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🐜
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The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: a genotypic analysis
215 auth.
T. Walker,
P. Miotto,
C. Köser,
P. Fowler,
Jeff Knaggs,
Z. Iqbal,
Martin Hunt,
L. Chindelevitch,
M. Farhat,
D. Cirillo,
I. Comas,
J. Posey,
S. Omar,
T. Peto,
Anita Suresh,
...
S. Uplekar,
S. Laurent,
R. Colman,
C. Nathanson,
M. Zignol,
A. Walker,
D. Crook,
N. Ismail,
T. Rodwell,
A. Walker,
A. Steyn,
A. Lalvani,
A. Baulard,
A. Christoffels,
A. Mendoza-Ticona,
A. Trovato,
A. Skrahina,
Alexander S. Lachapelle,
A. Brankin,
A. Piatek,
A. G. Gibertoni Cruz,
A. Koch,
A. Cabibbe,
A. Spitaleri,
A. Brandao,
A. Chaiprasert,
A. Barbova,
A. Van Rie,
A. Ghodousi,
Arnold Bainomugisa,
Ayan Mandal,
A. Roohi,
B. Javid,
B. Zhu,
B. Letcher,
C. Rodrigues,
Camus Nimmo,
C. Nathanson,
C. Duncan,
C. Coulter,
C. Utpatel,
Chunfa Liu,
Clara Grazian,
Clare Kong,
Daniel J. Wilson,
D. Matias,
D. Jorgensen,
D. Zimenkov,
Darren Chetty,
D. A. Moore,
D. Clifton,
D. van Soolingen,
Dong-xin Liu,
Donna J Kohlerschmidt,
D. Barreira,
D. Ngcamu,
Elias David Santos Lazaro,
E. Kelly,
E. Borroni,
E. Roycroft,
E. André,
E. Böttger,
E. Robinson,
Fabrizio Menardo,
F. F. Mendes,
F. Jamieson,
Francesc Coll,
G. F. Gao,
G. Kasule,
G. Rossolini,
G. Rodger,
E. G. Smith,
G. Meintjes,
G. Thwaites,
H. Hoffmann,
H. Albert,
H. Cox,
I. Laurenson,
Irena Arandjelović,
I. Barilar,
J. Robledo,
J. Millard,
J. Johnston,
Jamie Posey,
J. Andrews,
J. Gardy,
J. Guthrie,
Jill Taylor,
J. Werngren,
J. Metcalfe,
J. Coronel,
Joseph Shea,
Joshua J Carter,
Juliana MW Pinhata,
J. Kus,
Katharina Todt,
K. Holt,
K. Nilgiriwala,
K. T. Ghisi,
Kerri M. Malone,
K. Faksri,
K. Musser,
L. Joseph,
L. Rigouts,
Lisa Jarrett,
L. Grandjean,
L. Ferrazoli,
M. Rodrigues,
M. Farhat,
M. Schito,
M. Fitzgibbon,
M. Loembe,
Maria Wijkander,
M. Ballif,
M. Rabodoarivelo,
M. Mihalić,
Mark Wilcox,
M. Zignol,
M. Merker,
M. Egger,
M. O’Donnell,
M. Caws,
Mei-Hua Wu,
Michael G. Whitfield,
M. Inouye,
M. Mansjö,
Minh Ha Dang Thi,
M. Joloba,
S. Kamal,
N. Okozi,
N. Ismail,
N. Mistry,
N. Hoang,
N. Rakotosamimanana,
N. Paton,
P. Rancoita,
P. Lapierre,
P. Hall,
P. Tang,
P. Claxton,
Penelope Wintringer,
P. Keller,
P. V. Thai,
P. Supply,
Prapaporn Srilohasin,
P. Suriyaphol,
Priti Rathod,
Priti Kambli,
R. Groenheit,
R. Ong,
R. Warren,
R. Wilkinson,
R. Diel,
R. Oliveira,
Rukhsar Khot,
R. Jou,
S. Tahseen,
S. Gharbia,
S. Kouchaki,
Sanchi Shah,
S. Plesnik,
S. Earle,
S. Dunstan,
S. Hoosdally,
S. Mitarai,
S. Gagneux,
Shenman Yao,
S. Grandjean Lapierre,
Simone Battaglia,
S. Niemann,
S. Pandey,
T. Halse,
T. Cohen,
Teresa Cortes,
T. Prammananan,
T. Kohl,
N. T. Thuong,
Tik Ying Teo,
T. Peto,
T. William,
Thomas R. Rogers,
Utkarsha Surve,
V. Mathys,
V. Furió,
V. Cook,
Srinivasan Vijay,
V. Escuyer,
V. Dreyer,
V. Sintchenko,
V. Saphonn,
W. Solano,
Wan-Hsuan Lin,
W. van Gemert,
Wen-cong He,
Yang Yang,
Yanlin Zhao,
Youwen Qin,
Yuanyuan Xiao,
Z. Hasan,
Z. M. Puyén
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7 |
2022 |
7
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|
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Validating a 14-Drug Microtiter Plate Containing Bedaquiline and Delamanid for Large-Scale Research Susceptibility Testing of Mycobacterium tuberculosis
12 auth.
