|
🐜
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Shifting the limits in wheat research and breeding using a fully annotated reference genome
201 auth.
R. Appels,
K. Eversole,
N. Stein,
C. Feuillet,
B. Keller,
J. Rogers,
C. Pozniak,
F. Choulet,
A. Distelfeld,
J. Poland,
G. Ronen,
A. Sharpe,
Omer Barad,
Kobi Baruch,
G. Keeble-Gagnère,
...
M. Mascher,
Gil Ben-Zvi,
A. Josselin,
A. Himmelbach,
F. Balfourier,
Juan J. Gutierrez-Gonzalez,
M. Hayden,
C. Koh,
G. Muehlbauer,
R. Pasam,
E. Paux,
P. Rigault,
J. Tibbits,
V. Tiwari,
M. Spannagl,
D. Lang,
H. Gundlach,
G. Haberer,
K. Mayer,
D. Ormanbekova,
Verena M. Prade,
H. Šimková,
T. Wicker,
D. Swarbreck,
Hélène Rimbert,
Marius Felder,
N. Guilhot,
G. Kaithakottil,
J. Keilwagen,
P. Leroy,
Thomas M. Lux,
S. Twardziok,
Luca Venturini,
A. Juhász,
M. Abrouk,
I. Fischer,
C. Uauy,
P. Borrill,
R. Ramirez-Gonzalez,
D. Arnaud,
Smahane Chalabi,
B. Chalhoub,
A. Cory,
R. Datla,
M. Davey,
J. Jacobs,
S. J. Robinson,
B. Steuernagel,
F. van Ex,
B. Wulff,
M. Benhamed,
A. Bendahmane,
L. Concia,
D. Latrasse,
J. Bartoš,
A. Bellec,
H. Bergès,
J. Doležel,
Z. Frenkel,
B. Gill,
A. Korol,
T. Letellier,
O. Olsen,
Kuldeep Singh,
M. Valárik,
E. V. D. van der Vossen,
S. Vautrin,
S. Weining,
T. Fahima,
Vladimir Glikson,
Dina Raats,
J. Číhalíková,
Helena Toegelová,
J. Vrána,
P. Sourdille,
Benoît Darrier,
D. Barabaschi,
L. Cattivelli,
P. Hernández,
Sergio Gálvez,
H. Budak,
Jonathan D. G. Jones,
Kamil Witek,
Guotai Yu,
I. Small,
J. Melonek,
Ruonan Zhou,
T. Belova,
K. Kanyuka,
R. King,
K. Nilsen,
S. Walkowiak,
R. Cuthbert,
R. Knox,
Krystalee Wiebe,
D. Xiang,
A. Rohde,
T. Golds,
J. Čížková,
B. A. Akpınar,
Sezgi Biyiklioglu,
Liangliang Gao,
Amidou N'Daiye,
M. Kubaláková,
J. Šafář,
Françoise Alfama,
A. Adam-Blondon,
Raphael Flores,
Claire Guerche,
M. Loaec,
H. Quesneville,
J. Condie,
J. Ens,
Ron Maclachlan,
Yifang Tan,
A. Alberti,
J. Aury,
V. Barbe,
A. Couloux,
C. Cruaud,
K. Labadie,
S. Mangenot,
P. Wincker,
G. Kaur,
M. Luo,
S. Sehgal,
P. Chhuneja,
O. Gupta,
S. Jindal,
Parampreet Kaur,
Palvi Malik,
Priti Sharma,
B. Yadav,
N. Singh,
J. Khurana,
Chanderkant Chaudhary,
P. Khurana,
Vinod Kumar,
A. Mahato,
S. Mathur,
A. Sevanthi,
N. Sharma,
Ram Sewak Singh Tomar,
Kateřina Holušová,
O. Plíhal,
M. Clark,
D. Heavens,
George Kettleborough,
Jonathan Wright,
Barbora Balcárková,
Yuqin Hu,
E. Salina,
N. Ravin,
K. Skryabin,
A. Beletsky,
V. Kadnikov,
A. Mardanov,
Michail A. Nesterov,
A. Rakitin,
E. Sergeeva,
H. Handa,
H. Kanamori,
S. Katagiri,
F. Kobayashi,
S. Nasuda,
Tsuyoshi Tanaka,
Jianzhon Wu,
F. Cattonaro,
Min Jiumeng,
Karl G. Kugler,
M. Pfeifer,
S. Sandve,
Xu Xun,
Bujie Zhan,
J. Batley,
P. Bayer,
D. Edwards,
S. Hayashi,
Zuzana Tulpová,
Paul Visendi,
Licao Cui,
Xianghong Du,
Kewei Feng,
Xiaojun Nie,
W. Tong,
Le Wang
|
11 |
2018 |
11
🐜
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🐜
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Analyses of pig genomes provide insight into porcine demography and evolution
136 auth.
