulich,
C. Abnet,
Gabriel A. Al-Ghalith,
Harriet Alexander,
E. Alm,
Manimozhiyan Arumugam,
F. Asnicar,
Yang Bai,
J. Bisanz,
K. Bittinger,
A. Brejnrod,
Colin J. Brislawn,
...
C. T. Brown,
B. Callahan,
A. Caraballo-Rodríguez,
John H. Chase,
Emily K. Cope,
R. D. da Silva,
C. Diener,
P. Dorrestein,
G. Douglas,
D. Durall,
C. Duvallet,
C. Edwardson,
Madeleine Ernst,
M. Estaki,
Jennifer T. Fouquier,
J. Gauglitz,
S. Gibbons,
D. Gibson,
Antonio Gonzalez,
Kestrel Gorlick,
Jiarong Guo,
Benjamin M Hillmann,
S. Holmes,
H. Holste,
C. Huttenhower,
G. Huttley,
Stefan Janssen,
A. Jarmusch,
Lingjing Jiang,
Benjamin D. Kaehler,
K. Kang,
Christopher R. Keefe,
P. Keim,
S. Kelley,
D. Knights,
I. Koester,
T. Kosciólek,
Jorden Kreps,
M. Langille,
Joslynn S. Lee,
R. Ley,
Yong-xin Liu,
E. Loftfield,
C. Lozupone,
Massoud Maher,
C. Marotz,
Bryan D. Martin,
Daniel McDonald,
L. McIver,
A. Melnik,
J. Metcalf,
S. C. Morgan,
James T. Morton,
Ahmad Turan Naimey,
Jose A Navas-Molina,
Louis-Félix Nothias,
Stephanie B. Orchanian,
Talima R. Pearson,
Samuel L. Peoples,
D. Petráš,
M. Preuss,
E. Pruesse,
Lasse Buur Rasmussen,
A. Rivers,
M. Robeson,
P. Rosenthal,
N. Segata,
Michael Shaffer,
A. Shiffer,
R. Sinha,
Se Jin Song,
J. Spear,
Austin D. Swafford,
Luke R. Thompson,
P. Torres,
Pauline Trinh,
A. Tripathi,
P. Turnbaugh,
Sabah Ul-Hasan,
J. V. D. van der Hooft,
Fernando Vargas,
Y. Vázquez-Baeza,
E. Vogtmann,
Max von Hippel,
William Walters,
Yunhu Wan,
Mingxun Wang,
Jonathan Warren,
Kyle C. Weber,
C. H. Williamson,
A. Willis,
Z. Xu,
Jesse R. Zaneveld,
Yilong Zhang,
Qiyun Zhu,
R. Knight,
J. Caporaso
|
8 |
2019 |
8
🐜
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|
🐜
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Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra
11 auth.
Kai Dührkop,
Louis-Félix Nothias,
Markus Fleischauer,
R. Reher,
M. Ludwig,
Martin A. Hoffmann,
...
D. Petráš,
W. Gerwick,
Juho Rousu,
P. Dorrestein,
Sebastian Böcker
|
8 |
2020 |
8
🐜
|
|
🐜
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Reproducible molecular networking of untargeted mass spectrometry data using GNPS
42 auth.
Allegra T. Aron,
Emily C. Gentry,
K. McPhail,
Louis-Félix Nothias,
Mélissa Nothias-Esposito,
Amina Bouslimani,
D. Petráš,
J. Gauglitz,
Nicole C. Sikora,
Fernando Vargas,
J. V. D. van der Hooft,
Madeleine Ernst,
K. Kang,
Christine M. Aceves,
A. Caraballo-Rodríguez,
...
I. Koester,
Kelly C. Weldon,
S. Bertrand,
C. Roullier,
Kunyang Sun,
R. Tehan,
C. Boya P.,
Martin H. Christian,
Marcelino Gutiérrez,
Aldo Moreno Ulloa,
Javier Andres Tejeda Mora,
Randy Mojica-Flores,
Johant Lakey-Beitia,
Víctor Vásquez-Chaves,
Yilue Zhang,
A. Calderón,
Nicole M. Tayler,
R. Keyzers,
F. Tugizimana,
N. Ndlovu,
A. Aksenov,
A. Jarmusch,
Robin Schmid,
A. Truman,
N. Bandeira,
Mingxun Wang,
P. Dorrestein
|
8 |
2019 |
8
🐜
|
|
🐜
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Integrative analysis of multimodal mass spectrometry data in MZmine 3
42 auth.