P. Rancoita,
F. Cugnata,
A. G. Gibertoni Cruz,
E. Borroni,
S. Hoosdally,
T. Walker,
...
Clara Grazian,
T. J. Davies,
T. Peto,
D. Crook,
P. Fowler,
D. Cirillo
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6 |
2018 |
6
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🐢
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A data compendium associating the genomes of 12,289 Mycobacterium tuberculosis isolates with quantitative resistance phenotypes to 13 antibiotics
23 auth.
D. Crook,
T. Peto,
S. Hoosdally,
A. L. G. Cruz,
S. Walker,
T. Walker,
P. Fowler,
Z. Iqbal,
D. Cirillo,
A. Brankin,
...
Kerri M. Malone,
Martin Hunt,
Jeff Knaggs,
N. Mistry,
Camilla Rodrigues,
David A. J. Moore,
N. Ismail,
S. Niemann,
A. Roohi,
B. Letcher,
P. Rancoita,
E. Borroni,
Clara Grazian
|
6 |
2022 |
6
🐢
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|
🐢
|
Genome-wide association studies of global Mycobacterium tuberculosis resistance to 13 antimicrobials in 10,228 genomes identify new resistance mechanisms
20 auth.
D. Crook,
Camilla Rodrigues,
N. Ismail,
N. Mistry,
Z. Iqbal,
M. Merker,
David A. J. Moore,
A. Walker,
G. Thwaites,
S. Niemann,
...
Daniel J. Wilson,
D. Cirillo,
Alexander S. Lachapelle,
D. Clifton,
T. Peto,
Martin Hunt,
Jeff Knaggs,
P. Fowler,
S. Earle,
Clara Grazian
|
5 |
2022 |
5
🐢
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|
🐜
|
DeepAMR for predicting co-occurrent resistance of Mycobacterium tuberculosis
79 auth.
Yang Yang,
Timothy M. Walker,
A. Walker,
Daniel J. Wilson,
T. Peto,
D. Crook,
Farah E. Shamout,
Irena Arandjelović,
Iñaki Comas,
M. R. Farhat,
Qian Gao,
V. Sintchenko,
D. van Soolingen,
S. Hoosdally,
A. G. Gibertoni Cruz,
...
Joshua Carter,
Clara Grazian,
S. Earle,
S. Kouchaki,
Yang Yang,
Timothy M. Walker,
Philip W. Fowler,
David A. Clifton,
Z. Iqbal,
M. Hunt,
E. G. Smith,
Priti Rathod,
Lisa Jarrett,
D. Matias,
D. Cirillo,
E. Borroni,
Simone Battaglia,
A. Ghodousi,
A. Spitaleri,
A. Cabibbe,
S. Tahseen,
K. Nilgiriwala,
Sanchi Shah,
Camilla Rodrigues,
Priti Kambli,
Utkarsha Surve,
Rukhsar Khot,
Stefan Niemann,
Thomas Kohl,
M. Merker,
Harald Hoffmann,
N. Molodtsov,
S. Plesnik,
N. Ismail,
Guy Thwaites,
Thuong Nguyen Thuy Thuong,
Nhung Hoang Ngoc,
Vijay Srinivasan,
D. Moore,
David Jorge Coronel,
W. Solano,
G. F. Gao,
Guangxue He,
Yanlin Zhao,
Aijing Ma,
Chunfa Liu,
Baoli Zhu,
I. Laurenson,
P. Claxton,
Anastasia Koch,
Robert J. Wilkinson,
A. Lalvani,
J. Posey,
James Jennifer Gardy,
J. Werngren,
N. Paton,
R. Jou,
Mei-Hua Wu,
Wan-Hsuan Lin,
L. Ferrazoli,
R. S. de Oliveira,
São Paulo,
Tingting Zhu,
David A. Clifton
|
5 |
2019 |
5
🐜
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|
🐜
|
GenomegaMap: Within-Species Genome-Wide dN/dS Estimation from over 10,000 Genomes
82 auth.