M. Groenen,
A. Archibald,
H. Uenishi,
C. Tuggle,
Y. Takeuchi,
M. Rothschild,
C. Rogel-Gaillard,
Chankyu Park,
D. Milan,
H. Megens,
Shengting Li,
D. Larkin,
Heebal Kim,
Laurent A. F. Frantz,
M. Cáccamo,
...
Hyeonju Ahn,
Bronwen L. Aken,
A. Anselmo,
Christian Anthon,
L. Auvil,
B. Badaoui,
C. Beattie,
C. Bendixen,
Daniel Berman,
F. Blecha,
J. Blomberg,
L. Bolund,
M. Bosse,
S. Botti,
Zhan Bujie,
Megan Bystrom,
Boris Capitanu,
D. Carvalho-Silva,
P. Chardon,
Celine Chen,
R. Cheng,
Sang-Haeng Choi,
W. Chow,
R. Clark,
C. Clee,
R. Crooijmans,
H. Dawson,
P. Déhais,
Fioravante De Sapio,
B. Dibbits,
N. Drou,
Z. Du,
K. Eversole,
J. Fadista,
S. Fairley,
T. Faraut,
G. Faulkner,
K. Fowler,
M. Fredholm,
E. Fritz,
J. Gilbert,
E. Giuffra,
J. Gorodkin,
D. Griffin,
J. Harrow,
Alexander Hayward,
K. Howe,
Zhi-Liang Hu,
S. Humphray,
T. Hunt,
H. Hornshøj,
J. Jeon,
P. Jern,
Matthew C. Jones,
J. Jurka,
H. Kanamori,
R. Kapetanovic,
Jaebum Kim,
Jae-hwan Kim,
Kyu-Won Kim,
Tae-Hun Kim,
G. Larson,
Kyooyeol Lee,
Kyung-Tai Lee,
R. Leggett,
H. Lewin,
Yingrui Li,
Wansheng Liu,
J. Loveland,
Yao Lu,
J. Lunney,
Jian Ma,
O. Madsen,
Katherine M Mann,
L. Matthews,
Stuart Mclaren,
T. Morozumi,
M. Murtaugh,
Jitendra Narayan,
Dinh Truong Nguyen,
Peixiang Ni,
S. Oh,
S. Onteru,
F. Panitz,
E. Park,
Hong-Seog Park,
G. Pascal,
Yogesh Paudel,
M. Pérez-Enciso,
R. Ramirez-Gonzalez,
J. Reecy,
S. Rodriguez-Zas,
G. Rohrer,
L. Rund,
Y. Sang,
K. Schachtschneider,
J. Schraiber,
J. Schwartz,
L. Scobie,
C. Scott,
S. Searle,
B. Servin,
B. Southey,
G. Sperber,
P. Stadler,
J. Sweedler,
Hakim Tafer,
B. Thomsen,
R. Wali,
Jian Wang,
Jun Wang,
S. White,
Xun Xu,
M. Yerle,
Guojie Zhang,
Jianguo Zhang,
Jie Zhang,
Shuhong Zhao,
J. Rogers,
C. Churcher,
L. Schook
|
10 |
2012 |
10
🐜
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🦁
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The transcriptional landscape of polyploid wheat
37 auth.
R. Ramirez-Gonzalez,
P. Borrill,
D. Lang,
S. Harrington,
J. Brinton,
Luca Venturini,
M. Davey,
J. Jacobs,
F. van Ex,
A. Pasha,
Y. Khedikar,
S. J. Robinson,
A. Cory,
T. Florio,
L. Concia,
...