Robin Schmid,
S. Heuckeroth,
A. Korf,
Aleksandr Smirnov,
Owen D. Myers,
Thomas S. Dyrlund,
Roman Bushuiev,
Kevin J Murray,
Nils Hoffmann,
Miaoshan Lu,
Abinesh Sarvepalli,
Zheng Zhang,
Markus Fleischauer,
Kai Dührkop,
Mark Wesner,
...
Shawn J. Hoogstra,
E. Rudt,
Olena Mokshyna,
Corinna Brungs,
Kirill Ponomarov,
Lana Mutabdžija,
Tito Damiani,
C. Pudney,
M. Earll,
Patrick O. Helmer,
Timothy R. Fallon,
T. Schulze,
Albert Rivas‐Ubach,
Aivett Bilbao,
H. Richter,
Louis-Félix Nothias,
Mingxun Wang,
M. Orešič,
J. Weng,
Sebastian Böcker,
A. Jeibmann,
H. Hayen,
U. Karst,
P. Dorrestein,
D. Petráš,
Xiuxia Du,
T. Pluskal
|
8 |
2023 |
8
🐜
|
|
🐜
|
MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools
10 auth.
Madeleine Ernst,
K. Kang,
A. Caraballo-Rodríguez,
Louis-Félix Nothias,
Joe Wandy,
Mingxun Wang,
...
Simon Rogers,
M. Medema,
P. Dorrestein,
J. J. Hooft
|
8 |
2019 |
8
🐜
|
|
🦁
|
Bioactivity-Based Molecular Networking for the Discovery of Drug Leads in Natural Product Bioassay-Guided Fractionation.
14 auth.
Louis-Félix Nothias,
Mélissa Nothias-Esposito,
R. D. da Silva,
Mingxun Wang,
Ivan V. Protsyuk,
Zheng Zhang,
Abinesh Sarvepalli,
P. Leyssen,
D. Touboul,
J. Costa,
...
J. Paolini,
T. Alexandrov,
M. Litaudon,
P. Dorrestein
|
8 |
2018 |
8
🦁
|
|
🐬
|
Molecular Networking As a Drug Discovery, Drug Metabolism, and Precision Medicine Strategy.
R. Quinn,
Louis-Félix Nothias,
Oliver B. Vining,
Michael J. Meehan,
E. Esquenazi,
P. Dorrestein
|
8 |
2017 |
8
🐬
|
|
🐜
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Propagating annotations of molecular networks using in silico fragmentation
10 auth.
Ricardo R. da Silva,
Mingxun Wang,
Louis-Félix Nothias,
J. J. Hooft,
A. Caraballo-Rodríguez,
E. Fox,
...
Marcy J. Balunas,
J. Klassen,
N. Lopes,
P. Dorrestein
|
7 |
2018 |
7
🐜
|
|
🐜
|
Dereplication of microbial metabolites through database search of mass spectra
10 auth.
H. Mohimani,
A. Gurevich,
Alexander Shlemov,
Alla Mikheenko,
A. Korobeynikov,
Liu Cao,
...
Egor Shcherbin,
Louis-Félix Nothias,
P. Dorrestein,
P. Pevzner
|
7 |
2018 |
7
🐜
|
|
🐜
|
NPClassifier: A Deep Neural Network-Based Structural Classification Tool for Natural Products
12 auth.
Hyun Woo Kim,
Mingxun Wang,
Christopher A. Leber,
Louis-Félix Nothias,
Raphael,
Reher,
...
K. Kang,
J. J. Hooft,
P. Dorrestein,
H. William,
Gerwick,
G. Cottrell
|
7 |
2020 |
7
🐜
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