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Avanti Shrikumar

International Conference on Machine Learning, Cell, Nature Genetics, Circulation Research, Nature Biotechnology
12
Role
Title
Level Year L/R
🦁 Learning Important Features Through Propagating Activation Differences
Avanti Shrikumar, Peyton Greenside, A. Kundaje 		11 2017
11
🦁
🐜 Opportunities and obstacles for deep learning in biology and medicine
36 auth. T. Ching, Daniel S. Himmelstein, Brett K. Beaulieu-Jones, Alexandr A Kalinin, Brian T Do, G. Way, E. Ferrero, P. Agapow, M. Zietz, M. M. Hoffman, W. Xie, G. Rosen, Benjamin J. Lengerich, Johnny Israeli, Jack Lanchantin, ... Stephen Woloszynek, Anne E Carpenter, Avanti Shrikumar, Jinbo Xu, Evan M. Cofer, Christopher A. Lavender, Srinivas C. Turaga, Amr M. Alexandari, Zhiyong Lu, David J Harris, David DeCaprio, Yanjun Qi, A. Kundaje, Yifan Peng, L. K. Wiley, Marwin H. S. Segler, S. Boca, S. Joshua Swamidass, Austin Huang, A. Gitter, C. Greene 		10 2017
10
🐜
🦁 Not Just a Black Box: Learning Important Features Through Propagating Activation Differences
Avanti Shrikumar, Peyton Greenside, A. Shcherbina, A. Kundaje 		9 2016
9
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🐜 Dynamic and Coordinated Epigenetic Regulation of Developmental Transitions in the Cardiac Lineage
19 auth. J. A. Wamstad, Jeffrey M. Alexander, R. Truty, Avanti Shrikumar, Fugen Li, K. Eilertson, Huiming Ding, J. Wylie, Alexander R. Pico, J. Capra, ... Genevieve D. Erwin, Steven J. Kattman, G. Keller, D. Srivastava, S. Levine, K. Pollard, A. K. Holloway, L. Boyer, B. Bruneau 		9 2012
9
🐜
🐜 Base-resolution models of transcription factor binding reveal soft motif syntax
11 auth. Ε½iga Avsec, Melanie Weilert, Avanti Shrikumar, S. Krueger, Amr M. Alexandari, Khyati Dalal, ... Robin Fropf, Charles E. McAnany, J. Gagneur, A. Kundaje, J. Zeitlinger 		8 2019
8
🐜
🐜 Transcriptional reversion of cardiac myocyte fate during mammalian cardiac regeneration.
9 auth. C. O'Meara, J. A. Wamstad, R. Gladstone, Gregory M. Fomovsky, Vincent L. Butty, Avanti Shrikumar, ... Joseph Gannon, L. Boyer, Richard T. Lee 		7 2014
7
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🦁 Technical Note on Transcription Factor Motif Discovery from Importance Scores (TF-MoDISco) version 0.5.6.5
8 auth. Avanti Shrikumar, Katherine Tian, vZiga Avsec, A. Shcherbina, Abhimanyu Banerjee, Mahfuza Sharmin, ... Surag Nair, A. Kundaje 		6 2018
6
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🐜 The Kipoi repository accelerates community exchange and reuse of predictive models for genomics
13 auth. Ε½iga Avsec, Roman Kreuzhuber, Johnny Israeli, Nancy Xu, Jun Cheng, Avanti Shrikumar, Abhimanyu Banerjee, Daniel S. Kim, T. Beier, L. Urban, ... A. Kundaje, O. Stegle, J. Gagneur 		6 2019
6
🐜
🐜 Short tandem repeats bind transcription factors to tune eukaryotic gene expression
14 auth. Connor A. Horton, Amr M. Alexandari, Michael G. B. Hayes, E. Marklund, Julia M. Schaepe, A. Aditham, Nilay Shah, Avanti Shrikumar, A. Afek, W. Greenleaf, ... Raluca GordΓ’n, J. Zeitlinger, A. Kundaje, P. Fordyce 		6 2022
6
🐜
🐒 Maximum Likelihood with Bias-Corrected Calibration is Hard-To-Beat at Label Shift Adaptation
Amr M. Alexandari, A. Kundaje, Avanti Shrikumar 		6 2020
6
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🐬 Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively parallel reporter assays
Rajiv Movva, Peyton Greenside, Avanti Shrikumar, A. Kundaje 		6 2018
6
🐬
🦁 Reverse-complement parameter sharing improves deep learning models for genomics
Avanti Shrikumar, Peyton Greenside, A. Kundaje 		5 2017
5
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