C. Juery,
H. Schoonbeek,
B. Steuernagel,
D. Xiang,
C. Ridout,
B. Chalhoub,
K. Mayer,
M. Benhamed,
D. Latrasse,
A. Bendahmane,
B. Wulff,
R. Appels,
V. Tiwari,
R. Datla,
F. Choulet,
C. Pozniak,
N. Provart,
A. Sharpe,
E. Paux,
M. Spannagl,
A. Bräutigam,
C. Uauy
|
9 |
2018 |
9
🦁
|
|
🐜
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Multiple wheat genomes reveal global variation in modern breeding
98 auth.
S. Walkowiak,
Liangliang Gao,
Cécile Monat,
G. Haberer,
Mulualem T. Kassa,
J. Brinton,
R. Ramirez-Gonzalez,
Markus C. Kolodziej,
Emily E. Delorean,
Dinushika Thambugala,
V. Klymiuk,
Brook Byrns,
H. Gundlach,
V. Bandi,
Jorge Núñez Siri,
...
K. Nilsen,
Catharine Aquino,
A. Himmelbach,
D. Copetti,
T. Ban,
Luca Venturini,
M. Bevan,
Bernardo J. Clavijo,
D. Koo,
J. Ens,
Krystalee Wiebe,
A. N’Diaye,
A. Fritz,
C. Gutwin,
A. Fiebig,
Christine Fosker,
B. Fu,
G. G. Accinelli,
K. Gardner,
N. Fradgley,
Juan J. Gutierrez-Gonzalez,
Gwyneth Halstead-Nussloch,
Masaomi Hatakeyama,
C. Koh,
J. Deek,
A. Costamagna,
P. Fobert,
D. Heavens,
H. Kanamori,
K. Kawaura,
F. Kobayashi,
K. Krasileva,
Tony C. Y. Kuo,
N. McKenzie,
Kazuki Murata,
Yusuke Nabeka,
Timothy Paape,
S. Padmarasu,
Lawrence Percival-Alwyn,
Sateesh Kagale,
U. Scholz,
J. Sese,
Philomin Juliana,
R. Singh,
Rie Shimizu‐Inatsugi,
D. Swarbreck,
J. Cockram,
H. Budak,
Toshiaki Tameshige,
Tsuyoshi Tanaka,
H. Tsuji,
Jonathan Wright,
Jianzhon Wu,
B. Steuernagel,
I. Small,
S. Cloutier,
G. Keeble-Gagnère,
G. Muehlbauer,
J. Tibbets,
S. Nasuda,
J. Melonek,
P. Hucl,
A. Sharpe,
M. Clark,
E. Legg,
A. Bharti,
P. Langridge,
Anthony Hall,
C. Uauy,
M. Mascher,
S. Krattinger,
H. Handa,
K. Shimizu,
A. Distelfeld,
K. Chalmers,
B. Keller,
K. Mayer,
J. Poland,
N. Stein,
C. McCartney,
M. Spannagl,
T. Wicker,
C. Pozniak
|
9 |
2020 |
9
🐜
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|
🐜
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Assemblathon 1: a competitive assessment of de novo short read assembly methods.
71 auth.
Dent Earl,
K. Bradnam,
John A St John,
A. Darling,
D. Lin,
Joseph N. Fass,
H. O. Yu,
Vince Buffalo,
D. Zerbino,
M. Diekhans,
N. Nguyen,
P. Ariyaratne,
W. Sung,
Z. Ning,
M. Haimel,
...
J. Simpson,
Nuno A. Fonseca,
I. Birol,
T. R. Docking,
Isaac Y. Ho,
D. Rokhsar,
R. Chikhi,
D. Lavenier,
Guillaume Chapuis,
D. Naquin,
Nicolas Maillet,
M. Schatz,
David R. Kelley,
A. Phillippy,
S. Koren,
Shiaw-Pyng Yang,
Wei Wu,
Wen-Chi Chou,
Anuj Srivastava,
T. Shaw,
J. Ruby,
Peter Skewes-Cox,
Miguel Betegon,
M. Dimon,
Victor V. Solovyev,
I. Seledtsov,
P. D. Kosarev,
D. Vorobyev,
R. Ramirez-Gonzalez,
R. Leggett,
D. MacLean,
Fangfang Xia,
Ruibang Luo,
Zhenyu Li,
Yinlong Xie,
Binghang Liu,
S. Gnerre,
Iain MacCallum,
Dariusz Przybylski,
Filipe J. Ribeiro,
Shuangye Yin,
Ted Sharpe,
Giles Hall,
P. Kersey,
R. Durbin,
S. Jackman,
Jarrod Chapman,
Xiaoqiu Huang,
J. Derisi,
M. Cáccamo,
Yingrui Li,
D. Jaffe,
R. Green,
D. Haussler,
I. Korf,
B. Paten
|
9 |
2011 |
9
🐜
|
|
🐜
|
Uncovering hidden variation in polyploid wheat
15 auth.
