|
🐬
|
Deep learning: new computational modelling techniques for genomics
Gökçen Eraslan,
Žiga Avsec,
J. Gagneur,
Fabian J Theis
|
9 |
2019 |
9
🐬
|
|
🐢
|
Accurate proteome-wide missense variant effect prediction with AlphaMissense
16 auth.
Jun Cheng,
Guido Novati,
Joshua Pan,
Clare Bycroft,
Akvilė Žemgulytė,
Taylor Applebaum,
A. Pritzel,
L. H. Wong,
Michal Zielinski,
Tobias Sargeant,
...
Rosalia G. Schneider,
Andrew Senior,
J. Jumper,
D. Hassabis,
Pushmeet Kohli,
Žiga Avsec
|
9 |
2023 |
9
🐢
|
|
🦁
|
Effective gene expression prediction from sequence by integrating long-range interactions
10 auth.
Žiga Avsec,
Vikram Agarwal,
D. Visentin,
J. Ledsam,
A. Grabska-Barwinska,
Kyle R. Taylor,
...
Yannis Assael,
J. Jumper,
Pushmeet Kohli,
David R. Kelley
|
9 |
2021 |
9
🦁
|
|
🦁
|
Base-resolution models of transcription factor binding reveal soft motif syntax
11 auth.
Žiga Avsec,
Melanie Weilert,
Avanti Shrikumar,
S. Krueger,
Amr M. Alexandari,
Khyati Dalal,
...
Robin Fropf,
Charles E. McAnany,
J. Gagneur,
A. Kundaje,
J. Zeitlinger
|
8 |
2019 |
8
🦁
|
|
🐜
|
Mapping single-cell data to reference atlases by transfer learning
13 auth.
M. Lotfollahi,
Mohsen Naghipourfar,
Malte D. Luecken,
Matin Khajavi,
M. Büttner,
Marco Wagenstetter,
Žiga Avsec,
Adam Gayoso,
N. Yosef,
M. Interlandi,
...
Sergei Rybakov,
A. Misharin,
Fabian J Theis
|
8 |
2021 |
8
🐜
|
|
🐜
|
MMSplice: modular modeling improves the predictions of genetic variant effects on splicing
7 auth.
Jun Cheng,
T. Nguyen,
Kamil J. Cygan,
M. H. Çelik,
W. Fairbrother,
Žiga Avsec,
...
J. Gagneur
|
7 |
2019 |
7
🐜
|
|
🐜
|
OUTRIDER: A statistical method for detecting aberrantly expressed genes in RNA sequencing data
9 auth.
Felix Brechtmann,
Agnė Matusevičiūtė,
Christian Mertes,
Vicente A. Yépez,
Žiga Avsec,
Max Herzog,
...
Daniel M Bader,
H. Prokisch,
J. Gagneur
|
7 |
2018 |
7
🐜
|
|
🦁
|
The Kipoi repository accelerates community exchange and reuse of predictive models for genomics
13 auth.
Žiga Avsec,
Roman Kreuzhuber,
Johnny Israeli,
Nancy Xu,
Jun Cheng,
Avanti Shrikumar,
Abhimanyu Banerjee,
Daniel S. Kim,
T. Beier,
L. Urban,
...
A. Kundaje,
O. Stegle,
J. Gagneur
|
6 |
2019 |
6
🦁
|
|
🐜
|
Mutations in MDH2, Encoding a Krebs Cycle Enzyme, Cause Early-Onset Severe Encephalopathy
36 auth.
S. Ait-El-Mkadem,
Manal Dayem-Quere,
Mirjana Gusic,
A. Chaussenot,
S. Bannwarth,
Bérengère François,
E. Génin,
K. Fragaki,
Catharina M. L. Volker-Touw,
Christelle Vasnier,
V. Serre,
K. V. van Gassen,
F. Lespinasse,
S. Richter,
G. Eisenhofer,
...
C. Rouzier,
F. Mochel,
A. de Saint-Martin,
Marie-Thérèse Abi Wardé,
Monique G M de Sain-van der Velde,
J. Jans,
J. Amiel,
Žiga Avsec,
Christian Mertes,
T. Haack,
T. Strom,
T. Meitinger,
P. Bonnen,
Robert W. Taylor,
J. Gagneur,
P. V. van Hasselt,
A. Rötig,
A. Delahodde,
H. Prokisch,
S. Fuchs,
V. Paquis-Flucklinger
|
6 |
2016 |
6
🐜
|
|
🐬
|
Deep learning: new computational modelling techniques for genomics
Gökçen Eraslan,
Žiga Avsec,
J. Gagneur,
F. Theis
|
6 |
2019 |
6
🐬
|
|
🐬
|
Cis-regulatory elements explain most of the mRNA stability variation across genes in yeast
Jun Cheng,
K. Maier,
Žiga Avsec,
Petra Rus,
J. Gagneur
|
5 |
2017 |
5
🐬
|