Daniel J. Wilson,
D. Crook,
T. Peto,
A. Walker,
S. Hoosdally,
A. G. Gibertoni Cruz,
Joshua J Carter,
Clara Grazian,
S. Earle,
S. Kouchaki,
Alexander S. Lachapelle,
Yang Yang,
D. Clifton,
P. Fowler,
Z. Iqbal,
...
Martin Hunt,
Jeff Knaggs,
E. G. Smith,
Priti Rathod,
Lisa Jarrett,
D. Matias,
D. Cirillo,
E. Borroni,
Simone Battaglia,
A. Ghodousi,
A. Spitaleri,
A. Cabibbe,
S. Tahseen,
K. Nilgiriwala,
Sanchi Shah,
Camilla Rodrigues,
Priti Kambli,
Utkarsha Surve,
Rukhsar Khot,
S. Niemann,
T. Kohl,
M. Merker,
H. Hoffmann,
Katharina Todt,
S. Plesnik,
N. Ismail,
S. Omar,
L. Joseph,
G. Thwaites,
Thuong Nguyen Thuy Thuong,
Nhung Hoang Ngoc,
Vijay Srinivasan,
T. Walker,
David A. J. Moore,
J. Coronel,
W. Solano,
G. F. Gao,
Guangxue He,
Yanlin Zhao,
Chunfa Liu,
Aijing Ma,
B. Zhu,
I. Laurenson,
P. Claxton,
A. Koch,
R. Wilkinson,
A. Lalvani,
James T. Posey,
J. Gardy,
J. Werngren,
N. Paton,
R. Jou,
Mei-Hua Wu,
Wan-Hsuan Lin,
L. Ferrazoli,
R. S. de Oliveira,
Irena Arandjelović,
A. Chaiprasert,
I. Comas,
Calle Jaime Roig,
F. Drobniewski,
M. Farhat,
Qian Gao,
R. O. T. Hee,
V. Sintchenko,
P. Supply,
D. van Soolingen
|
5 |
2019 |
5
🐜
|
|
🐜
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Bedaquiline and clofazimine resistance in Mycobacterium tuberculosis: an in-vitro and in-silico data analysis
127 auth.
Lindsay Sonnenkalb,
Joshua Carter,
A. Spitaleri,
Z. Iqbal,
M. Hunt,
Kerri M. Malone,
C. Utpatel,
D. Cirillo,
Camilla Rodrigues,
K. Nilgiriwala,
Philip W. Fowler,
M. Merker,
S. Niemann,
I. Barilar,
Simone Battaglia,
...
E. Borroni,
A. Brandao,
A. Brankin,
A. Cabibbe,
Joshua Carter,
D. Cirillo,
P. Claxton,
D. Clifton,
T. Cohen,
J. Coronel,
D. Crook,
V. Dreyer,
S. Earle,
V. Escuyer,
L. Ferrazoli,
Philip W. Fowler,
George Fu Gao,
J. Gardy,
S. Gharbia,
K. T. Ghisi,
A. Ghodousi,
A. G. Gibertoni Cruz,
L. Grandjean,
Clara Grazian,
R. Groenheit,
J. Guthrie,
Wen-cong He,
H. Hoffmann,
S. Hoosdally,
M. Hunt,
Z. Iqbal,
N. Ismail,
Lisa Jarrett,
L. Joseph,
R. Jou,
Priti Kambli,
Rukhsar Khot,
Jeff Knaggs,
A. Koch,
Donna J Kohlerschmidt,
S. Kouchaki,
Alexander S. Lachapelle,
A. Lalvani,
S. Grandjean Lapierre,
I. Laurenson,
B. Letcher,
Wan-Hsuan Lin,
C. Liu,
Dong-xin Liu,
Kerri M. Malone,
Ayan Mandal,
M. Mansjö,
D. Matias,
G. Meintjes,
Flávia de Freitas Mendes,
M. Merker,
M. Mihalić,
J. Millard,
P. Miotto,
N. Mistry,
David A. J. Moore,
K. Musser,
D. Ngcamu,
N. N. Hoang,
S. Niemann,
K. Nilgiriwala,
Camus Nimmo,
N. Okozi,
R. Oliveira,
S. Omar,
N. Paton,
T. Peto,
Juliana Maira Watanabe Pinhata,
S. Plesnik,
Z. M. Puyén,
M. Rabodoarivelo,
N. Rakotosamimanana,
P. Rancoita,
Priti Rathod,
G. Rodger,
Camilla Rodrigues,
T. Rodwell,
Eaysha Roohi,
D. Santos-Lazaro,
Sanchi Shah,
T. Kohl,
Grace E Smith,
W. Solano,
A. Spitaleri,
P. Supply,
Utkarsha Surve,
S. Tahseen,
N. Thuong,
G. Thwaites,
Katharina Todt,
A. Trovato,
C. Utpatel,
A. Van Rie,
Srinivasan Vijay,
T. Walker,
Sarah Walker,
R. Warren,
J. Werngren,
Maria Wijkander,
R. Wilkinson,
Daniel J. Wilson,
Penelope Wintringer,
Xinke Yu,
Yang Yang,
Yanlin Zhao,
Shenman Yao,
B. Zhu
|
4 |
2023 |
4
🐜
|
|
🐜
|
Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes
126 auth.