K. Krasileva,
Hans A. Vasquez-Gross,
T. Howell,
P. Bailey,
Francine Paraiso,
L. Clissold,
J. Simmonds,
R. Ramirez-Gonzalez,
Xiaodong Wang,
P. Borrill,
...
Christine Fosker,
S. Ayling,
A. Phillips,
C. Uauy,
J. Dubcovsky
|
8 |
2017 |
8
🐜
|
|
🐜
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An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations
39 auth.
Bernardo J. Clavijo,
Luca Venturini,
Christian Schudoma,
G. G. Accinelli,
G. Kaithakottil,
Jonathan Wright,
P. Borrill,
George Kettleborough,
D. Heavens,
Helen Chapman,
J. Lipscombe,
T. Barker,
Fu-Hao Lu,
N. McKenzie,
Dina Raats,
...
R. Ramirez-Gonzalez,
Aurore Coince,
Ned Peel,
Lawrence Percival-Alwyn,
Owen Duncan,
Josua Trösch,
Guotai Yu,
D. Bolser,
Guy Namaati,
A. Kerhornou,
M. Spannagl,
H. Gundlach,
G. Haberer,
Robert P. Davey,
Christine Fosker,
F. Palma,
A. Phillips,
A. Millar,
P. Kersey,
C. Uauy,
K. Krasileva,
D. Swarbreck,
M. Bevan,
M. Clark
|
8 |
2016 |
8
🐜
|
|
🐬
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expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform1[OPEN]
P. Borrill,
R. Ramirez-Gonzalez,
C. Uauy
|
8 |
2016 |
8
🐬
|
|
🐜
|
Speed breeding in growth chambers and glasshouses for crop breeding and model plant research
29 auth.
Sreya Ghosh,
Amy Watson,
O. Gonzalez-Navarro,
R. Ramirez-Gonzalez,
Luis Yanes,
Marcela A. Mendoza-Suárez,
J. Simmonds,
Rachel Wells,
Tracey Rayner,
Phon Green,
Amber N. Hafeez,
S. Hayta,
R. Melton,
A. Steed,
A. Sarkar,
...
J. Carter,
Lionel Perkins,
J. Lord,
M. Tester,
A. Osbourn,
M. Moscou,
P. Nicholson,
W. Harwood,
Cathie Martin,
C. Domoney,
C. Uauy,
B. Hazard,
B. Wulff,
L. Hickey
|
8 |
2018 |
8
🐜
|
|
🐜
|
Impact of transposable elements on genome structure and evolution in bread wheat
10 auth.
T. Wicker,
H. Gundlach,
M. Spannagl,
C. Uauy,
P. Borrill,
R. Ramirez-Gonzalez,
...
Romain De Oliveira,
K. Mayer,
E. Paux,
F. Choulet
|
7 |
2018 |
7
🐜
|
|
🦁
|
RNA-Seq bulked segregant analysis enables the identification of high-resolution genetic markers for breeding in hexaploid wheat.
9 auth.
R. Ramirez-Gonzalez,
V. Segovia,
N. Bird,
P. Fenwick,
S. Holdgate,
S. Berry,
...
P. Jack,
M. Cáccamo,
C. Uauy
|
7 |
2015 |
7
🦁
|
|
🐬
|
Sequencing quality assessment tools to enable data-driven informatics for high throughput genomics
R. Leggett,
R. Ramirez-Gonzalez,
Bernardo J. Clavijo,
D. Waite,
Robert P. Davey
|
7 |
2013 |
7
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