M. Hunt,
B. Letcher,
K. Malone,
G. Nguyen,
M. B. Hall,
R. M. Colquhoun,
L. Lima,
M. C. Schatz,
S. Ramakrishnan,
I. Barilar,
Simone Battaglia,
E. Borroni,
Angela Pires Brandão,
A. Brankin,
A. Cabibbe,
...
Joshua Carter,
D. Cirillo,
P. Claxton,
David A. Clifton,
Ted Cohen,
Jorge Coronel,
D. Crook,
V. Dreyer,
S. Earle,
Vin-cent Escuyer,
L. Ferrazoli,
Philip W. Fowler,
G. F. Gao,
Jennifer Gardy,
Saheer Gharbia,
K. T. Ghisi,
Arash Ghodousi,
Ana Lu´ıza,
Gibertoni Cruz,
Louis Grandjean,
Clara Grazian,
R. Groenheit,
Jennifer L. Guthrie,
Wen-cong He,
Harald Hoffmann,
S. Hoosdally,
Z. Iqbal,
Nazir Ismail,
Lisa Jarrett,
L. Joseph,
Ruwen Jou,
Priti Kambli,
Rukhsar Khot,
Jeff Knaggs,
Anastasia Koch,
Donna J Kohlerschmidt,
S. Kouchaki,
Alexander S. Lachapelle,
Ajit Lalvani,
S. Lapierre,
I. F. Laurenson,
Wan-Hsuan Lin,
Chunfa Liu,
Dong-xin Liu,
Ayan Mandal,
Mikael Mansj¨o,
D. Matias,
Graeme Meintjes,
Fl´avia de,
Freitas Mendes,
M. Merker,
M. Mihalić,
J. Millard,
P. Miotto,
Nerges Mistry,
David Moore,
Kim-berlee A Musser,
D. Ngcamu,
Hoang Ngoc,
Nhung,
Stefan Niemann,
K. Nilgiriwala,
Camus Nimmo,
N. Okozi,
Rosangela Siqueira Oliveira,
S. Omar,
N. Paton,
Timothy E. A. Peto,
Juliana Maira,
Watanabe Pinhata,
S. Plesnik,
Z. M. Puyén,
M. Rabodoarivelo,
N. Rakotosamimanana,
P. Rancoita,
Priti Rathod,
Esther Robinson,
G. Rodger,
Camilla Rodrigues,
T. Rodwell,
A. Roohi,
D. Santos-Lazaro,
Sanchi Shah,
Thomas Kohl,
Grace Smith,
W. Solano,
A. Spitaleri,
P. Supply,
Utkarsha Surve,
S. Tahseen,
N. Thuong,
Thuong,
Guy Thwaites,
Katharina Todt,
A. Trovato,
C. Utpatel,
Annelies Van Rie,
Srinivasan Vijay,
Timothy M Walker,
Sarah Walker,
Robin Warren,
J. Werngren,
Maria Wijkander,
Robert J. Wilkinson,
Daniel J Wilson,
Penelope Wintringer,
Yuanyuan Xiao,
Yang Yang,
Yanlin Zhao,
Shen-Yuan Yao,
Baoli Zhu
|
4 |
2021 |
4
🐜
|
